Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239741480
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741480 PREDICTED: hypothetical protein XP_002342211 [Homo
sapiens]
(85 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239741480 PREDICTED: hypothetical protein XP_002342211 [Homo ... 170 3e-43
gi|169172800 PREDICTED: similar to Putative uncharacterized prot... 166 4e-42
gi|239742767 PREDICTED: hypothetical protein XP_002342632 [Homo ... 166 4e-42
gi|239740988 PREDICTED: hypothetical protein XP_002342052 [Homo ... 166 4e-42
gi|239740978 PREDICTED: hypothetical protein XP_002344292 [Homo ... 166 4e-42
gi|239742771 PREDICTED: hypothetical protein XP_002342648 [Homo ... 94 2e-20
gi|153252198 septin 14 [Homo sapiens] 94 2e-20
gi|8922712 septin 11 [Homo sapiens] 44 3e-05
gi|149363664 septin 8 isoform d [Homo sapiens] 39 9e-04
gi|149363638 septin 8 isoform c [Homo sapiens] 39 9e-04
gi|149363689 septin 8 isoform a [Homo sapiens] 39 9e-04
gi|149363661 septin 8 isoform b [Homo sapiens] 39 9e-04
gi|30795193 septin 10 isoform 2 [Homo sapiens] 39 9e-04
gi|21945064 septin 10 isoform 1 [Homo sapiens] 39 9e-04
gi|21361478 septin 6 isoform B [Homo sapiens] 36 0.006
gi|22035581 septin 6 isoform D [Homo sapiens] 36 0.007
gi|22035579 septin 6 isoform A [Homo sapiens] 36 0.007
gi|22035577 septin 6 isoform A [Homo sapiens] 36 0.007
gi|56550047 uveal autoantigen with coiled-coil domains and ankyr... 32 0.11
gi|59850762 uveal autoantigen with coiled-coil domains and ankyr... 32 0.11
gi|239750312 PREDICTED: similar to hCG1744891 [Homo sapiens] 31 0.24
gi|4758462 glypican 3 [Homo sapiens] 31 0.24
gi|38044112 restin isoform b [Homo sapiens] 30 0.54
gi|4506751 restin isoform a [Homo sapiens] 30 0.54
gi|27477095 nuclear receptor binding SET domain protein 1 isofor... 29 0.70
gi|19923586 nuclear receptor binding SET domain protein 1 isofor... 29 0.70
gi|55770888 early endosome antigen 1, 162kD [Homo sapiens] 29 0.70
gi|78000213 DNA methyltransferase 1 associated protein 1 [Homo s... 29 0.91
gi|78000211 DNA methyltransferase 1 associated protein 1 [Homo s... 29 0.91
gi|13123776 DNA methyltransferase 1 associated protein 1 [Homo s... 29 0.91
>gi|239741480 PREDICTED: hypothetical protein XP_002342211 [Homo
sapiens]
Length = 85
Score = 170 bits (430), Expect = 3e-43
Identities = 85/85 (100%), Positives = 85/85 (100%)
Query: 1 MIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQLSTDTKKDKHPDPYEFLLLRKIK 60
MIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQLSTDTKKDKHPDPYEFLLLRKIK
Sbjct: 1 MIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQLSTDTKKDKHPDPYEFLLLRKIK 60
Query: 61 HPGFSEELTITLLIIQKHVADLSHF 85
HPGFSEELTITLLIIQKHVADLSHF
Sbjct: 61 HPGFSEELTITLLIIQKHVADLSHF 85
>gi|169172800 PREDICTED: similar to Putative uncharacterized
protein C20orf69 [Homo sapiens]
Length = 85
Score = 166 bits (420), Expect = 4e-42
Identities = 83/85 (97%), Positives = 84/85 (98%)
Query: 1 MIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQLSTDTKKDKHPDPYEFLLLRKIK 60
MIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQLSTDTKKDKHPDPYEFLLLRKIK
Sbjct: 1 MIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQLSTDTKKDKHPDPYEFLLLRKIK 60
Query: 61 HPGFSEELTITLLIIQKHVADLSHF 85
HPGF+EELTITLLIIQKHVA LSHF
Sbjct: 61 HPGFNEELTITLLIIQKHVAGLSHF 85
>gi|239742767 PREDICTED: hypothetical protein XP_002342632 [Homo
sapiens]
Length = 85
Score = 166 bits (420), Expect = 4e-42
Identities = 83/85 (97%), Positives = 84/85 (98%)
Query: 1 MIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQLSTDTKKDKHPDPYEFLLLRKIK 60
MIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQLSTDTKKDKHPDPYEFLLLRKIK
