Search of human proteins with 116812591

Search of human proteins with 116812591

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|116812591 RER1 retention in endoplasmic reticulum 1 [Homo
sapiens]
         (196 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|116812591 RER1 retention in endoplasmic reticulum 1 [Homo sap...   409   e-115
gi|21359924 transmembrane protein 48 [Homo sapiens]                    28   3.8  
gi|52353272 olfactory receptor, family 52, subfamily W, member 1...    28   5.0  
gi|32130536 CKLF-like MARVEL transmembrane domain containing 8 [...    27   8.5  
gi|116805340 glycyl-tRNA synthetase [Homo sapiens]                     27   8.5  

>gi|116812591 RER1 retention in endoplasmic reticulum 1 [Homo
           sapiens]
          Length = 196

 Score =  409 bits (1052), Expect = e-115
 Identities = 196/196 (100%), Positives = 196/196 (100%)

Query: 1   MSEGDSVGESVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYL 60
           MSEGDSVGESVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYL
Sbjct: 1   MSEGDSVGESVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYL 60

Query: 61  LQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFK 120
           LQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFK
Sbjct: 61  LQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFK 120

Query: 121 FWHAATKGILVAMVCTFFDAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHG 180
           FWHAATKGILVAMVCTFFDAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHG
Sbjct: 121 FWHAATKGILVAMVCTFFDAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHG 180

Query: 181 KRRYRGKEDAGKAFAS 196
           KRRYRGKEDAGKAFAS
Sbjct: 181 KRRYRGKEDAGKAFAS 196


>gi|21359924 transmembrane protein 48 [Homo sapiens]
          Length = 674

 Score = 28.5 bits (62), Expect = 3.8
 Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 20/111 (18%)

Query: 17  VVYRFFTRLGQIYQSWLDKST----------PYTAVRWVVTLGLSF-VYMIRVYLLQGWY 65
           ++Y F   LG I ++W+  +           P   V  ++ L L + V++  V+LL  WY
Sbjct: 229 ILYYF---LGYIPKAWISTAMNLHIDEQVHRPLDTVSGLLNLSLLYHVWLCGVFLLTTWY 285

Query: 66  IVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRL 116
           +      IY     +      V P   E SD+   LP   N    P I+ L
Sbjct: 286 VSWILFKIYATEAHVF----PVQPPFAEGSDE--CLPKVLNSNPPPIIKYL 330


>gi|52353272 olfactory receptor, family 52, subfamily W, member 1
           [Homo sapiens]
          Length = 320

 Score = 28.1 bits (61), Expect = 5.0
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 111 PFIRRLPEFKFWHAAT---KGILVAMVCTFFDAFNVPVFWPILV 151
           P+   L +  F HA T    G+L+AM C    A   P+ +P+LV
Sbjct: 98  PYAVCLVQMFFVHALTAMESGVLLAMACDRAAAIGRPLHYPVLV 141


>gi|32130536 CKLF-like MARVEL transmembrane domain containing 8
           [Homo sapiens]
          Length = 173

 Score = 27.3 bits (59), Expect = 8.5
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 10/62 (16%)

Query: 110 RPFIRRLPEFKFWHAATKGILVAMVCTFFDAFNVP---------VFWPILVMYFIMLFCI 160
           R F+R LP F        G+LV  +    + F VP         VF+ +L ++F++++ I
Sbjct: 34  REFLRTLPGFLIVAEIVLGLLVWTLIAGTEYFRVPAFGWVMFVAVFYWVLTVFFLIIY-I 92

Query: 161 TM 162
           TM
Sbjct: 93  TM 94


>gi|116805340 glycyl-tRNA synthetase [Homo sapiens]
          Length = 739

 Score = 27.3 bits (59), Expect = 8.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)

Query: 101 LPTKQNEEFRPFIRRLPE 118
           LP  QN+EF PF++ L E
Sbjct: 619 LPLSQNQEFMPFVKELSE 636


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.329    0.143    0.464 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,476,496
Number of Sequences: 37866
Number of extensions: 312436
Number of successful extensions: 780
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 778
Number of HSP's gapped (non-prelim): 5
length of query: 196
length of database: 18,247,518
effective HSP length: 97
effective length of query: 99
effective length of database: 14,574,516
effective search space: 1442877084
effective search space used: 1442877084
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.