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Search of human proteins with 239742680
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239742680 PREDICTED: hypothetical protein XP_002342594 [Homo
sapiens]
(43 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754094 PREDICTED: similar to PL-5283 protein [Homo sapiens] 90 4e-19
gi|239748655 PREDICTED: hypothetical protein XP_002346769 [Homo ... 90 4e-19
gi|239742680 PREDICTED: hypothetical protein XP_002342594 [Homo ... 90 4e-19
gi|239753395 PREDICTED: similar to PL-5283 protein [Homo sapiens] 63 6e-11
gi|239747966 PREDICTED: hypothetical protein XP_002346486 [Homo ... 63 6e-11
gi|239741861 PREDICTED: hypothetical protein XP_002342342 [Homo ... 63 6e-11
gi|195963435 PL-5283 protein [Homo sapiens] 63 6e-11
gi|239754565 PREDICTED: similar to PL-5283 protein [Homo sapiens] 59 1e-09
gi|239749163 PREDICTED: hypothetical protein XP_002346927 [Homo ... 59 1e-09
gi|239743160 PREDICTED: hypothetical protein XP_002342763 [Homo ... 59 1e-09
gi|239508820 PREDICTED: similar to PL-5283 protein [Homo sapiens] 59 1e-09
gi|239754795 PREDICTED: similar to PL-5283 protein [Homo sapiens] 31 0.24
>gi|239754094 PREDICTED: similar to PL-5283 protein [Homo sapiens]
Length = 43
Score = 89.7 bits (221), Expect = 4e-19
Identities = 43/43 (100%), Positives = 43/43 (100%)
Query: 1 MLQLLLGFTLANMVGMYLAQNYDAPNLAKKKDLMPGRKKPPSS 43
MLQLLLGFTLANMVGMYLAQNYDAPNLAKKKDLMPGRKKPPSS
Sbjct: 1 MLQLLLGFTLANMVGMYLAQNYDAPNLAKKKDLMPGRKKPPSS 43
>gi|239748655 PREDICTED: hypothetical protein XP_002346769 [Homo
sapiens]
Length = 43
Score = 89.7 bits (221), Expect = 4e-19
Identities = 43/43 (100%), Positives = 43/43 (100%)
Query: 1 MLQLLLGFTLANMVGMYLAQNYDAPNLAKKKDLMPGRKKPPSS 43
MLQLLLGFTLANMVGMYLAQNYDAPNLAKKKDLMPGRKKPPSS
Sbjct: 1 MLQLLLGFTLANMVGMYLAQNYDAPNLAKKKDLMPGRKKPPSS 43
>gi|239742680 PREDICTED: hypothetical protein XP_002342594 [Homo
sapiens]
Length = 43
Score = 89.7 bits (221), Expect = 4e-19
Identities = 43/43 (100%), Positives = 43/43 (100%)
Query: 1 MLQLLLGFTLANMVGMYLAQNYDAPNLAKKKDLMPGRKKPPSS 43
MLQLLLGFTLANMVGMYLAQNYDAPNLAKKKDLMPGRKKPPSS
Sbjct: 1 MLQLLLGFTLANMVGMYLAQNYDAPNLAKKKDLMPGRKKPPSS 43
>gi|239753395 PREDICTED: similar to PL-5283 protein [Homo sapiens]
Length = 47
Score = 62.8 bits (151), Expect = 6e-11
Identities = 32/47 (68%), Positives = 36/47 (76%), Gaps = 4/47 (8%)
Query: 1 MLQLLLGFTLANMVGMYLAQNYDAPNLAKK----KDLMPGRKKPPSS 43
MLQ LLGFTL N+VGMYLAQNYD PNLAKK K + +KKPP+S
Sbjct: 1 MLQFLLGFTLGNVVGMYLAQNYDIPNLAKKLEEIKKDLDAKKKPPTS 47
>gi|239747966 PREDICTED: hypothetical protein XP_002346486 [Homo
sapiens]
Length = 47
Score = 62.8 bits (151), Expect = 6e-11
Identities = 32/47 (68%), Positives = 36/47 (76%), Gaps = 4/47 (8%)
Query: 1 MLQLLLGFTLANMVGMYLAQNYDAPNLAKK----KDLMPGRKKPPSS 43
MLQ LLGFTL N+VGMYLAQNYD PNLAKK K + +KKPP+S
Sbjct: 1 MLQFLLGFTLGNVVGMYLAQNYDIPNLAKKLEEIKKDLDAKKKPPTS 47
>gi|239741861 PREDICTED: hypothetical protein XP_002342342 [Homo