Sbjct: 1 MIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQLSTDTKKDKHPDPYEFLLLRKIK 60
Query: 61 HPGFSEELTITLLIIQKHVADLSHF 85
HPGF+EELTITLLIIQKHVA LSHF
Sbjct: 61 HPGFNEELTITLLIIQKHVAGLSHF 85
>gi|239740988 PREDICTED: hypothetical protein XP_002342052 [Homo
sapiens]
Length = 85
Score = 166 bits (420), Expect = 4e-42
Identities = 83/85 (97%), Positives = 84/85 (98%)
Query: 1 MIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQLSTDTKKDKHPDPYEFLLLRKIK 60
MIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQLSTDTKKDKHPDPYEFLLLRKIK
Sbjct: 1 MIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQLSTDTKKDKHPDPYEFLLLRKIK 60
Query: 61 HPGFSEELTITLLIIQKHVADLSHF 85
HPGF+EELTITLLIIQKHVA LSHF
Sbjct: 61 HPGFNEELTITLLIIQKHVAGLSHF 85
>gi|239740978 PREDICTED: hypothetical protein XP_002344292 [Homo
sapiens]
Length = 85
Score = 166 bits (420), Expect = 4e-42
Identities = 83/85 (97%), Positives = 84/85 (98%)
Query: 1 MIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQLSTDTKKDKHPDPYEFLLLRKIK 60
MIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQLSTDTKKDKHPDPYEFLLLRKIK
Sbjct: 1 MIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQLSTDTKKDKHPDPYEFLLLRKIK 60
Query: 61 HPGFSEELTITLLIIQKHVADLSHF 85
HPGF+EELTITLLIIQKHVA LSHF
Sbjct: 61 HPGFNEELTITLLIIQKHVAGLSHF 85
>gi|239742771 PREDICTED: hypothetical protein XP_002342648 [Homo
sapiens]
Length = 81
Score = 94.0 bits (232), Expect = 2e-20
Identities = 47/47 (100%), Positives = 47/47 (100%)
Query: 1 MIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQLSTDTKKDKH 47
MIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQLSTDTKKDKH
Sbjct: 13 MIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQLSTDTKKDKH 59
>gi|153252198 septin 14 [Homo sapiens]
Length = 432
Score = 94.0 bits (232), Expect = 2e-20
Identities = 47/47 (100%), Positives = 47/47 (100%)
Query: 1 MIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQLSTDTKKDKH 47
MIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQLSTDTKKDKH
Sbjct: 383 MIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQLSTDTKKDKH 429
>gi|8922712 septin 11 [Homo sapiens]
Length = 429
Score = 43.9 bits (102), Expect = 3e-05
Identities = 23/47 (48%), Positives = 34/47 (72%), Gaps = 4/47 (8%)
Query: 4 QEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQL----STDTKKDK 46
QEE +K+E++KK+LE E+ +F K KAA++ LQ+Q + TKKDK
Sbjct: 375 QEEKKKVEDKKKELEEEVNNFQKKKAAAQLLQSQAQQSGAQQTKKDK 421
>gi|149363664 septin 8 isoform d [Homo sapiens]
Length = 369
Score = 38.9 bits (89), Expect = 9e-04
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 2 IQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQ 37
+ QEE RK+EE++++LE E F + KAA EALQ+Q
Sbjct: 316 VHQEEKRKVEEKRRELEEETNAFNRRKAAVEALQSQ 351
>gi|149363638 septin 8 isoform c [Homo sapiens]
Length = 442
Score = 38.9 bits (89), Expect = 9e-04
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 2 IQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQ 37
+ QEE RK+EE++++LE E F + KAA EALQ+Q
Sbjct: 376 VHQEEKRKVEEKRRELEEETNAFNRRKAAVEALQSQ 411
>gi|149363689 septin 8 isoform a [Homo sapiens]
Length = 483
Score = 38.9 bits (89), Expect = 9e-04
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 2 IQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQ 37
+ QEE RK+EE++++LE E F + KAA EALQ+Q
Sbjct: 376 VHQEEKRKVEEKRRELEEETNAFNRRKAAVEALQSQ 411
>gi|149363661 septin 8 isoform b [Homo sapiens]
Length = 429
Score = 38.9 bits (89), Expect = 9e-04
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 2 IQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQ 37
+ QEE RK+EE++++LE E F + KAA EALQ+Q
