Search of human proteins with 239746189

Search of human proteins with 239746189

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239746189 PREDICTED: hypothetical protein XP_002343672 [Homo
sapiens]
         (54 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239757173 PREDICTED: hypothetical protein XP_002345194 [Homo ...   114   2e-26
gi|239751685 PREDICTED: hypothetical protein [Homo sapiens]           114   2e-26
gi|239746189 PREDICTED: hypothetical protein XP_002343672 [Homo ...   114   2e-26
gi|239757169 PREDICTED: hypothetical protein [Homo sapiens]            42   1e-04
gi|239751681 PREDICTED: hypothetical protein XP_002347965 [Homo ...    42   1e-04
gi|239746185 PREDICTED: hypothetical protein XP_002343659 [Homo ...    42   1e-04

>gi|239757173 PREDICTED: hypothetical protein XP_002345194 [Homo
          sapiens]
          Length = 54

 Score =  114 bits (285), Expect = 2e-26
 Identities = 54/54 (100%), Positives = 54/54 (100%)

Query: 1  MINSSFLRGSVWSGRNRKCSSINARTTFISAMANACPMQALLPGPCGERNKSQR 54
          MINSSFLRGSVWSGRNRKCSSINARTTFISAMANACPMQALLPGPCGERNKSQR
Sbjct: 1  MINSSFLRGSVWSGRNRKCSSINARTTFISAMANACPMQALLPGPCGERNKSQR 54


>gi|239751685 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 54

 Score =  114 bits (285), Expect = 2e-26
 Identities = 54/54 (100%), Positives = 54/54 (100%)

Query: 1  MINSSFLRGSVWSGRNRKCSSINARTTFISAMANACPMQALLPGPCGERNKSQR 54
          MINSSFLRGSVWSGRNRKCSSINARTTFISAMANACPMQALLPGPCGERNKSQR
Sbjct: 1  MINSSFLRGSVWSGRNRKCSSINARTTFISAMANACPMQALLPGPCGERNKSQR 54


>gi|239746189 PREDICTED: hypothetical protein XP_002343672 [Homo
          sapiens]
          Length = 54

 Score =  114 bits (285), Expect = 2e-26
 Identities = 54/54 (100%), Positives = 54/54 (100%)

Query: 1  MINSSFLRGSVWSGRNRKCSSINARTTFISAMANACPMQALLPGPCGERNKSQR 54
          MINSSFLRGSVWSGRNRKCSSINARTTFISAMANACPMQALLPGPCGERNKSQR
Sbjct: 1  MINSSFLRGSVWSGRNRKCSSINARTTFISAMANACPMQALLPGPCGERNKSQR 54


>gi|239757169 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 849

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 20/26 (76%), Positives = 23/26 (88%)

Query: 17 RKCSSINARTTFISAMANACPMQALL 42
          RK SS++ARTTFISA+AN CPMQA L
Sbjct: 2  RKRSSVSARTTFISAIANFCPMQAPL 27


>gi|239751681 PREDICTED: hypothetical protein XP_002347965 [Homo
          sapiens]
          Length = 849

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 20/26 (76%), Positives = 23/26 (88%)

Query: 17 RKCSSINARTTFISAMANACPMQALL 42
          RK SS++ARTTFISA+AN CPMQA L
Sbjct: 2  RKRSSVSARTTFISAIANFCPMQAPL 27


>gi|239746185 PREDICTED: hypothetical protein XP_002343659 [Homo
          sapiens]
          Length = 977

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 20/26 (76%), Positives = 23/26 (88%)

Query: 17 RKCSSINARTTFISAMANACPMQALL 42
          RK SS++ARTTFISA+AN CPMQA L
Sbjct: 2  RKRSSVSARTTFISAIANFCPMQAPL 27


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.128    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,073,811
Number of Sequences: 37866
Number of extensions: 55083
Number of successful extensions: 124
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 118
Number of HSP's gapped (non-prelim): 6
length of query: 54
length of database: 18,247,518
effective HSP length: 28
effective length of query: 26
effective length of database: 17,187,270
effective search space: 446869020
effective search space used: 446869020
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.