Search of human proteins with 116325983

Search of human proteins with 116325983

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|116325983 transmembrane protein 37 [Homo sapiens]
         (190 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|116325983 transmembrane protein 37 [Homo sapiens]                  384   e-107
gi|111607482 transmembrane protein 140 [Homo sapiens]                  35   0.030
gi|29294615 sweet taste receptor T1r isoform b [Homo sapiens]          30   0.96 
gi|29294619 sweet taste receptor T1r isoform c [Homo sapiens]          30   0.96 
gi|4502539 voltage-dependent calcium channel gamma-1 subunit [Ho...    28   3.6  
gi|239754487 PREDICTED: hypothetical protein [Homo sapiens]            28   6.2  
gi|239749042 PREDICTED: hypothetical protein [Homo sapiens]            28   6.2  
gi|239743067 PREDICTED: hypothetical protein [Homo sapiens]            28   6.2  
gi|239508713 PREDICTED: hypothetical protein [Homo sapiens]            28   6.2  
gi|4503561 epithelial membrane protein 2 [Homo sapiens]                28   6.2  
gi|156151389 myc target 1 [Homo sapiens]                               27   8.1  

>gi|116325983 transmembrane protein 37 [Homo sapiens]
          Length = 190

 Score =  384 bits (986), Expect = e-107
 Identities = 190/190 (100%), Positives = 190/190 (100%)

Query: 1   MTAVGVQAQRPLGQRQPRRSFFESFIRTLIITCVALAVVLSSVSICDGHWLLAEDRLFGL 60
           MTAVGVQAQRPLGQRQPRRSFFESFIRTLIITCVALAVVLSSVSICDGHWLLAEDRLFGL
Sbjct: 1   MTAVGVQAQRPLGQRQPRRSFFESFIRTLIITCVALAVVLSSVSICDGHWLLAEDRLFGL 60

Query: 61  WHFCTTTNQTICFRDLGQAHVPGLAVGMGLVRSVGALAVVAAIFGLEFLMVSQLCEDKHS 120
           WHFCTTTNQTICFRDLGQAHVPGLAVGMGLVRSVGALAVVAAIFGLEFLMVSQLCEDKHS
Sbjct: 61  WHFCTTTNQTICFRDLGQAHVPGLAVGMGLVRSVGALAVVAAIFGLEFLMVSQLCEDKHS 120

Query: 121 QCKWVMGSILLLVSFVLSSGGLLGFVILLRNQVTLIGFTLMFWCEFTASFLLFLNAISGL 180
           QCKWVMGSILLLVSFVLSSGGLLGFVILLRNQVTLIGFTLMFWCEFTASFLLFLNAISGL
Sbjct: 121 QCKWVMGSILLLVSFVLSSGGLLGFVILLRNQVTLIGFTLMFWCEFTASFLLFLNAISGL 180

Query: 181 HINSITHPWE 190
           HINSITHPWE
Sbjct: 181 HINSITHPWE 190


>gi|111607482 transmembrane protein 140 [Homo sapiens]
          Length = 185

 Score = 35.4 bits (80), Expect = 0.030
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 5/85 (5%)

Query: 58  FGLWHFCTTTNQTICFRDLGQAHVPGLAVGMGLVRSVGALAVVAAIFGLEFLMVSQLCED 117
           F LW+  T+T Q   F +L    VP   VG+GL R     ++V  +F  + L+++Q   D
Sbjct: 52  FCLWNEDTSTLQCHQFPELEALGVP--RVGLGLARLGVYGSLVLTLFAPQPLLLAQCNSD 109

Query: 118 KHSQCKWVMGSILLLVSFVLSSGGL 142
           + +   W +    L VS VL +GGL
Sbjct: 110 ERA---WRLAVGFLAVSSVLLAGGL 131


>gi|29294615 sweet taste receptor T1r isoform b [Homo sapiens]
          Length = 841

 Score = 30.4 bits (67), Expect = 0.96
 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 7/67 (10%)

Query: 130 LLLVSFVLSSGGLLGF-------VILLRNQVTLIGFTLMFWCEFTASFLLFLNAISGLHI 182
           L+L S    SG L GF         LLR  +  +GFT+   C    SF L +       +
Sbjct: 607 LMLGSLAAGSGSLYGFFGEPTRPACLLRQALFALGFTIFLSCLTVRSFQLIIIFKFSTKV 666

Query: 183 NSITHPW 189
            +  H W
Sbjct: 667 PTFYHAW 673


>gi|29294619 sweet taste receptor T1r isoform c [Homo sapiens]
          Length = 587

 Score = 30.4 bits (67), Expect = 0.96
 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 7/67 (10%)

Query: 130 LLLVSFVLSSGGLLGF-------VILLRNQVTLIGFTLMFWCEFTASFLLFLNAISGLHI 182
           L+L S    SG L GF         LLR  +  +GFT+   C    SF L +       +
Sbjct: 353 LMLGSLAAGSGSLYGFFGEPTRPACLLRQALFALGFTIFLSCLTVRSFQLIIIFKFSTKV 412