Sbjct: 376 VHQEEKRKVEEKRRELEEETNAFNRRKAAVEALQSQ 411
>gi|30795193 septin 10 isoform 2 [Homo sapiens]
Length = 431
Score = 38.9 bits (89), Expect = 9e-04
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 2 IQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQ----LSTDTKKDKHPDPYEFL 54
+ QEE KLEE+++ LE EII F K KA SE +Q ++ +KDK FL
Sbjct: 375 LHQEERMKLEEKRRLLEEEIIAFSKKKATSEIFHSQSFLATGSNLRKDKDRKNSNFL 431
>gi|21945064 septin 10 isoform 1 [Homo sapiens]
Length = 454
Score = 38.9 bits (89), Expect = 9e-04
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 2 IQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQ----LSTDTKKDKHPDPYEFL 54
+ QEE KLEE+++ LE EII F K KA SE +Q ++ +KDK FL
Sbjct: 398 LHQEERMKLEEKRRLLEEEIIAFSKKKATSEIFHSQSFLATGSNLRKDKDRKNSNFL 454
>gi|21361478 septin 6 isoform B [Homo sapiens]
Length = 434
Score = 36.2 bits (82), Expect = 0.006
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 9/56 (16%)
Query: 2 IQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQ---------LSTDTKKDKHP 48
+ Q+E +KLE++KK L+ E+ F + K A+E LQ+Q L D +K +P
Sbjct: 374 LHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQAGGSQTLKRDKEKKNNP 429
>gi|22035581 septin 6 isoform D [Homo sapiens]
Length = 429
Score = 35.8 bits (81), Expect = 0.007
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 2 IQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQ 37
+ Q+E +KLE++KK L+ E+ F + K A+E LQ+Q
Sbjct: 374 LHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQ 409
>gi|22035579 septin 6 isoform A [Homo sapiens]
Length = 427
Score = 35.8 bits (81), Expect = 0.007
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 2 IQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQ 37
+ Q+E +KLE++KK L+ E+ F + K A+E LQ+Q
Sbjct: 374 LHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQ 409
>gi|22035577 septin 6 isoform A [Homo sapiens]
Length = 427
Score = 35.8 bits (81), Expect = 0.007
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 2 IQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQ 37
+ Q+E +KLE++KK L+ E+ F + K A+E LQ+Q
Sbjct: 374 LHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQ 409
>gi|56550047 uveal autoantigen with coiled-coil domains and ankyrin
repeats isoform 2 [Homo sapiens]
Length = 1403
Score = 32.0 bits (71), Expect = 0.11
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 4 QEEIRKLEEEKKQLEG-EIIDFYKMKAASEALQTQLSTDTKK-----DKHPDPYEFLLLR 57
Q E++ ++ K+LE E++D K KA L+TQ+S+ +K K+ + E +L
Sbjct: 1192 QSEVQNTKQALKKLETREVVDLSKYKATKSDLETQISSLNEKLANLNRKYEEVCEEVLHA 1251
Query: 58 KIKHPGFSEELTITLLIIQKHVAD 81
K K +E + I++ + D
Sbjct: 1252 KKKEISAKDEKELLHFSIEQEIKD 1275
>gi|59850762 uveal autoantigen with coiled-coil domains and ankyrin
repeats isoform 1 [Homo sapiens]
Length = 1416
Score = 32.0 bits (71), Expect = 0.11
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 4 QEEIRKLEEEKKQLEG-EIIDFYKMKAASEALQTQLSTDTKK-----DKHPDPYEFLLLR 57
Q E++ ++ K+LE E++D K KA L+TQ+S+ +K K+ + E +L
Sbjct: 1205 QSEVQNTKQALKKLETREVVDLSKYKATKSDLETQISSLNEKLANLNRKYEEVCEEVLHA 1264
Query: 58 KIKHPGFSEELTITLLIIQKHVAD 81
K K +E + I++ + D
Sbjct: 1265 KKKEISAKDEKELLHFSIEQEIKD 1288
>gi|239750312 PREDICTED: similar to hCG1744891 [Homo sapiens]
Length = 154
Score = 30.8 bits (68), Expect = 0.24
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 4 QEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQLSTDTKKDKHPDPYEFLLLRKIK 60
Q+E KLEE+KK LE EI++ +K E +LS + PD + K++
Sbjct: 73 QQECEKLEEDKKMLEEEILN---LKTHMENNMVELSKLQEYKSEPDERAIQAVEKLE 126
>gi|4758462 glypican 3 [Homo sapiens]
Length = 580
Score = 30.8 bits (68), Expect = 0.24
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 20 EIIDFYKMKAASEALQTQLSTDTKKDKHPDPYEFLLLRKIKH 61
