Search of human proteins with 239743846

Search of human proteins with 239743846

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239743846 PREDICTED: similar to BMS1-like, ribosome assembly
protein (yeast) [Homo sapiens]
         (175 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239743846 PREDICTED: similar to BMS1-like, ribosome assembly ...   368   e-102
gi|224589071 BMS1-like, ribosome assembly protein [Homo sapiens]      249   1e-66
gi|239758065 PREDICTED: similar to BMS1-like, ribosome assembly ...   241   2e-64
gi|239743748 PREDICTED: similar to BMS1-like, ribosome assembly ...   234   4e-62
gi|39780588 TSR1, 20S rRNA accumulation [Homo sapiens]                 37   0.007
gi|42518070 tight junction protein 2 (zona occludens 2) isoform ...    29   2.4  
gi|21264353 SWI/SNF related, matrix associated, actin dependent ...    27   9.0  
gi|51477704 SWI/SNF related, matrix associated, actin dependent ...    27   9.0  
gi|51477702 SWI/SNF related, matrix associated, actin dependent ...    27   9.0  

>gi|239743846 PREDICTED: similar to BMS1-like, ribosome assembly
           protein (yeast) [Homo sapiens]
          Length = 175

 Score =  368 bits (945), Expect = e-102
 Identities = 175/175 (100%), Positives = 175/175 (100%)

Query: 1   MVGAGQRQANAEPCYTGARTPPSPLQGQSYGRTKTRARVRARSVLGLAKTRLNHVEFEDQ 60
           MVGAGQRQANAEPCYTGARTPPSPLQGQSYGRTKTRARVRARSVLGLAKTRLNHVEFEDQ
Sbjct: 1   MVGAGQRQANAEPCYTGARTPPSPLQGQSYGRTKTRARVRARSVLGLAKTRLNHVEFEDQ 60

Query: 61  DDEARVQYEGFRPGMYVRVEIENVPCEFVQNFDPLYPIILGGLGNSEGNVGHVQMRLKKH 120
           DDEARVQYEGFRPGMYVRVEIENVPCEFVQNFDPLYPIILGGLGNSEGNVGHVQMRLKKH
Sbjct: 61  DDEARVQYEGFRPGMYVRVEIENVPCEFVQNFDPLYPIILGGLGNSEGNVGHVQMRLKKH 120

Query: 121 LWYKKILKSQDPIIFSVGWRRFQTILLYYIEDHNGRQRLLKYTPQHIHCGAAFWA 175
           LWYKKILKSQDPIIFSVGWRRFQTILLYYIEDHNGRQRLLKYTPQHIHCGAAFWA
Sbjct: 121 LWYKKILKSQDPIIFSVGWRRFQTILLYYIEDHNGRQRLLKYTPQHIHCGAAFWA 175


>gi|224589071 BMS1-like, ribosome assembly protein [Homo sapiens]
          Length = 1282

 Score =  249 bits (635), Expect = 1e-66
 Identities = 114/126 (90%), Positives = 120/126 (95%)

Query: 49  KTRLNHVEFEDQDDEARVQYEGFRPGMYVRVEIENVPCEFVQNFDPLYPIILGGLGNSEG 108
           + +LN  EFEDQDDEARVQYEGFRPGMYVR+EIENVPCEFVQNFDP YPIILGGLGNSEG
Sbjct: 858 QAQLNRAEFEDQDDEARVQYEGFRPGMYVRIEIENVPCEFVQNFDPHYPIILGGLGNSEG 917

Query: 109 NVGHVQMRLKKHLWYKKILKSQDPIIFSVGWRRFQTILLYYIEDHNGRQRLLKYTPQHIH 168
           NVG+VQMRLKKH WYKKILKS+DPIIFSVGWRRFQTI LYYIEDHNGRQRLLKYTPQH+H
Sbjct: 918 NVGYVQMRLKKHRWYKKILKSRDPIIFSVGWRRFQTIPLYYIEDHNGRQRLLKYTPQHMH 977

Query: 169 CGAAFW 174
           CGAAFW
Sbjct: 978 CGAAFW 983


>gi|239758065 PREDICTED: similar to BMS1-like, ribosome assembly
           protein [Homo sapiens]
          Length = 331

 Score =  241 bits (616), Expect = 2e-64
 Identities = 112/123 (91%), Positives = 115/123 (93%)

Query: 52  LNHVEFEDQDDEARVQYEGFRPGMYVRVEIENVPCEFVQNFDPLYPIILGGLGNSEGNVG 111
           LN  EFEDQDDEARV YEGFRPG+YVRVEIENVPCEFVQNFDP YPIILGGLGNSEGNVG
Sbjct: 37  LNRTEFEDQDDEARVPYEGFRPGVYVRVEIENVPCEFVQNFDPHYPIILGGLGNSEGNVG 96

Query: 112 HVQMRLKKHLWYKKILKSQDPIIFSVGWRRFQTILLYYIEDHNGRQRLLKYTPQHIHCGA 171
            VQM LKKH WYKKILKS+DPIIFSVGWRRFQTI LYYIEDHNGRQRLLKYTPQH+HCGA
Sbjct: 97  DVQMHLKKHRWYKKILKSRDPIIFSVGWRRFQTIPLYYIEDHNGRQRLLKYTPQHMHCGA 156

