Search of human proteins with 116325985

Search of human proteins with 116325985

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|116325985 transcript expressed during hematopoiesis 2 [Homo
sapiens]
         (113 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|116325985 transcript expressed during hematopoiesis 2 [Homo s...   236   4e-63
gi|13376331 L-2-hydroxyglutarate dehydrogenase precursor [Homo s...    30   0.54 
gi|30425526 N-acetyltransferase 8-like (GCN5-related, putative) ...    30   0.54 
gi|169209448 PREDICTED: hypothetical protein [Homo sapiens]            29   0.92 
gi|169210523 PREDICTED: hypothetical protein [Homo sapiens]            29   0.92 
gi|169210084 PREDICTED: hypothetical protein [Homo sapiens]            29   0.92 
gi|117168283 N-acetyltransferase 8B [Homo sapiens]                     28   2.0  
gi|14591902 RecQ protein-like [Homo sapiens]                           26   6.0  
gi|14591904 RecQ protein-like [Homo sapiens]                           26   6.0  
gi|157805480 pregnancy specific beta-1-glycoprotein 7 precursor ...    26   6.0  

>gi|116325985 transcript expressed during hematopoiesis 2 [Homo
           sapiens]
          Length = 113

 Score =  236 bits (601), Expect = 4e-63
 Identities = 113/113 (100%), Positives = 113/113 (100%)

Query: 1   MAHSAAAVPLGALEQGCPIRVEHDRRRRQFTVRLNGCHDRAVLLYEYVGKRIVDLQHTEV 60
           MAHSAAAVPLGALEQGCPIRVEHDRRRRQFTVRLNGCHDRAVLLYEYVGKRIVDLQHTEV
Sbjct: 1   MAHSAAAVPLGALEQGCPIRVEHDRRRRQFTVRLNGCHDRAVLLYEYVGKRIVDLQHTEV 60

Query: 61  PDAYRGRGIAKHLAKAALDFVVEEDLKAHLTCWYIQKYVKENPLPQYLERLQP 113
           PDAYRGRGIAKHLAKAALDFVVEEDLKAHLTCWYIQKYVKENPLPQYLERLQP
Sbjct: 61  PDAYRGRGIAKHLAKAALDFVVEEDLKAHLTCWYIQKYVKENPLPQYLERLQP 113


>gi|13376331 L-2-hydroxyglutarate dehydrogenase precursor [Homo
           sapiens]
          Length = 463

 Score = 29.6 bits (65), Expect = 0.54
 Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 7/78 (8%)

Query: 30  FTVRLNGC---HDRAVLLYEYVGKRIVDLQHTEVPDAYRGRGIAKHLAKAALDFVVEEDL 86
           FT R++G       AVL ++  G R  D   T+V D     G+ K LA     + V E  
Sbjct: 315 FTPRMDGSIWLGPNAVLAFKREGYRPFDFSATDVMDIIINSGLIK-LASQNFSYGVTEMY 373

Query: 87  KA---HLTCWYIQKYVKE 101
           KA     T  Y+QK++ E
Sbjct: 374 KACFLGATVKYLQKFIPE 391


>gi|30425526 N-acetyltransferase 8-like (GCN5-related, putative)
          [Homo sapiens]
          Length = 134

 Score = 29.6 bits (65), Expect = 0.54
 Identities = 14/36 (38%), Positives = 20/36 (55%)

Query: 53 VDLQHTEVPDAYRGRGIAKHLAKAALDFVVEEDLKA 88
          V+L    V   +RG+GIAK L +  L+F V  +  A
Sbjct: 40 VELLRMSVDSRFRGKGIAKALGRKVLEFAVVHNYSA 75


>gi|169209448 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 260

 Score = 28.9 bits (63), Expect = 0.92
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 9   PLGALEQGCPIRVEHDRRRRQFTVRLNGCHDRAVLLYEYVGKRIVDLQHTEVPDAYRGRG 68
           P GA + GC  R  H RRRR  +V        ++L   +V + +V L H     A+   G
Sbjct: 40  PAGATDIGCRRRRSHRRRRRPGSV-AEDLLPPSILQVLHVVEMLVRL-HMNTEVAFGSCG 97

Query: 69  IAKHLAKAAL 78
           +  HLA   L
Sbjct: 98  VVTHLAAERL 107


>gi|169210523 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 260

 Score = 28.9 bits (63), Expect = 0.92
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 9   PLGALEQGCPIRVEHDRRRRQFTVRLNGCHDRAVLLYEYVGKRIVDLQHTEVPDAYRGRG 68
           P GA + GC  R  H RRRR  +V        ++L   +V + +V L H     A+   G
Sbjct: 40  PAGATDIGCRRRRSHRRRRRPGSV-AEDLLPPSILQVLHVVEMLVRL-HMNTEVAFGSCG 97

Query: 69  IAKHLAKAAL 78
           +  HLA   L
Sbjct: 98  VVTHLAAERL 107


>gi|169210084 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 260

 Score = 28.9 bits (63), Expect = 0.92
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 9   PLGALEQGCPIRVEHDRRRRQFTVRLNGCHDRAVLLYEYVGKRIVDLQHTEVPDAYRGRG 68
           P GA + GC  R  H RRRR  +V        ++L   +V + +V L H     A+   G
Sbjct: 40  PAGATDIGCRRRRSHRRRRRPGSV-AEDLLPPSILQVLHVVEMLVRL-HMNTEVAFGSCG 97

Query: 69  IAKHLAKAAL 78
           +  HLA   L
Sbjct: 98  VVTHLAAERL 107


>gi|117168283 N-acetyltransferase 8B [Homo sapiens]
          Length = 227

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 53  VDLQHTEVPDAYRGRGIAKHLAKAALDFVVEE 84
           + L H  V + +RG+GIAK L +  L F  ++
Sbjct: 137 LQLFHLSVDNEHRGQGIAKALVRTVLQFARDQ 168


>gi|14591902 RecQ protein-like [Homo sapiens]
          Length = 649

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 62  DAYRGRGIAK-HLAKAALDFVVEEDLKAHLTCWYIQKYVKEN 102
           D++ G+G AK  +A      +  EDL+  +  + IQ+Y+KE+
Sbjct: 517 DSWMGKGAAKLRVAGVVAPTLPREDLEKIIAHFLIQQYLKED 558


>gi|14591904 RecQ protein-like [Homo sapiens]
          Length = 649

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 62  DAYRGRGIAK-HLAKAALDFVVEEDLKAHLTCWYIQKYVKEN 102
           D++ G+G AK  +A      +  EDL+  +  + IQ+Y+KE+
Sbjct: 517 DSWMGKGAAKLRVAGVVAPTLPREDLEKIIAHFLIQQYLKED 558


>gi|157805480 pregnancy specific beta-1-glycoprotein 7 precursor
           [Homo sapiens]
          Length = 419

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 16/42 (38%), Positives = 19/42 (45%)

Query: 44  LYEYVGKRIVDLQHTEVPDAYRGRGIAKHLAKAALDFVVEED 85
           LY YV   IVD Q  +   AY GR      A   +  V +ED
Sbjct: 75  LYHYVTSYIVDGQIIKYGPAYSGRETVYSNASLLIQNVTQED 116


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.324    0.139    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,394,386
Number of Sequences: 37866
Number of extensions: 168128
Number of successful extensions: 400
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 396
Number of HSP's gapped (non-prelim): 10
length of query: 113
length of database: 18,247,518
effective HSP length: 83
effective length of query: 30
effective length of database: 15,104,640
effective search space: 453139200
effective search space used: 453139200
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.