Search of human proteins with 239744205

Search of human proteins with 239744205

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239744205 PREDICTED: hypothetical protein XP_002343055 [Homo
sapiens]
         (123 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239755407 PREDICTED: hypothetical protein [Homo sapiens]           263   2e-71
gi|239749905 PREDICTED: hypothetical protein XP_002347200 [Homo ...   263   2e-71
gi|239744205 PREDICTED: hypothetical protein XP_002343055 [Homo ...   263   2e-71
gi|30725877 G protein-coupled receptor 180 precursor [Homo sapiens]    30   0.60 
gi|13324688 bromodomain and WD repeat domain containing 2 [Homo ...    26   8.7  

>gi|239755407 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 123

 Score =  263 bits (673), Expect = 2e-71
 Identities = 123/123 (100%), Positives = 123/123 (100%)

Query: 1   MSSGGSPGCLRLAEGCPNHRAWVRWNRRQPHSAFLIASHLFLSVLVWFNSFQGLELESEN 60
           MSSGGSPGCLRLAEGCPNHRAWVRWNRRQPHSAFLIASHLFLSVLVWFNSFQGLELESEN
Sbjct: 1   MSSGGSPGCLRLAEGCPNHRAWVRWNRRQPHSAFLIASHLFLSVLVWFNSFQGLELESEN 60

Query: 61  PRHLLWNVCLVVLVCPSSSLACRFQVYQRTFCSVESHRTKRKILQLFANILPYLYKQPYT 120
           PRHLLWNVCLVVLVCPSSSLACRFQVYQRTFCSVESHRTKRKILQLFANILPYLYKQPYT
Sbjct: 61  PRHLLWNVCLVVLVCPSSSLACRFQVYQRTFCSVESHRTKRKILQLFANILPYLYKQPYT 120

Query: 121 KKH 123
           KKH
Sbjct: 121 KKH 123


>gi|239749905 PREDICTED: hypothetical protein XP_002347200 [Homo
           sapiens]
          Length = 123

 Score =  263 bits (673), Expect = 2e-71
 Identities = 123/123 (100%), Positives = 123/123 (100%)

Query: 1   MSSGGSPGCLRLAEGCPNHRAWVRWNRRQPHSAFLIASHLFLSVLVWFNSFQGLELESEN 60
           MSSGGSPGCLRLAEGCPNHRAWVRWNRRQPHSAFLIASHLFLSVLVWFNSFQGLELESEN
Sbjct: 1   MSSGGSPGCLRLAEGCPNHRAWVRWNRRQPHSAFLIASHLFLSVLVWFNSFQGLELESEN 60

Query: 61  PRHLLWNVCLVVLVCPSSSLACRFQVYQRTFCSVESHRTKRKILQLFANILPYLYKQPYT 120
           PRHLLWNVCLVVLVCPSSSLACRFQVYQRTFCSVESHRTKRKILQLFANILPYLYKQPYT
Sbjct: 61  PRHLLWNVCLVVLVCPSSSLACRFQVYQRTFCSVESHRTKRKILQLFANILPYLYKQPYT 120

Query: 121 KKH 123
           KKH
Sbjct: 121 KKH 123


>gi|239744205 PREDICTED: hypothetical protein XP_002343055 [Homo
           sapiens]
          Length = 123

 Score =  263 bits (673), Expect = 2e-71
 Identities = 123/123 (100%), Positives = 123/123 (100%)

Query: 1   MSSGGSPGCLRLAEGCPNHRAWVRWNRRQPHSAFLIASHLFLSVLVWFNSFQGLELESEN 60
           MSSGGSPGCLRLAEGCPNHRAWVRWNRRQPHSAFLIASHLFLSVLVWFNSFQGLELESEN
Sbjct: 1   MSSGGSPGCLRLAEGCPNHRAWVRWNRRQPHSAFLIASHLFLSVLVWFNSFQGLELESEN 60

Query: 61  PRHLLWNVCLVVLVCPSSSLACRFQVYQRTFCSVESHRTKRKILQLFANILPYLYKQPYT 120
           PRHLLWNVCLVVLVCPSSSLACRFQVYQRTFCSVESHRTKRKILQLFANILPYLYKQPYT
Sbjct: 61  PRHLLWNVCLVVLVCPSSSLACRFQVYQRTFCSVESHRTKRKILQLFANILPYLYKQPYT 120

Query: 121 KKH 123
           KKH
Sbjct: 121 KKH 123


>gi|30725877 G protein-coupled receptor 180 precursor [Homo sapiens]
          Length = 440

 Score = 29.6 bits (65), Expect = 0.60
 Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 5/87 (5%)

Query: 23  VRWNRRQPHSAFLIASHLFLSVLVWFNSFQGLELESENPRHLLWNVCLVVL-VCPSSSLA 81
           ++W+     +   +   +  SVL+ +  F+ +   S +  H L  + L+VL +C + SL 
Sbjct: 279 LQWDSTPASTGIAVFIVMTQSVLLLWEQFEDISHHSYHSHHNLAGILLIVLRICLALSLG 338

Query: 82  CRFQVYQRTFCSVESHRTKRKILQLFA 108
           C   +YQ    +VE    KR+    FA
Sbjct: 339 C--GLYQ--IITVERSTLKREFYITFA 361


>gi|13324688 bromodomain and WD repeat domain containing 2 [Homo
           sapiens]
          Length = 1224

 Score = 25.8 bits (55), Expect = 8.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 11  RLAEGCPNHRAWVRWNRRQP 30
           R++ G P HR+WVR  R  P
Sbjct: 740 RVSRGIPTHRSWVRKIRFAP 759


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.327    0.137    0.465 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,301,363
Number of Sequences: 37866
Number of extensions: 205990
Number of successful extensions: 492
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 487
Number of HSP's gapped (non-prelim): 6
length of query: 123
length of database: 18,247,518
effective HSP length: 89
effective length of query: 34
effective length of database: 14,877,444
effective search space: 505833096
effective search space used: 505833096
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.