Search of human proteins with 239741343

Search of human proteins with 239741343

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239741343 PREDICTED: hypothetical protein XP_002342179 [Homo
sapiens]
         (146 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239747469 PREDICTED: hypothetical protein XP_002347541 [Homo ...   298   1e-81
gi|239741343 PREDICTED: hypothetical protein XP_002342179 [Homo ...   298   1e-81
gi|45439367 gap junction protein, gamma 2, 47kDa [Homo sapiens]        31   0.43 
gi|24308213 serine incorporator 1 [Homo sapiens]                       30   0.56 
gi|59710093 G-protein coupled receptor 112 [Homo sapiens]              28   2.8  
gi|4503355 dedicator of cytokinesis 1 [Homo sapiens]                   27   4.7  
gi|52627201 olfactory receptor, family 9, subfamily I, member 1 ...    27   4.7  
gi|35038528 PAS domain containing serine/threonine kinase [Homo ...    27   6.2  
gi|38348412 gap junction protein, beta 7, 25kDa [Homo sapiens]         27   8.0  

>gi|239747469 PREDICTED: hypothetical protein XP_002347541 [Homo
           sapiens]
          Length = 146

 Score =  298 bits (763), Expect = 1e-81
 Identities = 146/146 (100%), Positives = 146/146 (100%)

Query: 1   MQTKEMSPKNETEKPQGATVRVTTLWELSNPTLPVSCSGSKNFEHLQKVSNVNRVKLGFF 60
           MQTKEMSPKNETEKPQGATVRVTTLWELSNPTLPVSCSGSKNFEHLQKVSNVNRVKLGFF
Sbjct: 1   MQTKEMSPKNETEKPQGATVRVTTLWELSNPTLPVSCSGSKNFEHLQKVSNVNRVKLGFF 60

Query: 61  KEQWFTGLALGLCECLSFFPDLCPPLLQCFVSKEVAEDEVLKVIYFIIITCLLHSHLLQA 120
           KEQWFTGLALGLCECLSFFPDLCPPLLQCFVSKEVAEDEVLKVIYFIIITCLLHSHLLQA
Sbjct: 61  KEQWFTGLALGLCECLSFFPDLCPPLLQCFVSKEVAEDEVLKVIYFIIITCLLHSHLLQA 120

Query: 121 VLQGIHKIPEAEAVMTEDAILTKESR 146
           VLQGIHKIPEAEAVMTEDAILTKESR
Sbjct: 121 VLQGIHKIPEAEAVMTEDAILTKESR 146


>gi|239741343 PREDICTED: hypothetical protein XP_002342179 [Homo
           sapiens]
          Length = 146

 Score =  298 bits (763), Expect = 1e-81
 Identities = 146/146 (100%), Positives = 146/146 (100%)

Query: 1   MQTKEMSPKNETEKPQGATVRVTTLWELSNPTLPVSCSGSKNFEHLQKVSNVNRVKLGFF 60
           MQTKEMSPKNETEKPQGATVRVTTLWELSNPTLPVSCSGSKNFEHLQKVSNVNRVKLGFF
Sbjct: 1   MQTKEMSPKNETEKPQGATVRVTTLWELSNPTLPVSCSGSKNFEHLQKVSNVNRVKLGFF 60

Query: 61  KEQWFTGLALGLCECLSFFPDLCPPLLQCFVSKEVAEDEVLKVIYFIIITCLLHSHLLQA 120
           KEQWFTGLALGLCECLSFFPDLCPPLLQCFVSKEVAEDEVLKVIYFIIITCLLHSHLLQA
Sbjct: 61  KEQWFTGLALGLCECLSFFPDLCPPLLQCFVSKEVAEDEVLKVIYFIIITCLLHSHLLQA 120

Query: 121 VLQGIHKIPEAEAVMTEDAILTKESR 146
           VLQGIHKIPEAEAVMTEDAILTKESR
Sbjct: 121 VLQGIHKIPEAEAVMTEDAILTKESR 146


>gi|45439367 gap junction protein, gamma 2, 47kDa [Homo sapiens]
          Length = 439

 Score = 30.8 bits (68), Expect = 0.43
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 74  ECLSFFP---DLCPPLLQCFVSKEVAEDEVLKVIYFIIITCLL 113
           E   FFP     CP ++ CFVS+   +   L V+Y +   CLL
Sbjct: 238 EVRPFFPCSRQPCPHVVDCFVSRPTEKTVFLLVMYVVSCLCLL 280


