Search of human proteins with 239744682

Search of human proteins with 239744682

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239744682 PREDICTED: hypothetical protein XP_002343241 [Homo
sapiens]
         (215 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239750380 PREDICTED: similar to hCG1640792 [Homo sapiens]          437   e-123
gi|239744682 PREDICTED: hypothetical protein XP_002343241 [Homo ...   437   e-123
gi|8923942 nucleolar protein family A, member 3 [Homo sapiens]         90   1e-18
gi|48527957 galactokinase 2 isoform 2 [Homo sapiens]                   29   2.6  
gi|4503897 galactokinase 2 isoform 1 [Homo sapiens]                    29   2.6  
gi|4507379 TATA box binding protein [Homo sapiens]                     28   4.5  
gi|36031016 CTCL tumor antigen L14-2 [Homo sapiens]                    28   7.7  

>gi|239750380 PREDICTED: similar to hCG1640792 [Homo sapiens]
          Length = 215

 Score =  437 bits (1124), Expect = e-123
 Identities = 215/215 (100%), Positives = 215/215 (100%)

Query: 1   MGNERKIQLKAYRKITVKHSFRSLDVKAKKLHWYRVQILKDMTTEKDAKDMMVLTRDKFK 60
           MGNERKIQLKAYRKITVKHSFRSLDVKAKKLHWYRVQILKDMTTEKDAKDMMVLTRDKFK
Sbjct: 1   MGNERKIQLKAYRKITVKHSFRSLDVKAKKLHWYRVQILKDMTTEKDAKDMMVLTRDKFK 60

Query: 61  HISEQGDQVYTLEKFDSMGQQTCLAHPAQFSPDDKYSRHRITIKKRLKVWTNNTLCGLKT 120
           HISEQGDQVYTLEKFDSMGQQTCLAHPAQFSPDDKYSRHRITIKKRLKVWTNNTLCGLKT
Sbjct: 61  HISEQGDQVYTLEKFDSMGQQTCLAHPAQFSPDDKYSRHRITIKKRLKVWTNNTLCGLKT 120

Query: 121 NQIKFLSRQKRQDSQGIEHKGHSTVRASLDLTWVRSIRKSESSDAKKGNTNGLMKSLEKI 180
           NQIKFLSRQKRQDSQGIEHKGHSTVRASLDLTWVRSIRKSESSDAKKGNTNGLMKSLEKI
Sbjct: 121 NQIKFLSRQKRQDSQGIEHKGHSTVRASLDLTWVRSIRKSESSDAKKGNTNGLMKSLEKI 180

Query: 181 HNFSGNIKNSVPPPIQGIAEPQGLYVKKIPPVFGI 215
           HNFSGNIKNSVPPPIQGIAEPQGLYVKKIPPVFGI
Sbjct: 181 HNFSGNIKNSVPPPIQGIAEPQGLYVKKIPPVFGI 215


>gi|239744682 PREDICTED: hypothetical protein XP_002343241 [Homo
           sapiens]
          Length = 215

 Score =  437 bits (1124), Expect = e-123
 Identities = 215/215 (100%), Positives = 215/215 (100%)

Query: 1   MGNERKIQLKAYRKITVKHSFRSLDVKAKKLHWYRVQILKDMTTEKDAKDMMVLTRDKFK 60
           MGNERKIQLKAYRKITVKHSFRSLDVKAKKLHWYRVQILKDMTTEKDAKDMMVLTRDKFK
Sbjct: 1   MGNERKIQLKAYRKITVKHSFRSLDVKAKKLHWYRVQILKDMTTEKDAKDMMVLTRDKFK 60

Query: 61  HISEQGDQVYTLEKFDSMGQQTCLAHPAQFSPDDKYSRHRITIKKRLKVWTNNTLCGLKT 120
           HISEQGDQVYTLEKFDSMGQQTCLAHPAQFSPDDKYSRHRITIKKRLKVWTNNTLCGLKT
Sbjct: 61  HISEQGDQVYTLEKFDSMGQQTCLAHPAQFSPDDKYSRHRITIKKRLKVWTNNTLCGLKT 120

Query: 121 NQIKFLSRQKRQDSQGIEHKGHSTVRASLDLTWVRSIRKSESSDAKKGNTNGLMKSLEKI 180
           NQIKFLSRQKRQDSQGIEHKGHSTVRASLDLTWVRSIRKSESSDAKKGNTNGLMKSLEKI
Sbjct: 121 NQIKFLSRQKRQDSQGIEHKGHSTVRASLDLTWVRSIRKSESSDAKKGNTNGLMKSLEKI 180

Query: 181 HNFSGNIKNSVPPPIQGIAEPQGLYVKKIPPVFGI 215
           HNFSGNIKNSVPPPIQGIAEPQGLYVKKIPPVFGI
Sbjct: 181 HNFSGNIKNSVPPPIQGIAEPQGLYVKKIPPVFGI 215


>gi|8923942 nucleolar protein family A, member 3 [Homo sapiens]
          Length = 64

 Score = 90.1 bits (222), Expect = 1e-18
 Identities = 40/49 (81%), Positives = 46/49 (93%)

Query: 61  HISEQGDQVYTLEKFDSMGQQTCLAHPAQFSPDDKYSRHRITIKKRLKV 109
           +++EQGD+VYTL+KFD MGQQTC AHPA+FSPDDKYSRHRITIKKR KV
Sbjct: 6   YLNEQGDRVYTLKKFDPMGQQTCSAHPARFSPDDKYSRHRITIKKRFKV 54


>gi|48527957 galactokinase 2 isoform 2 [Homo sapiens]
          Length = 447

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 17/42 (40%), Positives = 20/42 (47%)

Query: 84  LAHPAQFSPDDKYSRHRITIKKRLKVWTNNTLCGLKTNQIKF 125
           LA+     PD   S + I I K   +W N  LCGLK  Q  F
Sbjct: 70  LANTNPLYPDFSTSANNIQIDKTKPLWHNYFLCGLKGIQEHF 111


>gi|4503897 galactokinase 2 isoform 1 [Homo sapiens]
          Length = 458

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 17/42 (40%), Positives = 20/42 (47%)

Query: 84  LAHPAQFSPDDKYSRHRITIKKRLKVWTNNTLCGLKTNQIKF 125
           LA+     PD   S + I I K   +W N  LCGLK  Q  F
Sbjct: 81  LANTNPLYPDFSTSANNIQIDKTKPLWHNYFLCGLKGIQEHF 122


>gi|4507379 TATA box binding protein [Homo sapiens]
          Length = 339

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 12/22 (54%), Positives = 14/22 (63%)

Query: 189 NSVPPPIQGIAEPQGLYVKKIP 210
           NS+PP  QG+A PQG     IP
Sbjct: 5   NSLPPYAQGLASPQGAMTPGIP 26


>gi|36031016 CTCL tumor antigen L14-2 [Homo sapiens]
          Length = 898

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 30  KLHWYRVQILKDMTTEKDAKDMMVLTRDKFKHISEQGDQV 69
           K+ W + ++  +M + K+ KD +  T  K     E+ DQ+
Sbjct: 391 KVKWAQNKLKAEMDSHKETKDKLKETTTKLTQAKEEADQI 430


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.132    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,053,865
Number of Sequences: 37866
Number of extensions: 320808
Number of successful extensions: 860
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 853
Number of HSP's gapped (non-prelim): 7
length of query: 215
length of database: 18,247,518
effective HSP length: 98
effective length of query: 117
effective length of database: 14,536,650
effective search space: 1700788050
effective search space used: 1700788050
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.