sapiens]
Length = 47
Score = 62.8 bits (151), Expect = 6e-11
Identities = 32/47 (68%), Positives = 36/47 (76%), Gaps = 4/47 (8%)
Query: 1 MLQLLLGFTLANMVGMYLAQNYDAPNLAKK----KDLMPGRKKPPSS 43
MLQ LLGFTL N+VGMYLAQNYD PNLAKK K + +KKPP+S
Sbjct: 1 MLQFLLGFTLGNVVGMYLAQNYDIPNLAKKLEEIKKDLDAKKKPPTS 47
>gi|195963435 PL-5283 protein [Homo sapiens]
Length = 47
Score = 62.8 bits (151), Expect = 6e-11
Identities = 32/47 (68%), Positives = 36/47 (76%), Gaps = 4/47 (8%)
Query: 1 MLQLLLGFTLANMVGMYLAQNYDAPNLAKK----KDLMPGRKKPPSS 43
MLQ LLGFTL N+VGMYLAQNYD PNLAKK K + +KKPPS+
Sbjct: 1 MLQFLLGFTLGNVVGMYLAQNYDIPNLAKKLEEIKKDLDAKKKPPSA 47
>gi|239754565 PREDICTED: similar to PL-5283 protein [Homo sapiens]
Length = 47
Score = 58.5 bits (140), Expect = 1e-09
Identities = 31/47 (65%), Positives = 35/47 (74%), Gaps = 4/47 (8%)
Query: 1 MLQLLLGFTLANMVGMYLAQNYDAPNLAKK----KDLMPGRKKPPSS 43
MLQ LLGFTL N+VG+YLAQNYD PNLAKK K + +KK PSS
Sbjct: 1 MLQFLLGFTLGNVVGIYLAQNYDIPNLAKKLEEIKKDLDAKKKLPSS 47
>gi|239749163 PREDICTED: hypothetical protein XP_002346927 [Homo
sapiens]
Length = 47
Score = 58.5 bits (140), Expect = 1e-09
Identities = 31/47 (65%), Positives = 35/47 (74%), Gaps = 4/47 (8%)
Query: 1 MLQLLLGFTLANMVGMYLAQNYDAPNLAKK----KDLMPGRKKPPSS 43
MLQ LLGFTL N+VG+YLAQNYD PNLAKK K + +KK PSS
Sbjct: 1 MLQFLLGFTLGNVVGIYLAQNYDIPNLAKKLEEIKKDLDAKKKLPSS 47
>gi|239743160 PREDICTED: hypothetical protein XP_002342763 [Homo
sapiens]
Length = 47
Score = 58.5 bits (140), Expect = 1e-09
Identities = 31/47 (65%), Positives = 35/47 (74%), Gaps = 4/47 (8%)
Query: 1 MLQLLLGFTLANMVGMYLAQNYDAPNLAKK----KDLMPGRKKPPSS 43
MLQ LLGFTL N+VG+YLAQNYD PNLAKK K + +KK PSS
Sbjct: 1 MLQFLLGFTLGNVVGIYLAQNYDIPNLAKKLEEIKKDLDAKKKLPSS 47
>gi|239508820 PREDICTED: similar to PL-5283 protein [Homo sapiens]
Length = 47
Score = 58.5 bits (140), Expect = 1e-09
Identities = 31/47 (65%), Positives = 35/47 (74%), Gaps = 4/47 (8%)
Query: 1 MLQLLLGFTLANMVGMYLAQNYDAPNLAKK----KDLMPGRKKPPSS 43
MLQ LLGFTL N+VG+YLAQNYD PNLAKK K + +KK PSS
Sbjct: 1 MLQFLLGFTLGNVVGIYLAQNYDIPNLAKKLEEIKKDLDAKKKLPSS 47
>gi|239754795 PREDICTED: similar to PL-5283 protein [Homo sapiens]
Length = 63
Score = 30.8 bits (68), Expect = 0.24
Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 6/48 (12%)
Query: 1 MLQLLLGFTLANMVGMYLAQNYDAPNLAK-----KKDLMPGRKKPPSS 43
MLQ LL F N V ++L QN NL+K KKDL +K+ PSS
Sbjct: 1 MLQSLLEFAPGNGVEIHLVQNDSISNLSKQFADIKKDLY-AKKEAPSS 47
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,783,533
Number of Sequences: 37866
Number of extensions: 43154
Number of successful extensions: 98
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86
Number of HSP's gapped (non-prelim): 12
length of query: 43
length of database: 18,247,518
effective HSP length: 17
effective length of query: 26
effective length of database: 17,603,796
effective search space: 457698696
effective search space used: 457698696
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.