>gi|24308213 serine incorporator 1 [Homo sapiens]
          Length = 453

 Score = 30.4 bits (67), Expect = 0.56
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 67  GLALGLCECLSFFPDLC--PPLLQCFVSKEVAEDEVLKVIYFIII---TCLLHSHLLQAV 121
           G  LGLC   S+ P LC   P L C          V ++IY + +    C+    L+  +
Sbjct: 2   GSVLGLCSMASWIPCLCGSAPCLLCRCCPSGNNSTVTRLIYALFLLVGVCVACVMLIPGM 61

Query: 122 LQGIHKIP 129
            + ++KIP
Sbjct: 62  EEQLNKIP 69


>gi|59710093 G-protein coupled receptor 112 [Homo sapiens]
          Length = 3080

 Score = 28.1 bits (61), Expect = 2.8
 Identities = 28/131 (21%), Positives = 48/131 (36%), Gaps = 3/131 (2%)

Query: 4    KEMSPKNETEKPQGATVRVTTLWELSNPTLPVSCSGSKNFEHLQKVSNVNRVKLGFFKEQ 63
            K++ P N       +  + T  W L+NPT        KN +     +    + +   K Q
Sbjct: 2379 KKLEPGNCKADETASKYKGTYKWLLTNPTETAQTRCIKNEDG--NATRFCSISINTGKSQ 2436

Query: 64   WFTGLALGLCECLSFFPDLCPPLLQCFVSKEVAEDEVLKVIYFIIITCLLHSHLLQAVLQ 123
            W        C+ L   PD    L    +S E AED    ++  I  +  L     + ++ 
Sbjct: 2437 WEKP-KFKQCKLLQELPDKIVDLANITISDENAEDVAEHILNLINESPALGKEETKIIVS 2495

Query: 124  GIHKIPEAEAV 134
             I  I + + +
Sbjct: 2496 KISDISQCDEI 2506


>gi|4503355 dedicator of cytokinesis 1 [Homo sapiens]
          Length = 1865

 Score = 27.3 bits (59), Expect = 4.7
 Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 6/79 (7%)

Query: 38   SGSKNFEHLQKVSNVNRVKLGF-FKEQWFTGLALGLCECLSFFPDLCPPLLQCFVSKEVA 96
            S +K  + L K  ++ R ++GF  ++ W+    LG  + + F P++  P+L+  +  E  
Sbjct: 1044 SSAKRAKILNKYGDMRR-QIGFEIRDMWYN---LGQHK-IKFIPEMVGPILEMTLIPETE 1098

Query: 97   EDEVLKVIYFIIITCLLHS 115
              +    I+F ++ C  HS
Sbjct: 1099 LRKATIPIFFDMMQCEFHS 1117


>gi|52627201 olfactory receptor, family 9, subfamily I, member 1
           [Homo sapiens]
          Length = 314

 Score = 27.3 bits (59), Expect = 4.7
 Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 21/103 (20%)

Query: 31  PTLPVSCSGSKNFE---------------------HLQKVSNVNRVKLGFFKEQWFTGLA 69
           P L ++CS + N E                     +L  +  + +VK    + + F+  A
Sbjct: 183 PLLKLACSDTANIEIVIIFFGNFVILANASVILISYLLIIKTILKVKSSGGRAKTFSTCA 242

Query: 70  LGLCECLSFFPDLCPPLLQCFVSKEVAEDEVLKVIYFIIITCL 112
             +     FF  L    LQ    K + ED+V+ V Y ++I  L
Sbjct: 243 SHITAVALFFGALIFMYLQSGSGKSLEEDKVVSVFYTVVIPML 285


>gi|35038528 PAS domain containing serine/threonine kinase [Homo
           sapiens]
          Length = 1323

 Score = 26.9 bits (58), Expect = 6.2
 Identities = 14/33 (42%), Positives = 17/33 (51%)

Query: 110 TCLLHSHLLQAVLQGIHKIPEAEAVMTEDAILT 142
           TCL+   L Q  L G   +P AE V TE   +T
Sbjct: 659 TCLIKEQLSQLSLAGALDVPHAELVPTECQAVT 691


>gi|38348412 gap junction protein, beta 7, 25kDa [Homo sapiens]
          Length = 223

 Score = 26.6 bits (57), Expect = 8.0
 Identities = 9/30 (30%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 83  CPPLLQCFVSKEVAEDEVLKVIYFIIITCL 112
           CP  + CF+SK    ++ + +++ +I +CL
Sbjct: 162 CPNTVDCFISKPT--EKTIFILFLVITSCL 189


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.135    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,697,928
Number of Sequences: 37866
Number of extensions: 225955
Number of successful extensions: 548
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 543
Number of HSP's gapped (non-prelim): 9
length of query: 146
length of database: 18,247,518
effective HSP length: 92
effective length of query: 54
effective length of database: 14,763,846
effective search space: 797247684
effective search space used: 797247684
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.