Guide to the Human Genome
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Search of human proteins with 239743540

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239743540 PREDICTED: hypothetical protein XP_002342872 [Homo
sapiens]
         (65 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239754866 PREDICTED: hypothetical protein XP_002346136 [Homo ...   134   2e-32
gi|239749405 PREDICTED: hypothetical protein XP_002347012 [Homo ...   134   2e-32
gi|239743540 PREDICTED: hypothetical protein XP_002342872 [Homo ...   134   2e-32
gi|239757747 PREDICTED: similar to Serine/threonine-protein kina...    27   2.7  
gi|239746767 PREDICTED: hypothetical protein [Homo sapiens]            27   2.7  
gi|27477134 nucleoporin 210 [Homo sapiens]                             27   2.7  
gi|239754516 PREDICTED: hypothetical protein [Homo sapiens]            26   7.8  
gi|239749077 PREDICTED: hypothetical protein XP_002346898 [Homo ...    26   7.8  
gi|239743103 PREDICTED: hypothetical protein XP_002342755 [Homo ...    26   7.8  
gi|239508758 PREDICTED: hypothetical protein [Homo sapiens]            26   7.8  

>gi|239754866 PREDICTED: hypothetical protein XP_002346136 [Homo
          sapiens]
          Length = 65

 Score =  134 bits (337), Expect = 2e-32
 Identities = 65/65 (100%), Positives = 65/65 (100%)

Query: 1  MIHWVFTFYKFIRSVRAEDDRRVGVAIFPARSTPGALRLGGASGCELRLSGRILRVAPRH 60
          MIHWVFTFYKFIRSVRAEDDRRVGVAIFPARSTPGALRLGGASGCELRLSGRILRVAPRH
Sbjct: 1  MIHWVFTFYKFIRSVRAEDDRRVGVAIFPARSTPGALRLGGASGCELRLSGRILRVAPRH 60

Query: 61 TMQQK 65
          TMQQK
Sbjct: 61 TMQQK 65


>gi|239749405 PREDICTED: hypothetical protein XP_002347012 [Homo
          sapiens]
          Length = 65

 Score =  134 bits (337), Expect = 2e-32
 Identities = 65/65 (100%), Positives = 65/65 (100%)

Query: 1  MIHWVFTFYKFIRSVRAEDDRRVGVAIFPARSTPGALRLGGASGCELRLSGRILRVAPRH 60
          MIHWVFTFYKFIRSVRAEDDRRVGVAIFPARSTPGALRLGGASGCELRLSGRILRVAPRH
Sbjct: 1  MIHWVFTFYKFIRSVRAEDDRRVGVAIFPARSTPGALRLGGASGCELRLSGRILRVAPRH 60

Query: 61 TMQQK 65
          TMQQK
Sbjct: 61 TMQQK 65


>gi|239743540 PREDICTED: hypothetical protein XP_002342872 [Homo
          sapiens]
          Length = 65

 Score =  134 bits (337), Expect = 2e-32
 Identities = 65/65 (100%), Positives = 65/65 (100%)

Query: 1  MIHWVFTFYKFIRSVRAEDDRRVGVAIFPARSTPGALRLGGASGCELRLSGRILRVAPRH 60
          MIHWVFTFYKFIRSVRAEDDRRVGVAIFPARSTPGALRLGGASGCELRLSGRILRVAPRH
Sbjct: 1  MIHWVFTFYKFIRSVRAEDDRRVGVAIFPARSTPGALRLGGASGCELRLSGRILRVAPRH 60

Query: 61 TMQQK 65
          TMQQK
Sbjct: 61 TMQQK 65


>gi|239757747 PREDICTED: similar to Serine/threonine-protein
          kinase PRKX (Protein kinase PKX1) [Homo sapiens]
          Length = 110

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 15/39 (38%), Positives = 19/39 (48%)

Query: 14 SVRAEDDRRVGVAIFPARSTPGALRLGGASGCELRLSGR 52
          ++R   + R     FP  S P A R GGA  C +R S R
Sbjct: 11 TLRGCTEERTLSLTFPGLSVPAAPREGGARSCLVRESAR 49


>gi|239746767 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 255

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 15/39 (38%), Positives = 19/39 (48%)

Query: 14  SVRAEDDRRVGVAIFPARSTPGALRLGGASGCELRLSGR 52
           ++R   + R     FP  S P A R GGA  C +R S R
Sbjct: 112 TLRGCTEERTLSLTFPGLSVPAAPREGGARSCLVRESAR 150


>gi|27477134 nucleoporin 210 [Homo sapiens]
          Length = 1887

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 4   WVFTFYKFIRSVRAEDDRRVGVAIFPARST 33
           W+    KF ++V AED   +G+A+F   S+
Sbjct: 671 WILEPSKFFQNVTAEDTDSIGLALFAPHSS 700


>gi|239754516 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 334

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 16  RAEDDRRVGVAIFPARSTPGALRLGGASGCELRLSGRILRVAPRH 60
           RA + RR G    PA  TP  L+  GA+   +RL   ++ V  RH
Sbjct: 273 RARETRRRGEEGVPAAGTPRCLQQEGATQVAVRLP--LVSVLVRH 315


>gi|239749077 PREDICTED: hypothetical protein XP_002346898 [Homo
           sapiens]
          Length = 334

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 16  RAEDDRRVGVAIFPARSTPGALRLGGASGCELRLSGRILRVAPRH 60
           RA + RR G    PA  TP  L+  GA+   +RL   ++ V  RH
Sbjct: 273 RARETRRRGEEGVPAAGTPRCLQQEGATQVAVRLP--LVSVLVRH 315


>gi|239743103 PREDICTED: hypothetical protein XP_002342755 [Homo
           sapiens]
          Length = 329

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 16  RAEDDRRVGVAIFPARSTPGALRLGGASGCELRLSGRILRVAPRH 60
           RA + RR G    PA  TP  L+  GA+   +RL   ++ V  RH
Sbjct: 268 RARETRRRGEEGVPAAGTPRCLQQEGATQVAVRLP--LVSVLVRH 310


>gi|239508758 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 329

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 16  RAEDDRRVGVAIFPARSTPGALRLGGASGCELRLSGRILRVAPRH 60
           RA + RR G    PA  TP  L+  GA+   +RL   ++ V  RH
Sbjct: 268 RARETRRRGEEGVPAAGTPRCLQQEGATQVAVRLP--LVSVLVRH 310


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.330    0.142    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,367,812
Number of Sequences: 37866
Number of extensions: 69847
Number of successful extensions: 236
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 230
Number of HSP's gapped (non-prelim): 10
length of query: 65
length of database: 18,247,518
effective HSP length: 38
effective length of query: 27
effective length of database: 16,808,610
effective search space: 453832470
effective search space used: 453832470
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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