Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239741200
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741200 PREDICTED: hypothetical protein XP_002342096 [Homo
sapiens]
(97 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752837 PREDICTED: hypothetical protein [Homo sapiens] 199 5e-52
gi|239747375 PREDICTED: hypothetical protein [Homo sapiens] 199 5e-52
gi|239741200 PREDICTED: hypothetical protein XP_002342096 [Homo ... 199 5e-52
gi|34452707 bromodomain containing 8 isoform 2 [Homo sapiens] 27 3.5
gi|4759082 serum deprivation response protein [Homo sapiens] 26 6.0
gi|156627569 solute carrier family 34 (sodium phosphate), member... 26 6.0
gi|239756526 PREDICTED: hypothetical protein XP_002344924 [Homo ... 26 7.8
gi|239751053 PREDICTED: hypothetical protein XP_002347688 [Homo ... 26 7.8
gi|239745478 PREDICTED: hypothetical protein XP_002343503 [Homo ... 26 7.8
>gi|239752837 PREDICTED: hypothetical protein [Homo sapiens]
Length = 97
Score = 199 bits (505), Expect = 5e-52
Identities = 97/97 (100%), Positives = 97/97 (100%)
Query: 1 MGSLLCTCIIFCFLLLSLIHQDSQSGSWCMNTGVPSDLGAVLGHKRILQLVHSLLVDGSY 60
MGSLLCTCIIFCFLLLSLIHQDSQSGSWCMNTGVPSDLGAVLGHKRILQLVHSLLVDGSY
Sbjct: 1 MGSLLCTCIIFCFLLLSLIHQDSQSGSWCMNTGVPSDLGAVLGHKRILQLVHSLLVDGSY 60
Query: 61 AIVHEGAAQEDGQGEDPGVILVSHLLYISQTLGVQQN 97
AIVHEGAAQEDGQGEDPGVILVSHLLYISQTLGVQQN
Sbjct: 61 AIVHEGAAQEDGQGEDPGVILVSHLLYISQTLGVQQN 97
>gi|239747375 PREDICTED: hypothetical protein [Homo sapiens]
Length = 97
Score = 199 bits (505), Expect = 5e-52
Identities = 97/97 (100%), Positives = 97/97 (100%)
Query: 1 MGSLLCTCIIFCFLLLSLIHQDSQSGSWCMNTGVPSDLGAVLGHKRILQLVHSLLVDGSY 60
MGSLLCTCIIFCFLLLSLIHQDSQSGSWCMNTGVPSDLGAVLGHKRILQLVHSLLVDGSY
Sbjct: 1 MGSLLCTCIIFCFLLLSLIHQDSQSGSWCMNTGVPSDLGAVLGHKRILQLVHSLLVDGSY 60
Query: 61 AIVHEGAAQEDGQGEDPGVILVSHLLYISQTLGVQQN 97
AIVHEGAAQEDGQGEDPGVILVSHLLYISQTLGVQQN
Sbjct: 61 AIVHEGAAQEDGQGEDPGVILVSHLLYISQTLGVQQN 97
>gi|239741200 PREDICTED: hypothetical protein XP_002342096 [Homo
sapiens]
Length = 97
Score = 199 bits (505), Expect = 5e-52
Identities = 97/97 (100%), Positives = 97/97 (100%)
Query: 1 MGSLLCTCIIFCFLLLSLIHQDSQSGSWCMNTGVPSDLGAVLGHKRILQLVHSLLVDGSY 60
MGSLLCTCIIFCFLLLSLIHQDSQSGSWCMNTGVPSDLGAVLGHKRILQLVHSLLVDGSY
Sbjct: 1 MGSLLCTCIIFCFLLLSLIHQDSQSGSWCMNTGVPSDLGAVLGHKRILQLVHSLLVDGSY 60
Query: 61 AIVHEGAAQEDGQGEDPGVILVSHLLYISQTLGVQQN 97
AIVHEGAAQEDGQGEDPGVILVSHLLYISQTLGVQQN
Sbjct: 61 AIVHEGAAQEDGQGEDPGVILVSHLLYISQTLGVQQN 97
>gi|34452707 bromodomain containing 8 isoform 2 [Homo sapiens]
Length = 1235
Score = 26.9 bits (58), Expect = 3.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 56 VDGSYAIVHEGAAQEDGQGEDPGVILVSHL 85
V G EG AQ++ +GED G + VS +
Sbjct: 1031 VQGLLTESEEGEAQQESKGEDQGEVYVSEM 1060
>gi|4759082 serum deprivation response protein [Homo sapiens]
Length = 425
Score = 26.2 bits (56), Expect = 6.0
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 48 LQLVHSLLVDGSYAIVHEGAAQEDGQGEDPGVILV 82
L+ + +GSYA+ E A + DG P V+ V
Sbjct: 387 LEQAQKVRYEGSYALTSEEAERSDGDPVQPAVLQV 421
>gi|156627569 solute carrier family 34 (sodium phosphate), member 1
[Homo sapiens]
Length = 639
Score = 26.2 bits (56), Expect = 6.0
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 9 IIFCFLLL-SLIHQDSQSGSWCMNTGVPSDLGAVLGHKRILQLVHS 53
++ CFLLL SL+ S +G W + GV + GA+L ++ ++ S
Sbjct: 519 LLVCFLLLPSLVFGISMAG-WQVMVGVGTPFGALLAFVVLINVLQS 563
>gi|239756526 PREDICTED: hypothetical protein XP_002344924 [Homo
sapiens]
Length = 503
Score = 25.8 bits (55), Expect = 7.8
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 55 LVDGSYAIVHEGAAQEDGQGEDPGVILVSH-----LLYISQ 90
L +G+ A +H G Q+ G E P V L H L ++SQ
Sbjct: 123 LAEGTDAQLHHGGLQDAGNWERPSVYLNLHRPDRWLFWLSQ 163
>gi|239751053 PREDICTED: hypothetical protein XP_002347688 [Homo
sapiens]
Length = 441
Score = 25.8 bits (55), Expect = 7.8
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 55 LVDGSYAIVHEGAAQEDGQGEDPGVILVSH-----LLYISQ 90
L +G+ A +H G Q+ G E P V L H L ++SQ
Sbjct: 123 LAEGTDAQLHHGGLQDAGNWERPSVYLNLHRPDRWLFWLSQ 163
>gi|239745478 PREDICTED: hypothetical protein XP_002343503 [Homo
sapiens]
Length = 441
Score = 25.8 bits (55), Expect = 7.8
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 55 LVDGSYAIVHEGAAQEDGQGEDPGVILVSH-----LLYISQ 90
L +G+ A +H G Q+ G E P V L H L ++SQ
Sbjct: 123 LAEGTDAQLHHGGLQDAGNWERPSVYLNLHRPDRWLFWLSQ 163
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.140 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,850,252
Number of Sequences: 37866
Number of extensions: 156796
Number of successful extensions: 307
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 302
Number of HSP's gapped (non-prelim): 9
length of query: 97
length of database: 18,247,518
effective HSP length: 68
effective length of query: 29
effective length of database: 15,672,630
effective search space: 454506270
effective search space used: 454506270
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.