Query: 172 AFW 174
           AFW
Sbjct: 157 AFW 159


>gi|239743748 PREDICTED: similar to BMS1-like, ribosome assembly
           protein (yeast) [Homo sapiens]
          Length = 166

 Score =  234 bits (596), Expect = 4e-62
 Identities = 112/115 (97%), Positives = 112/115 (97%), Gaps = 2/115 (1%)

Query: 52  LNHVEFEDQDDEARVQYEGFRPGMYVRVEIENVPCEFVQNFDPLYPIILGGLGNSEGNVG 111
           LNHVEFEDQDDEARVQYEGFRPGMYVRVEIENVPCEFVQNFDPLYPIILGGLGNSEGNVG
Sbjct: 37  LNHVEFEDQDDEARVQYEGFRPGMYVRVEIENVPCEFVQNFDPLYPIILGGLGNSEGNVG 96

Query: 112 HVQMRLKKHLWYKKILKSQDPIIFSVGWRRFQTILLYYIEDHNGRQRLLKYTPQH 166
           HVQMRLKKHLWYKKILKSQDPIIFSVGWRRFQTILLYYIEDHNGRQRLLK  P H
Sbjct: 97  HVQMRLKKHLWYKKILKSQDPIIFSVGWRRFQTILLYYIEDHNGRQRLLK--PYH 149


>gi|39780588 TSR1, 20S rRNA accumulation [Homo sapiens]
          Length = 804

 Score = 37.4 bits (85), Expect = 0.007
 Identities = 22/82 (26%), Positives = 41/82 (50%)

Query: 67  QYEGFRPGMYVRVEIENVPCEFVQNFDPLYPIILGGLGNSEGNVGHVQMRLKKHLWYKKI 126
           + EG   G YV + +  VP   V+ F    P+I   L   E  +  + M +++     + 
Sbjct: 548 EVEGAEVGWYVTLHVSEVPVSVVECFRQGTPLIAFSLLPHEQKMSVLNMVVRRDPGNTEP 607

Query: 127 LKSQDPIIFSVGWRRFQTILLY 148
           +K+++ +IF  G+RRF+   L+
Sbjct: 608 VKAKEELIFHCGFRRFRASPLF 629


>gi|42518070 tight junction protein 2 (zona occludens 2) isoform 1
            [Homo sapiens]
          Length = 1190

 Score = 28.9 bits (63), Expect = 2.4
 Identities = 25/97 (25%), Positives = 35/97 (36%), Gaps = 12/97 (12%)

Query: 20   TPPSPLQGQSYGRTKTRARVRARSVLGLAKTRLNHVEFEDQDDEARVQYEGFRPGMYVRV 79
            TP  P +G+  G +        +SVLG  K       FE  D +AR+Q       M    
Sbjct: 1054 TPIPPQEGEEVGESSEEQDNAPKSVLGKVKI------FEKMDHKARLQ------RMQELQ 1101

Query: 80   EIENVPCEFVQNFDPLYPIILGGLGNSEGNVGHVQMR 116
            E +N   E  Q    +Y + +       G   H   R
Sbjct: 1102 EAQNARIEIAQKHPDIYAVPIKTHKPDPGTPQHTSSR 1138


>gi|21264353 SWI/SNF related, matrix associated, actin dependent
          regulator of chromatin, subfamily d, member 3 isoform 1
          [Homo sapiens]
          Length = 470

 Score = 26.9 bits (58), Expect = 9.0
 Identities = 16/42 (38%), Positives = 18/42 (42%)

Query: 2  VGAGQRQANAEPCYTGARTPPSPLQGQSYGRTKTRARVRARS 43
          V  G   A  EP    A  PP   Q QS G+    A  R+RS
Sbjct: 43 VRPGLAPAGMEPARKRAAPPPGQSQAQSQGQPVPTAPARSRS 84


>gi|51477704 SWI/SNF related, matrix associated, actin dependent
          regulator of chromatin, subfamily d, member 3 isoform 1
          [Homo sapiens]
          Length = 470

 Score = 26.9 bits (58), Expect = 9.0
 Identities = 16/42 (38%), Positives = 18/42 (42%)

Query: 2  VGAGQRQANAEPCYTGARTPPSPLQGQSYGRTKTRARVRARS 43
          V  G   A  EP    A  PP   Q QS G+    A  R+RS
Sbjct: 43 VRPGLAPAGMEPARKRAAPPPGQSQAQSQGQPVPTAPARSRS 84


>gi|51477702 SWI/SNF related, matrix associated, actin dependent
          regulator of chromatin, subfamily d, member 3 isoform 2
          [Homo sapiens]
          Length = 483

 Score = 26.9 bits (58), Expect = 9.0
 Identities = 16/42 (38%), Positives = 18/42 (42%)

Query: 2  VGAGQRQANAEPCYTGARTPPSPLQGQSYGRTKTRARVRARS 43
          V  G   A  EP    A  PP   Q QS G+    A  R+RS
Sbjct: 56 VRPGLAPAGMEPARKRAAPPPGQSQAQSQGQPVPTAPARSRS 97


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.140    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,954,771
Number of Sequences: 37866
Number of extensions: 278802
Number of successful extensions: 631
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 623
Number of HSP's gapped (non-prelim): 9
length of query: 175
length of database: 18,247,518
effective HSP length: 95
effective length of query: 80
effective length of database: 14,650,248
effective search space: 1172019840
effective search space used: 1172019840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.