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Search of human proteins with 239744462
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744462 PREDICTED: hypothetical protein XP_002343128 [Homo
sapiens]
(68 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755679 PREDICTED: hypothetical protein [Homo sapiens] 141 1e-34
gi|239750152 PREDICTED: hypothetical protein [Homo sapiens] 141 1e-34
gi|239744462 PREDICTED: hypothetical protein XP_002343128 [Homo ... 141 1e-34
gi|239753870 PREDICTED: hypothetical protein [Homo sapiens] 29 0.92
gi|239748431 PREDICTED: hypothetical protein XP_002346666 [Homo ... 29 0.92
gi|239742365 PREDICTED: hypothetical protein XP_002342523 [Homo ... 29 0.92
gi|4507347 TBP-associated factor 2 [Homo sapiens] 27 4.5
gi|16579885 ribosomal protein L4 [Homo sapiens] 26 5.9
gi|40556370 PHD finger protein 15 [Homo sapiens] 26 7.7
>gi|239755679 PREDICTED: hypothetical protein [Homo sapiens]
Length = 68
Score = 141 bits (355), Expect = 1e-34
Identities = 68/68 (100%), Positives = 68/68 (100%)
Query: 1 MTRAGRRKPPDPKRALHRENNYKGLERPETREITNRAPYISSKHLPKAEITGTAPTAAQL 60
MTRAGRRKPPDPKRALHRENNYKGLERPETREITNRAPYISSKHLPKAEITGTAPTAAQL
Sbjct: 1 MTRAGRRKPPDPKRALHRENNYKGLERPETREITNRAPYISSKHLPKAEITGTAPTAAQL 60
Query: 61 RRVRGAKG 68
RRVRGAKG
Sbjct: 61 RRVRGAKG 68
>gi|239750152 PREDICTED: hypothetical protein [Homo sapiens]
Length = 68
Score = 141 bits (355), Expect = 1e-34
Identities = 68/68 (100%), Positives = 68/68 (100%)
Query: 1 MTRAGRRKPPDPKRALHRENNYKGLERPETREITNRAPYISSKHLPKAEITGTAPTAAQL 60
MTRAGRRKPPDPKRALHRENNYKGLERPETREITNRAPYISSKHLPKAEITGTAPTAAQL
Sbjct: 1 MTRAGRRKPPDPKRALHRENNYKGLERPETREITNRAPYISSKHLPKAEITGTAPTAAQL 60
Query: 61 RRVRGAKG 68
RRVRGAKG
Sbjct: 61 RRVRGAKG 68
>gi|239744462 PREDICTED: hypothetical protein XP_002343128 [Homo
sapiens]
Length = 68
Score = 141 bits (355), Expect = 1e-34
Identities = 68/68 (100%), Positives = 68/68 (100%)
Query: 1 MTRAGRRKPPDPKRALHRENNYKGLERPETREITNRAPYISSKHLPKAEITGTAPTAAQL 60
MTRAGRRKPPDPKRALHRENNYKGLERPETREITNRAPYISSKHLPKAEITGTAPTAAQL
Sbjct: 1 MTRAGRRKPPDPKRALHRENNYKGLERPETREITNRAPYISSKHLPKAEITGTAPTAAQL 60
Query: 61 RRVRGAKG 68
RRVRGAKG
Sbjct: 61 RRVRGAKG 68
>gi|239753870 PREDICTED: hypothetical protein [Homo sapiens]
Length = 140
Score = 28.9 bits (63), Expect = 0.92
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 7 RKPPDPKRALHR---ENNYKGLERPETREITNRAPYISSKHLPKAEITGTAPTAAQLRRV 63
R+ PD R+L + G+ +P T + P + ++ +AE+ T+ T+ L R
Sbjct: 44 RRAPDESRSLKTAAIRGGWGGVAKPPTASVPCFRPEVGARVTGRAEVVATSLTSRPLERK 103
Query: 64 R 64
R
Sbjct: 104 R 104
>gi|239748431 PREDICTED: hypothetical protein XP_002346666 [Homo
sapiens]
Length = 140
Score = 28.9 bits (63), Expect = 0.92
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 7 RKPPDPKRALHR---ENNYKGLERPETREITNRAPYISSKHLPKAEITGTAPTAAQLRRV 63
R+ PD R+L + G+ +P T + P + ++ +AE+ T+ T+ L R
Sbjct: 44 RRAPDESRSLKTAAIRGGWGGVAKPPTASVPCFRPEVGARVTGRAEVVATSLTSRPLERK 103
Query: 64 R 64
R
Sbjct: 104 R 104
>gi|239742365 PREDICTED: hypothetical protein XP_002342523 [Homo
sapiens]
Length = 140
Score = 28.9 bits (63), Expect = 0.92
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 7 RKPPDPKRALHR---ENNYKGLERPETREITNRAPYISSKHLPKAEITGTAPTAAQLRRV 63
R+ PD R+L + G+ +P T + P + ++ +AE+ T+ T+ L R
Sbjct: 44 RRAPDESRSLKTAAIRGGWGGVAKPPTASVPCFRPEVGARVTGRAEVVATSLTSRPLERK 103
Query: 64 R 64
R
Sbjct: 104 R 104
>gi|4507347 TBP-associated factor 2 [Homo sapiens]
Length = 1199
Score = 26.6 bits (57), Expect = 4.5
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 11 DPKRALHRENNYKGLERPETREITNRAPYISSKHLPKAEITGTA-----PTAAQLRRVR 64
+P R ++R+ KG E P ++T++ I++ + + + G PT A L R++
Sbjct: 7 EPAR-MNRKKGDKGFESPRPYKLTHQVVCINNINFQRKSVVGFVELTIFPTVANLNRIK 64
>gi|16579885 ribosomal protein L4 [Homo sapiens]
Length = 427
Score = 26.2 bits (56), Expect = 5.9
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 35 NRAPYISSK---HLPKAEITGTAPTAAQLRRVRG 65
NR PY S+ H AE GT A++ RVRG
Sbjct: 48 NRQPYAVSELAGHQTSAESWGTGRAVARIPRVRG 81
>gi|40556370 PHD finger protein 15 [Homo sapiens]
Length = 790
Score = 25.8 bits (55), Expect = 7.7
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 5 GRRKPPD--PKRALHRE-NNYKGLERPETREITNRAPYISSKHLPKAEITGTAPTAA 58
G R PD PK+ ++ + KG + P TR + P +S HLP + G P A
Sbjct: 616 GSRTTPDKAPKKTWGQDAGSGKGGQGPPTR----KPPRRTSSHLPSSPAAGDCPILA 668
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.130 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,029,316
Number of Sequences: 37866
Number of extensions: 109926
Number of successful extensions: 226
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 223
Number of HSP's gapped (non-prelim): 9
length of query: 68
length of database: 18,247,518
effective HSP length: 41
effective length of query: 27
effective length of database: 16,695,012
effective search space: 450765324
effective search space used: 450765324
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.