Search of human proteins with 239745224

Search of human proteins with 239745224

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239745224 PREDICTED: hypothetical protein XP_002343414 [Homo
sapiens]
         (60 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239745224 PREDICTED: hypothetical protein XP_002343414 [Homo ...   120   3e-28
gi|239756301 PREDICTED: similar to hCG1644591 [Homo sapiens]          119   7e-28
gi|239750863 PREDICTED: hypothetical protein XP_002347582 [Homo ...   119   7e-28
gi|71772415 ribosomal protein S15a [Homo sapiens]                      82   1e-16
gi|14165469 ribosomal protein S15a [Homo sapiens]                      82   1e-16
gi|239756897 PREDICTED: similar to hCG1994130 [Homo sapiens]           75   1e-14
gi|239751393 PREDICTED: hypothetical protein XP_002347835 [Homo ...    75   1e-14
gi|239745900 PREDICTED: hypothetical protein XP_002343613 [Homo ...    75   1e-14
gi|157412259 notch1-induced protein isoform a [Homo sapiens]           26   7.9  

>gi|239745224 PREDICTED: hypothetical protein XP_002343414 [Homo
          sapiens]
          Length = 60

 Score =  120 bits (300), Expect = 3e-28
 Identities = 60/60 (100%), Positives = 60/60 (100%)

Query: 1  MVHMNVLVDALKSINNAEKRSKCQVLIRPFSKVIIQFLTVIMKHGYIGDLKPLMITELRK 60
          MVHMNVLVDALKSINNAEKRSKCQVLIRPFSKVIIQFLTVIMKHGYIGDLKPLMITELRK
Sbjct: 1  MVHMNVLVDALKSINNAEKRSKCQVLIRPFSKVIIQFLTVIMKHGYIGDLKPLMITELRK 60


>gi|239756301 PREDICTED: similar to hCG1644591 [Homo sapiens]
          Length = 60

 Score =  119 bits (297), Expect = 7e-28
 Identities = 59/60 (98%), Positives = 60/60 (100%)

Query: 1  MVHMNVLVDALKSINNAEKRSKCQVLIRPFSKVIIQFLTVIMKHGYIGDLKPLMITELRK 60
          MVHMNVLVDALKSINNAEKRSKCQVLIRPFSKVIIQFLTV+MKHGYIGDLKPLMITELRK
Sbjct: 1  MVHMNVLVDALKSINNAEKRSKCQVLIRPFSKVIIQFLTVMMKHGYIGDLKPLMITELRK 60


>gi|239750863 PREDICTED: hypothetical protein XP_002347582 [Homo
          sapiens]
          Length = 60

 Score =  119 bits (297), Expect = 7e-28
 Identities = 59/60 (98%), Positives = 60/60 (100%)

Query: 1  MVHMNVLVDALKSINNAEKRSKCQVLIRPFSKVIIQFLTVIMKHGYIGDLKPLMITELRK 60
          MVHMNVLVDALKSINNAEKRSKCQVLIRPFSKVIIQFLTV+MKHGYIGDLKPLMITELRK
Sbjct: 1  MVHMNVLVDALKSINNAEKRSKCQVLIRPFSKVIIQFLTVMMKHGYIGDLKPLMITELRK 60


>gi|71772415 ribosomal protein S15a [Homo sapiens]
          Length = 130

 Score = 81.6 bits (200), Expect = 1e-16
 Identities = 40/51 (78%), Positives = 45/51 (88%)

Query: 1  MVHMNVLVDALKSINNAEKRSKCQVLIRPFSKVIIQFLTVIMKHGYIGDLK 51
          MV MNVL DALKSINNAEKR K QVLIRP SKVI++FLTV+MKHGYIG+ +
Sbjct: 1  MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFE 51


>gi|14165469 ribosomal protein S15a [Homo sapiens]
          Length = 130

 Score = 81.6 bits (200), Expect = 1e-16
 Identities = 40/51 (78%), Positives = 45/51 (88%)

Query: 1  MVHMNVLVDALKSINNAEKRSKCQVLIRPFSKVIIQFLTVIMKHGYIGDLK 51
          MV MNVL DALKSINNAEKR K QVLIRP SKVI++FLTV+MKHGYIG+ +
Sbjct: 1  MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFE 51


>gi|239756897 PREDICTED: similar to hCG1994130 [Homo sapiens]
          Length = 388

 Score = 74.7 bits (182), Expect = 1e-14
 Identities = 38/56 (67%), Positives = 43/56 (76%), Gaps = 8/56 (14%)

Query: 1   MVHMNVLVDALKSINNAEKRSKCQVLIRPFSKV--------IIQFLTVIMKHGYIG 48
           +VHMNVL DALKSIN AEK+ KCQVLIRP SKV        I+QFLT++MKHGY G
Sbjct: 251 VVHMNVLADALKSINKAEKQGKCQVLIRPSSKVTVPIAPSPIVQFLTIMMKHGYTG 306


>gi|239751393 PREDICTED: hypothetical protein XP_002347835 [Homo
           sapiens]
          Length = 388

 Score = 74.7 bits (182), Expect = 1e-14
 Identities = 38/56 (67%), Positives = 43/56 (76%), Gaps = 8/56 (14%)

Query: 1   MVHMNVLVDALKSINNAEKRSKCQVLIRPFSKV--------IIQFLTVIMKHGYIG 48
           +VHMNVL DALKSIN AEK+ KCQVLIRP SKV        I+QFLT++MKHGY G
Sbjct: 251 VVHMNVLADALKSINKAEKQGKCQVLIRPSSKVTVPIAPSPIVQFLTIMMKHGYTG 306


>gi|239745900 PREDICTED: hypothetical protein XP_002343613 [Homo
           sapiens]
          Length = 388

 Score = 74.7 bits (182), Expect = 1e-14
 Identities = 38/56 (67%), Positives = 43/56 (76%), Gaps = 8/56 (14%)

Query: 1   MVHMNVLVDALKSINNAEKRSKCQVLIRPFSKV--------IIQFLTVIMKHGYIG 48
           +VHMNVL DALKSIN AEK+ KCQVLIRP SKV        I+QFLT++MKHGY G
Sbjct: 251 VVHMNVLADALKSINKAEKQGKCQVLIRPSSKVTVPIAPSPIVQFLTIMMKHGYTG 306


>gi|157412259 notch1-induced protein isoform a [Homo sapiens]
          Length = 451

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 7/45 (15%)

Query: 19  KRSKCQVLI-----RPFSK--VIIQFLTVIMKHGYIGDLKPLMIT 56
           K SK +V+I     RPF +  V+++ +T   +HG  G ++PL+ T
Sbjct: 145 KLSKPEVVIIHDAVRPFVEEGVLLKVVTAAKEHGAAGAIRPLVST 189


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.328    0.141    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,694,303
Number of Sequences: 37866
Number of extensions: 39823
Number of successful extensions: 194
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 183
Number of HSP's gapped (non-prelim): 9
length of query: 60
length of database: 18,247,518
effective HSP length: 33
effective length of query: 27
effective length of database: 16,997,940
effective search space: 458944380
effective search space used: 458944380
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.