Search of human proteins with 239744809

Search of human proteins with 239744809

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239744809 PREDICTED: hypothetical protein XP_002343288 [Homo
sapiens]
         (89 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239755996 PREDICTED: hypothetical protein [Homo sapiens]           186   3e-48
gi|239750513 PREDICTED: hypothetical protein XP_002347418 [Homo ...   186   3e-48
gi|239744809 PREDICTED: hypothetical protein XP_002343288 [Homo ...   186   3e-48
gi|4502827 cholinergic receptor, nicotinic, alpha 4 subunit prec...    29   0.69 
gi|74027270 beta-carotene 15,15'-monooxygenase [Homo sapiens]          29   0.69 
gi|8922692 solute carrier family 38, member 7 [Homo sapiens]           28   1.2  
gi|117168279 ovary-specific acidic protein [Homo sapiens]              27   4.5  

>gi|239755996 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 89

 Score =  186 bits (473), Expect = 3e-48
 Identities = 89/89 (100%), Positives = 89/89 (100%)

Query: 1  MAELNASRSEENNNPAPAEGSQGPGVVKEASVNVLNVKSVQGDVWCLARFLSLPVEMPSL 60
          MAELNASRSEENNNPAPAEGSQGPGVVKEASVNVLNVKSVQGDVWCLARFLSLPVEMPSL
Sbjct: 1  MAELNASRSEENNNPAPAEGSQGPGVVKEASVNVLNVKSVQGDVWCLARFLSLPVEMPSL 60

Query: 61 EFAPGVCEAGWDSELNAPLKICAGFLCHG 89
          EFAPGVCEAGWDSELNAPLKICAGFLCHG
Sbjct: 61 EFAPGVCEAGWDSELNAPLKICAGFLCHG 89


>gi|239750513 PREDICTED: hypothetical protein XP_002347418 [Homo
          sapiens]
          Length = 89

 Score =  186 bits (473), Expect = 3e-48
 Identities = 89/89 (100%), Positives = 89/89 (100%)

Query: 1  MAELNASRSEENNNPAPAEGSQGPGVVKEASVNVLNVKSVQGDVWCLARFLSLPVEMPSL 60
          MAELNASRSEENNNPAPAEGSQGPGVVKEASVNVLNVKSVQGDVWCLARFLSLPVEMPSL
Sbjct: 1  MAELNASRSEENNNPAPAEGSQGPGVVKEASVNVLNVKSVQGDVWCLARFLSLPVEMPSL 60

Query: 61 EFAPGVCEAGWDSELNAPLKICAGFLCHG 89
          EFAPGVCEAGWDSELNAPLKICAGFLCHG
Sbjct: 61 EFAPGVCEAGWDSELNAPLKICAGFLCHG 89


>gi|239744809 PREDICTED: hypothetical protein XP_002343288 [Homo
          sapiens]
          Length = 89

 Score =  186 bits (473), Expect = 3e-48
 Identities = 89/89 (100%), Positives = 89/89 (100%)

Query: 1  MAELNASRSEENNNPAPAEGSQGPGVVKEASVNVLNVKSVQGDVWCLARFLSLPVEMPSL 60
          MAELNASRSEENNNPAPAEGSQGPGVVKEASVNVLNVKSVQGDVWCLARFLSLPVEMPSL
Sbjct: 1  MAELNASRSEENNNPAPAEGSQGPGVVKEASVNVLNVKSVQGDVWCLARFLSLPVEMPSL 60

Query: 61 EFAPGVCEAGWDSELNAPLKICAGFLCHG 89
          EFAPGVCEAGWDSELNAPLKICAGFLCHG
Sbjct: 61 EFAPGVCEAGWDSELNAPLKICAGFLCHG 89


>gi|4502827 cholinergic receptor, nicotinic, alpha 4 subunit
           precursor [Homo sapiens]
          Length = 627

 Score = 29.3 bits (64), Expect = 0.69
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 9/68 (13%)

Query: 4   LNASRSEENNNPAPAE---GSQGPGVVKEASVNVLNVKS----VQGDVWCLARFLSLPVE 56
           L A ++  + +P P     G+Q PG+ K  S++V ++ S    V+G V C +R  S+   
Sbjct: 435 LEAEKASPHPSPGPCRPPHGTQAPGLAKARSLSVQHMSSPGEAVEGGVRCRSR--SIQYC 492

Query: 57  MPSLEFAP 64
           +P  + AP
Sbjct: 493 VPRDDAAP 500


>gi|74027270 beta-carotene 15,15'-monooxygenase [Homo sapiens]
          Length = 547

 Score = 29.3 bits (64), Expect = 0.69
 Identities = 13/41 (31%), Positives = 21/41 (51%)

Query: 23  GPGVVKEASVNVLNVKSVQGDVWCLARFLSLPVEMPSLEFA 63
           G  ++K AS     +K   G V+C   FL   +E+P + +A
Sbjct: 372 GTNLIKVASTTATALKEEDGQVYCQPEFLYEGLELPRVNYA 412


>gi|8922692 solute carrier family 38, member 7 [Homo sapiens]
          Length = 462

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 3/47 (6%)

Query: 45  WCLARFLSLPVEMPSLEFAPG---VCEAGWDSELNAPLKICAGFLCH 88
           W +   + +    P  E  PG      A W +  NA   IC GF CH
Sbjct: 212 WYVTAIVIIKYIWPDKEMTPGNILTRPASWMAVFNAMPTICFGFQCH 258


>gi|117168279 ovary-specific acidic protein [Homo sapiens]
          Length = 240

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 12/23 (52%), Positives = 16/23 (69%)

Query: 10  EENNNPAPAEGSQGPGVVKEASV 32
           EE N+PA +E S G  + +EASV
Sbjct: 209 EEENSPAESESSAGDDLQEEASV 231


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.132    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,859,705
Number of Sequences: 37866
Number of extensions: 147011
Number of successful extensions: 271
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 266
Number of HSP's gapped (non-prelim): 7
length of query: 89
length of database: 18,247,518
effective HSP length: 61
effective length of query: 28
effective length of database: 15,937,692
effective search space: 446255376
effective search space used: 446255376
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.