Search of human proteins with 239741090

Search of human proteins with 239741090

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239741090 PREDICTED: hypothetical protein XP_002342077 [Homo
sapiens]
         (51 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239741090 PREDICTED: hypothetical protein XP_002342077 [Homo ...   107   2e-24
gi|88853059 diphthamide biosynthesis protein 2 isoform b [Homo s...    30   0.41 
gi|21536476 diphthamide biosynthesis protein 2 isoform a [Homo s...    30   0.41 
gi|16507200 ubiquitin specific protease 28 [Homo sapiens]              28   1.2  
gi|26051273 voltage-gated potassium channel, subfamily H, member...    27   4.5  
gi|4557729 voltage-gated potassium channel, subfamily H, member ...    27   4.5  

>gi|239741090 PREDICTED: hypothetical protein XP_002342077 [Homo
          sapiens]
          Length = 51

 Score =  107 bits (268), Expect = 2e-24
 Identities = 51/51 (100%), Positives = 51/51 (100%)

Query: 1  MKRLKATLLQLCLRKFEVRKPKPRAAITVRSWPTARMPRAPFDPLRKRHSG 51
          MKRLKATLLQLCLRKFEVRKPKPRAAITVRSWPTARMPRAPFDPLRKRHSG
Sbjct: 1  MKRLKATLLQLCLRKFEVRKPKPRAAITVRSWPTARMPRAPFDPLRKRHSG 51


>gi|88853059 diphthamide biosynthesis protein 2 isoform b [Homo
           sapiens]
          Length = 261

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 11/31 (35%), Positives = 20/31 (64%)

Query: 3   RLKATLLQLCLRKFEVRKPKPRAAITVRSWP 33
           R ++  L+LC++ FE + P P+A + + S P
Sbjct: 125 RQRSVALELCVKAFEAQNPDPKAPVVLLSEP 155


>gi|21536476 diphthamide biosynthesis protein 2 isoform a [Homo
           sapiens]
          Length = 489

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 11/31 (35%), Positives = 20/31 (64%)

Query: 3   RLKATLLQLCLRKFEVRKPKPRAAITVRSWP 33
           R ++  L+LC++ FE + P P+A + + S P
Sbjct: 125 RQRSVALELCVKAFEAQNPDPKAPVVLLSEP 155


>gi|16507200 ubiquitin specific protease 28 [Homo sapiens]
          Length = 1077

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 15/35 (42%), Positives = 18/35 (51%)

Query: 9    LQLCLRKFEVRKPKPRAAITVRSWPTARMPRAPFD 43
            LQLCL +F  R   P A I V   P    P +P+D
Sbjct: 1022 LQLCLGEFLPRLLDPSAEIIVLKEPPTIRPNSPYD 1056


>gi|26051273 voltage-gated potassium channel, subfamily H, member 2
           isoform c [Homo sapiens]
          Length = 819

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 15/40 (37%), Positives = 19/40 (47%)

Query: 6   ATLLQLCLRKFEVRKPKPRAAITVRSWPTARMPRAPFDPL 45
           AT+LQL  R+  +  P   A  T    PT+  P  P  PL
Sbjct: 721 ATVLQLLQRQMTLVPPAYSAVTTPGPGPTSTSPLLPVSPL 760


>gi|4557729 voltage-gated potassium channel, subfamily H, member 2
            isoform a [Homo sapiens]
          Length = 1159

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 15/40 (37%), Positives = 19/40 (47%)

Query: 6    ATLLQLCLRKFEVRKPKPRAAITVRSWPTARMPRAPFDPL 45
            AT+LQL  R+  +  P   A  T    PT+  P  P  PL
Sbjct: 1061 ATVLQLLQRQMTLVPPAYSAVTTPGPGPTSTSPLLPVSPL 1100


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.327    0.137    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,131,779
Number of Sequences: 37866
Number of extensions: 65318
Number of successful extensions: 235
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 229
Number of HSP's gapped (non-prelim): 6
length of query: 51
length of database: 18,247,518
effective HSP length: 25
effective length of query: 26
effective length of database: 17,300,868
effective search space: 449822568
effective search space used: 449822568
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.