Search of human proteins with 239740928

Search of human proteins with 239740928

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239740928 PREDICTED: hypothetical protein XP_002344099 [Homo
sapiens]
         (82 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239740928 PREDICTED: hypothetical protein XP_002344099 [Homo ...   177   2e-45
gi|79749430 FRAS1-related extracellular matrix protein 2 precurs...    27   3.5  
gi|239755538 PREDICTED: hypothetical protein [Homo sapiens]            27   4.6  
gi|239749994 PREDICTED: hypothetical protein XP_002347233 [Homo ...    27   4.6  
gi|239744305 PREDICTED: hypothetical protein XP_002343094 [Homo ...    27   4.6  
gi|193794853 premature ovarian failure, 1B [Homo sapiens]              27   4.6  

>gi|239740928 PREDICTED: hypothetical protein XP_002344099 [Homo
          sapiens]
          Length = 82

 Score =  177 bits (449), Expect = 2e-45
 Identities = 82/82 (100%), Positives = 82/82 (100%)

Query: 1  MTCPGQEHPSLLQCYGTGEQCGYREKQQWHRSSQLDKNPGVSVVMLSVRPMTAWNRSCAA 60
          MTCPGQEHPSLLQCYGTGEQCGYREKQQWHRSSQLDKNPGVSVVMLSVRPMTAWNRSCAA
Sbjct: 1  MTCPGQEHPSLLQCYGTGEQCGYREKQQWHRSSQLDKNPGVSVVMLSVRPMTAWNRSCAA 60

Query: 61 GPDTTKNSQMKRYSRQELSRRA 82
          GPDTTKNSQMKRYSRQELSRRA
Sbjct: 61 GPDTTKNSQMKRYSRQELSRRA 82


>gi|79749430 FRAS1-related extracellular matrix protein 2 precursor
            [Homo sapiens]
          Length = 3169

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 13/39 (33%), Positives = 17/39 (43%)

Query: 15   YGTGEQCGYREKQQWHRSSQLDKNPGVSVVMLSVRPMTA 53
            Y   E  GY E Q W   + L K+  V+V      P +A
Sbjct: 2017 YSVDESAGYVEVQVWRTGTDLSKSSSVTVRSRKTDPPSA 2055


>gi|239755538 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 114

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 4/42 (9%)

Query: 28 QWHRSS----QLDKNPGVSVVMLSVRPMTAWNRSCAAGPDTT 65
          Q HR      Q+ +   + V   S  P +AW+RSC   P  T
Sbjct: 41 QGHRKEENLGQMVREGNLRVQDTSAHPHSAWHRSCGISPQRT 82


>gi|239749994 PREDICTED: hypothetical protein XP_002347233 [Homo
          sapiens]
          Length = 114

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 4/42 (9%)

Query: 28 QWHRSS----QLDKNPGVSVVMLSVRPMTAWNRSCAAGPDTT 65
          Q HR      Q+ +   + V   S  P +AW+RSC   P  T
Sbjct: 41 QGHRKEENLGQMVREGNLRVQDTSAHPHSAWHRSCGISPQRT 82


>gi|239744305 PREDICTED: hypothetical protein XP_002343094 [Homo
          sapiens]
          Length = 114

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 4/42 (9%)

Query: 28 QWHRSS----QLDKNPGVSVVMLSVRPMTAWNRSCAAGPDTT 65
          Q HR      Q+ +   + V   S  P +AW+RSC   P  T
Sbjct: 41 QGHRKEENLGQMVREGNLRVQDTSAHPHSAWHRSCGISPQRT 82


>gi|193794853 premature ovarian failure, 1B [Homo sapiens]
          Length = 589

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 7/48 (14%)

Query: 2  TCPGQEHPSLLQCYGTGEQCGYREKQQWHRSSQLDKNPGVSVVMLSVR 49
          +C  Q+ P +LQC      C       +H+SSQ  + P  +VV   VR
Sbjct: 13 SCGTQQLPEVLQCQPQHYHC-------YHQSSQAQQPPEKNVVYERVR 53


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.126    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,711,503
Number of Sequences: 37866
Number of extensions: 133777
Number of successful extensions: 263
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 258
Number of HSP's gapped (non-prelim): 6
length of query: 82
length of database: 18,247,518
effective HSP length: 54
effective length of query: 28
effective length of database: 16,202,754
effective search space: 453677112
effective search space used: 453677112
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.