Query: 183 NSITHPW 189
            +  H W
Sbjct: 413 PTFYHAW 419


>gi|4502539 voltage-dependent calcium channel gamma-1 subunit [Homo
           sapiens]
          Length = 222

 Score = 28.5 bits (62), Expect = 3.6
 Identities = 22/110 (20%), Positives = 35/110 (31%), Gaps = 27/110 (24%)

Query: 33  CVALAVVLSSVSICDGHWLLAEDRL-----------FGLWHFCTTTNQTICFRDLGQAHV 81
           C+   +VL+  ++   HW +    +           FGLW  CT        +  G   +
Sbjct: 15  CILAGIVLAMTAVVTDHWAVLSPHMEHHNTTCEAAHFGLWRICTKRIPMDDSKTCGPITL 74

Query: 82  PG----------------LAVGMGLVRSVGALAVVAAIFGLEFLMVSQLC 115
           PG                        +     A   AIF L F+++  LC
Sbjct: 75  PGEKNCSYFRHFNPGESSEIFEFTTQKEYSISAAAIAIFSLGFIILGSLC 124


>gi|239754487 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 424

 Score = 27.7 bits (60), Expect = 6.2
 Identities = 17/55 (30%), Positives = 24/55 (43%)

Query: 49  HWLLAEDRLFGLWHFCTTTNQTICFRDLGQAHVPGLAVGMGLVRSVGALAVVAAI 103
           H+L    RL   WH+  T   +   R LG+ H+P      G  R V +L  V  +
Sbjct: 325 HFLHVARRLAPGWHWSDTAQLSPTLRSLGERHLPVCRALGGTDRVVLSLVCVTLL 379


>gi|239749042 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 424

 Score = 27.7 bits (60), Expect = 6.2
 Identities = 17/55 (30%), Positives = 24/55 (43%)

Query: 49  HWLLAEDRLFGLWHFCTTTNQTICFRDLGQAHVPGLAVGMGLVRSVGALAVVAAI 103
           H+L    RL   WH+  T   +   R LG+ H+P      G  R V +L  V  +
Sbjct: 325 HFLHVARRLAPGWHWSDTAQLSPTLRSLGERHLPVCRALGGTDRVVLSLVCVTLL 379


>gi|239743067 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 424

 Score = 27.7 bits (60), Expect = 6.2
 Identities = 17/55 (30%), Positives = 24/55 (43%)

Query: 49  HWLLAEDRLFGLWHFCTTTNQTICFRDLGQAHVPGLAVGMGLVRSVGALAVVAAI 103
           H+L    RL   WH+  T   +   R LG+ H+P      G  R V +L  V  +
Sbjct: 325 HFLHVARRLAPGWHWSDTAQLSPTLRSLGERHLPVCRALGGTDRVVLSLVCVTLL 379


>gi|239508713 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 424

 Score = 27.7 bits (60), Expect = 6.2
 Identities = 17/55 (30%), Positives = 24/55 (43%)

Query: 49  HWLLAEDRLFGLWHFCTTTNQTICFRDLGQAHVPGLAVGMGLVRSVGALAVVAAI 103
           H+L    RL   WH+  T   +   R LG+ H+P      G  R V +L  V  +
Sbjct: 325 HFLHVARRLAPGWHWSDTAQLSPTLRSLGERHLPVCRALGGTDRVVLSLVCVTLL 379


>gi|4503561 epithelial membrane protein 2 [Homo sapiens]
          Length = 167

 Score = 27.7 bits (60), Expect = 6.2
 Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 4/90 (4%)

Query: 24  SFIRTLIITCVALAVVLSSVSICDGHWLLAEDRLFGLWHFCTTTNQTICFRDLGQAHVPG 83
           +FI    IT  AL  + +     D  W + ++    +W  CT         D  Q +   
Sbjct: 6   AFIIAFHITSAALLFIAT----VDNAWWVGDEFFADVWRICTNNTNCTVINDSFQEYSTL 61

Query: 84  LAVGMGLVRSVGALAVVAAIFGLEFLMVSQ 113
            AV   ++ S     +   IF L+   + Q
Sbjct: 62  QAVQATMILSTILCCIAFFIFVLQLFRLKQ 91


>gi|156151389 myc target 1 [Homo sapiens]
          Length = 235

 Score = 27.3 bits (59), Expect = 8.1
 Identities = 13/43 (30%), Positives = 23/43 (53%)

Query: 147 ILLRNQVTLIGFTLMFWCEFTASFLLFLNAISGLHINSITHPW 189
           +L R+++ L+ F ++ +      FLLFL  I   +  S+  PW
Sbjct: 18  VLQRDRIKLLFFDILVFLSVFLLFLLFLVDIMANNTTSLGSPW 60


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.331    0.142    0.456 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,282,518
Number of Sequences: 37866
Number of extensions: 225933
Number of successful extensions: 654
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 646
Number of HSP's gapped (non-prelim): 12
length of query: 190
length of database: 18,247,518
effective HSP length: 96
effective length of query: 94
effective length of database: 14,612,382
effective search space: 1373563908
effective search space used: 1373563908
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.