Search of human proteins with 239741295

Search of human proteins with 239741295

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239741295 PREDICTED: similar to PDE4DIP protein [Homo
sapiens]
         (66 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239741295 PREDICTED: similar to PDE4DIP protein [Homo sapiens]     134   2e-32
gi|4826898 profilin 1 [Homo sapiens]                                   94   2e-20
gi|4505751 profilin 2 isoform b [Homo sapiens]                         70   4e-13
gi|16753215 profilin 2 isoform a [Homo sapiens]                        69   8e-13
gi|71274140 profilin 3 [Homo sapiens]                                  42   1e-04

>gi|239741295 PREDICTED: similar to PDE4DIP protein [Homo sapiens]
          Length = 66

 Score =  134 bits (336), Expect = 2e-32
 Identities = 66/66 (100%), Positives = 66/66 (100%)

Query: 1  MNGLTLGGQKYTVVLDSLLQDGELTTDLCMKSISGAPTFNVIVTMTAKTLGLLMGKEGIH 60
          MNGLTLGGQKYTVVLDSLLQDGELTTDLCMKSISGAPTFNVIVTMTAKTLGLLMGKEGIH
Sbjct: 1  MNGLTLGGQKYTVVLDSLLQDGELTTDLCMKSISGAPTFNVIVTMTAKTLGLLMGKEGIH 60

Query: 61 GNFINK 66
          GNFINK
Sbjct: 61 GNFINK 66


>gi|4826898 profilin 1 [Homo sapiens]
          Length = 140

 Score = 94.0 bits (232), Expect = 2e-20
 Identities = 47/66 (71%), Positives = 52/66 (78%)

Query: 1   MNGLTLGGQKYTVVLDSLLQDGELTTDLCMKSISGAPTFNVIVTMTAKTLGLLMGKEGIH 60
           +NGLTLGGQK +V+ DSLLQDGE + DL  KS  GAPTFNV VT T KTL LLMGKEG+H
Sbjct: 61  VNGLTLGGQKCSVIRDSLLQDGEFSMDLRTKSTGGAPTFNVTVTKTDKTLVLLMGKEGVH 120

Query: 61  GNFINK 66
           G  INK
Sbjct: 121 GGLINK 126


>gi|4505751 profilin 2 isoform b [Homo sapiens]
          Length = 140

 Score = 70.1 bits (170), Expect = 4e-13
 Identities = 33/65 (50%), Positives = 44/65 (67%)

Query: 2   NGLTLGGQKYTVVLDSLLQDGELTTDLCMKSISGAPTFNVIVTMTAKTLGLLMGKEGIHG 61
           NGLTLG +K +V+ DSL  DG+ T D+  KS  G PT+NV V    + L ++MGKEG+HG
Sbjct: 62  NGLTLGAKKCSVIRDSLYVDGDCTMDIRTKSQGGEPTYNVAVGRAGRALVIVMGKEGVHG 121

Query: 62  NFINK 66
             +NK
Sbjct: 122 GTLNK 126


>gi|16753215 profilin 2 isoform a [Homo sapiens]
          Length = 140

 Score = 68.9 bits (167), Expect = 8e-13
 Identities = 33/65 (50%), Positives = 43/65 (66%)

Query: 2   NGLTLGGQKYTVVLDSLLQDGELTTDLCMKSISGAPTFNVIVTMTAKTLGLLMGKEGIHG 61
           NGLTLG +K +V+ DSL  DG+ T D+  KS  G PT+NV V    + L  +MGKEG+HG
Sbjct: 62  NGLTLGAKKCSVIRDSLYVDGDCTMDIRTKSQGGEPTYNVAVGRAGRVLVFVMGKEGVHG 121

Query: 62  NFINK 66
             +NK
Sbjct: 122 GGLNK 126


>gi|71274140 profilin 3 [Homo sapiens]
          Length = 137

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 3/64 (4%)

Query: 3   GLTLGGQKYTVVLDSLLQDGELTTDLCMKSISGAPTFNVIVTMTAKTLGLLMGKEGIHGN 62
           GL++GG++  V+ D LL +G+   D   K +       V V    + L +LMG+ G+HG 
Sbjct: 63  GLSVGGRRCCVIRDHLLAEGDGVLDARTKGLDARA---VCVGRAPRALLVLMGRRGVHGG 119

Query: 63  FINK 66
            +NK
Sbjct: 120 ILNK 123


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.137    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,134,257
Number of Sequences: 37866
Number of extensions: 62447
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 105
Number of HSP's gapped (non-prelim): 5
length of query: 66
length of database: 18,247,518
effective HSP length: 39
effective length of query: 27
effective length of database: 16,770,744
effective search space: 452810088
effective search space used: 452810088
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.