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Search of human proteins with 239741536
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741536 PREDICTED: hypothetical protein XP_002342231 [Homo
sapiens]
(189 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753104 PREDICTED: hypothetical protein [Homo sapiens] 404 e-113
gi|239747669 PREDICTED: hypothetical protein XP_002348226 [Homo ... 404 e-113
gi|239741536 PREDICTED: hypothetical protein XP_002342231 [Homo ... 404 e-113
gi|24431950 PRP4 pre-mRNA processing factor 4 homolog [Homo sapi... 32 0.33
gi|27544941 myosin IF [Homo sapiens] 29 2.8
gi|112382370 folate receptor 3 precursor [Homo sapiens] 28 4.7
gi|22749337 THAP domain containing 8 [Homo sapiens] 28 6.1
gi|166064056 folate receptor 2 precursor [Homo sapiens] 27 8.0
gi|166064054 folate receptor 2 precursor [Homo sapiens] 27 8.0
gi|166064052 folate receptor 2 precursor [Homo sapiens] 27 8.0
gi|166064050 folate receptor 2 precursor [Homo sapiens] 27 8.0
>gi|239753104 PREDICTED: hypothetical protein [Homo sapiens]
Length = 189
Score = 404 bits (1039), Expect = e-113
Identities = 189/189 (100%), Positives = 189/189 (100%)
Query: 1 MSSEVMPLPHTGLERTKNMQRAPLLARESLGGIMTEKQGGSLLHTLLQCCPSEKRAWLRA 60
MSSEVMPLPHTGLERTKNMQRAPLLARESLGGIMTEKQGGSLLHTLLQCCPSEKRAWLRA
Sbjct: 1 MSSEVMPLPHTGLERTKNMQRAPLLARESLGGIMTEKQGGSLLHTLLQCCPSEKRAWLRA 60
Query: 61 TTVESRSWSRNWPHCISMWVNCSSGVTVSVPIRVVDTRRGMGRACPLYSRWGLMPRGVLK 120
TTVESRSWSRNWPHCISMWVNCSSGVTVSVPIRVVDTRRGMGRACPLYSRWGLMPRGVLK
Sbjct: 61 TTVESRSWSRNWPHCISMWVNCSSGVTVSVPIRVVDTRRGMGRACPLYSRWGLMPRGVLK 120
Query: 121 PFSYTDFSRRSKAVSEAPHMGCCRLLQVPSCVRYFWWKHMSEQLFTRRWAVQPDRFAMRF 180
PFSYTDFSRRSKAVSEAPHMGCCRLLQVPSCVRYFWWKHMSEQLFTRRWAVQPDRFAMRF
Sbjct: 121 PFSYTDFSRRSKAVSEAPHMGCCRLLQVPSCVRYFWWKHMSEQLFTRRWAVQPDRFAMRF 180
Query: 181 RYCGDTRSL 189
RYCGDTRSL
Sbjct: 181 RYCGDTRSL 189
>gi|239747669 PREDICTED: hypothetical protein XP_002348226 [Homo
sapiens]
Length = 189
Score = 404 bits (1039), Expect = e-113
Identities = 189/189 (100%), Positives = 189/189 (100%)
Query: 1 MSSEVMPLPHTGLERTKNMQRAPLLARESLGGIMTEKQGGSLLHTLLQCCPSEKRAWLRA 60
MSSEVMPLPHTGLERTKNMQRAPLLARESLGGIMTEKQGGSLLHTLLQCCPSEKRAWLRA
Sbjct: 1 MSSEVMPLPHTGLERTKNMQRAPLLARESLGGIMTEKQGGSLLHTLLQCCPSEKRAWLRA 60
Query: 61 TTVESRSWSRNWPHCISMWVNCSSGVTVSVPIRVVDTRRGMGRACPLYSRWGLMPRGVLK 120
TTVESRSWSRNWPHCISMWVNCSSGVTVSVPIRVVDTRRGMGRACPLYSRWGLMPRGVLK
Sbjct: 61 TTVESRSWSRNWPHCISMWVNCSSGVTVSVPIRVVDTRRGMGRACPLYSRWGLMPRGVLK 120
Query: 121 PFSYTDFSRRSKAVSEAPHMGCCRLLQVPSCVRYFWWKHMSEQLFTRRWAVQPDRFAMRF 180
PFSYTDFSRRSKAVSEAPHMGCCRLLQVPSCVRYFWWKHMSEQLFTRRWAVQPDRFAMRF
Sbjct: 121 PFSYTDFSRRSKAVSEAPHMGCCRLLQVPSCVRYFWWKHMSEQLFTRRWAVQPDRFAMRF 180
Query: 181 RYCGDTRSL 189
RYCGDTRSL
Sbjct: 181 RYCGDTRSL 189
>gi|239741536 PREDICTED: hypothetical protein XP_002342231 [Homo
sapiens]
Length = 189
Score = 404 bits (1039), Expect = e-113
Identities = 189/189 (100%), Positives = 189/189 (100%)
Query: 1 MSSEVMPLPHTGLERTKNMQRAPLLARESLGGIMTEKQGGSLLHTLLQCCPSEKRAWLRA 60
MSSEVMPLPHTGLERTKNMQRAPLLARESLGGIMTEKQGGSLLHTLLQCCPSEKRAWLRA
Sbjct: 1 MSSEVMPLPHTGLERTKNMQRAPLLARESLGGIMTEKQGGSLLHTLLQCCPSEKRAWLRA 60
Query: 61 TTVESRSWSRNWPHCISMWVNCSSGVTVSVPIRVVDTRRGMGRACPLYSRWGLMPRGVLK 120
TTVESRSWSRNWPHCISMWVNCSSGVTVSVPIRVVDTRRGMGRACPLYSRWGLMPRGVLK
Sbjct: 61 TTVESRSWSRNWPHCISMWVNCSSGVTVSVPIRVVDTRRGMGRACPLYSRWGLMPRGVLK 120