E+++ Y KAA ++ Q + K K P+P ++ K+KH
Sbjct: 427 ELVERYSQKAARNGMKNQFNLHELKMKGPEPVVSQIIDKLKH 468
>gi|38044112 restin isoform b [Homo sapiens]
Length = 1392
Score = 29.6 bits (65), Expect = 0.54
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 3 QQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQL------STDTKKDKHPD 49
QQE +K EEEKK+LE ++ D K S +L +T K KH +
Sbjct: 944 QQEAAKKHEEEKKELERKLSDLEKKMETSHNQCQELKARYERATSETKTKHEE 996
>gi|4506751 restin isoform a [Homo sapiens]
Length = 1427
Score = 29.6 bits (65), Expect = 0.54
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 3 QQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQL------STDTKKDKHPD 49
QQE +K EEEKK+LE ++ D K S +L +T K KH +
Sbjct: 979 QQEAAKKHEEEKKELERKLSDLEKKMETSHNQCQELKARYERATSETKTKHEE 1031
>gi|27477095 nuclear receptor binding SET domain protein 1 isoform a
[Homo sapiens]
Length = 2427
Score = 29.3 bits (64), Expect = 0.70
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 14 KKQLEGEIIDFYKMKAASEALQTQLSTDTKKDKHPDPYEFLLLRK 58
KK L+ F ++KA E QL D K DK P PY+ + + +
Sbjct: 1566 KKALQEAAARFEELKAQKEL--RQLQEDRKNDKKPPPYKHIKVNR 1608
>gi|19923586 nuclear receptor binding SET domain protein 1 isoform b
[Homo sapiens]
Length = 2696
Score = 29.3 bits (64), Expect = 0.70
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 14 KKQLEGEIIDFYKMKAASEALQTQLSTDTKKDKHPDPYEFLLLRK 58
KK L+ F ++KA E QL D K DK P PY+ + + +
Sbjct: 1835 KKALQEAAARFEELKAQKEL--RQLQEDRKNDKKPPPYKHIKVNR 1877
>gi|55770888 early endosome antigen 1, 162kD [Homo sapiens]
Length = 1411
Score = 29.3 bits (64), Expect = 0.70
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 2 IQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQLSTDTKKDKHPDPYEFLLLRKIKH 61
+ QE + EE +++ + + K+K EAL T+LS T KDK + L K +
Sbjct: 819 LSQETKIQHEELNNRIQTTVTELQKVKMEKEALMTELS--TVKDKLSKVSDSLKNSKSEF 876
Query: 62 PGFSEELTITLLIIQKHVADLSH 84
+++ +L ++K +L H
Sbjct: 877 EKENQKGKAAILDLEKTCKELKH 899
>gi|78000213 DNA methyltransferase 1 associated protein 1 [Homo
sapiens]
Length = 467
Score = 28.9 bits (63), Expect = 0.91
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 5 EEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQLSTDTKKDKHPDP 50
+E+RK+E KK+ E D K+ A++ Q T+ K K P
Sbjct: 249 QELRKIEARKKEREKRSQDLQKLITAADTTAEQRRTERKAPKKKLP 294
>gi|78000211 DNA methyltransferase 1 associated protein 1 [Homo
sapiens]
Length = 467
Score = 28.9 bits (63), Expect = 0.91
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 5 EEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQLSTDTKKDKHPDP 50
+E+RK+E KK+ E D K+ A++ Q T+ K K P
Sbjct: 249 QELRKIEARKKEREKRSQDLQKLITAADTTAEQRRTERKAPKKKLP 294
>gi|13123776 DNA methyltransferase 1 associated protein 1 [Homo
sapiens]
Length = 467
Score = 28.9 bits (63), Expect = 0.91
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 5 EEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQLSTDTKKDKHPDP 50
+E+RK+E KK+ E D K+ A++ Q T+ K K P
Sbjct: 249 QELRKIEARKKEREKRSQDLQKLITAADTTAEQRRTERKAPKKKLP 294
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.134 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,185,695
Number of Sequences: 37866
Number of extensions: 120890
Number of successful extensions: 1028
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 943
Number of HSP's gapped (non-prelim): 106
length of query: 85
length of database: 18,247,518
effective HSP length: 57
effective length of query: 28
effective length of database: 16,089,156
effective search space: 450496368
effective search space used: 450496368
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.