Query: 121 PFSYTDFSRRSKAVSEAPHMGCCRLLQVPSCVRYFWWKHMSEQLFTRRWAVQPDRFAMRF 180
PFSYTDFSRRSKAVSEAPHMGCCRLLQVPSCVRYFWWKHMSEQLFTRRWAVQPDRFAMRF
Sbjct: 121 PFSYTDFSRRSKAVSEAPHMGCCRLLQVPSCVRYFWWKHMSEQLFTRRWAVQPDRFAMRF 180
Query: 181 RYCGDTRSL 189
RYCGDTRSL
Sbjct: 181 RYCGDTRSL 189
>gi|24431950 PRP4 pre-mRNA processing factor 4 homolog [Homo
sapiens]
Length = 522
Score = 32.0 bits (71), Expect = 0.33
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 120 KPFSYTDFSRRSKAVSEAPHMGCCRLLQVPSC 151
+P SY FS SK ++ A G C+L VP C
Sbjct: 232 RPISYCHFSPNSKMLATACWSGLCKLWSVPDC 263
>gi|27544941 myosin IF [Homo sapiens]
Length = 1098
Score = 28.9 bits (63), Expect = 2.8
Identities = 15/45 (33%), Positives = 19/45 (42%)
Query: 27 RESLGGIMTEKQGGSLLHTLLQCCPSEKRAWLRATTVESRSWSRN 71
R S G +KQ L+ TL++C P R T R W N
Sbjct: 555 RPSTAGSKIKKQANDLVATLMRCTPHYIRCIKPNETKRPRDWEEN 599
>gi|112382370 folate receptor 3 precursor [Homo sapiens]
Length = 245
Score = 28.1 bits (61), Expect = 4.7
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 48 QCCPSEKRAWLRATTVE------SRSWSRNWPHCISMWVNC 82
QC P +K A A+T + SR ++ NW HC M C
Sbjct: 56 QCSPWKKNACCTASTSQELHKDTSRLYNFNWDHCGKMEPTC 96
>gi|22749337 THAP domain containing 8 [Homo sapiens]
Length = 274
Score = 27.7 bits (60), Expect = 6.1
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 120 KPFSYTDFSRRSKAVSEA--PHMGCCRLLQVPSCVRYFWWKHMSEQLFTRRWAVQ 172
+P S+ F + +A HMGC VPSC ++ +H + F RW V+
Sbjct: 22 RPVSFYKFPLKDGPRLQAWLQHMGCEHW--VPSCHQHLCSEHFTPSCFQWRWGVR 74
>gi|166064056 folate receptor 2 precursor [Homo sapiens]
Length = 255
Score = 27.3 bits (59), Expect = 8.0
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 48 QCCPSEKRAWLRATTVE------SRSWSRNWPHCISMWVNC 82
QC P +K A A+T + SR ++ NW HC M C
Sbjct: 50 QCSPWKKNACCTASTSQELHKDTSRLYNFNWDHCGKMEPAC 90
>gi|166064054 folate receptor 2 precursor [Homo sapiens]
Length = 255
Score = 27.3 bits (59), Expect = 8.0
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 48 QCCPSEKRAWLRATTVE------SRSWSRNWPHCISMWVNC 82
QC P +K A A+T + SR ++ NW HC M C
Sbjct: 50 QCSPWKKNACCTASTSQELHKDTSRLYNFNWDHCGKMEPAC 90
>gi|166064052 folate receptor 2 precursor [Homo sapiens]
Length = 255
Score = 27.3 bits (59), Expect = 8.0
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 48 QCCPSEKRAWLRATTVE------SRSWSRNWPHCISMWVNC 82
QC P +K A A+T + SR ++ NW HC M C
Sbjct: 50 QCSPWKKNACCTASTSQELHKDTSRLYNFNWDHCGKMEPAC 90
>gi|166064050 folate receptor 2 precursor [Homo sapiens]
Length = 255
Score = 27.3 bits (59), Expect = 8.0
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 48 QCCPSEKRAWLRATTVE------SRSWSRNWPHCISMWVNC 82
QC P +K A A+T + SR ++ NW HC M C
Sbjct: 50 QCSPWKKNACCTASTSQELHKDTSRLYNFNWDHCGKMEPAC 90
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.134 0.461
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,527,654
Number of Sequences: 37866
Number of extensions: 318889
Number of successful extensions: 798
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 788
Number of HSP's gapped (non-prelim): 16
length of query: 189
length of database: 18,247,518
effective HSP length: 96
effective length of query: 93
effective length of database: 14,612,382
effective search space: 1358951526
effective search space used: 1358951526
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.