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Search of human proteins with 239509113
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239509113 PREDICTED: hypothetical protein [Homo sapiens]
(134 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169171612 PREDICTED: hypothetical protein [Homo sapiens] 278 9e-76
gi|169172017 PREDICTED: hypothetical protein [Homo sapiens] 278 9e-76
gi|169171011 PREDICTED: hypothetical protein [Homo sapiens] 278 9e-76
gi|239509113 PREDICTED: hypothetical protein [Homo sapiens] 278 9e-76
gi|169171603 PREDICTED: hypothetical protein [Homo sapiens] 271 1e-73
gi|169171001 PREDICTED: hypothetical protein [Homo sapiens] 271 1e-73
gi|239509082 PREDICTED: hypothetical protein [Homo sapiens] 271 1e-73
gi|239753266 PREDICTED: hypothetical protein [Homo sapiens] 30 0.58
gi|239747819 PREDICTED: hypothetical protein XP_002348329 [Homo ... 30 0.58
gi|239741689 PREDICTED: hypothetical protein XP_002342281 [Homo ... 30 0.58
gi|41393593 aarF domain containing kinase 5 [Homo sapiens] 28 1.7
gi|24432009 poly (ADP-ribose) polymerase family, member 8 [Homo ... 27 6.4
>gi|169171612 PREDICTED: hypothetical protein [Homo sapiens]
Length = 134
Score = 278 bits (711), Expect = 9e-76
Identities = 134/134 (100%), Positives = 134/134 (100%)
Query: 1 MSLLIQPAVFSTLVWVSGARPVCTASAGSLPFAFCMGSTTIRSWWEIRGWEEQRLGRAEA 60
MSLLIQPAVFSTLVWVSGARPVCTASAGSLPFAFCMGSTTIRSWWEIRGWEEQRLGRAEA
Sbjct: 1 MSLLIQPAVFSTLVWVSGARPVCTASAGSLPFAFCMGSTTIRSWWEIRGWEEQRLGRAEA 60
Query: 61 GEALHNSSQAALSLWLSVGLGNCSFHPYIQAELWKRLPNGISSRVMHLPYPFIFIISPPL 120
GEALHNSSQAALSLWLSVGLGNCSFHPYIQAELWKRLPNGISSRVMHLPYPFIFIISPPL
Sbjct: 61 GEALHNSSQAALSLWLSVGLGNCSFHPYIQAELWKRLPNGISSRVMHLPYPFIFIISPPL 120
Query: 121 KKLSIFARTLTNRN 134
KKLSIFARTLTNRN
Sbjct: 121 KKLSIFARTLTNRN 134
>gi|169172017 PREDICTED: hypothetical protein [Homo sapiens]
Length = 134
Score = 278 bits (711), Expect = 9e-76
Identities = 134/134 (100%), Positives = 134/134 (100%)
Query: 1 MSLLIQPAVFSTLVWVSGARPVCTASAGSLPFAFCMGSTTIRSWWEIRGWEEQRLGRAEA 60
MSLLIQPAVFSTLVWVSGARPVCTASAGSLPFAFCMGSTTIRSWWEIRGWEEQRLGRAEA
Sbjct: 1 MSLLIQPAVFSTLVWVSGARPVCTASAGSLPFAFCMGSTTIRSWWEIRGWEEQRLGRAEA 60
Query: 61 GEALHNSSQAALSLWLSVGLGNCSFHPYIQAELWKRLPNGISSRVMHLPYPFIFIISPPL 120
GEALHNSSQAALSLWLSVGLGNCSFHPYIQAELWKRLPNGISSRVMHLPYPFIFIISPPL
Sbjct: 61 GEALHNSSQAALSLWLSVGLGNCSFHPYIQAELWKRLPNGISSRVMHLPYPFIFIISPPL 120
Query: 121 KKLSIFARTLTNRN 134
KKLSIFARTLTNRN
Sbjct: 121 KKLSIFARTLTNRN 134
>gi|169171011 PREDICTED: hypothetical protein [Homo sapiens]
Length = 134
Score = 278 bits (711), Expect = 9e-76
Identities = 134/134 (100%), Positives = 134/134 (100%)
Query: 1 MSLLIQPAVFSTLVWVSGARPVCTASAGSLPFAFCMGSTTIRSWWEIRGWEEQRLGRAEA 60
MSLLIQPAVFSTLVWVSGARPVCTASAGSLPFAFCMGSTTIRSWWEIRGWEEQRLGRAEA
Sbjct: 1 MSLLIQPAVFSTLVWVSGARPVCTASAGSLPFAFCMGSTTIRSWWEIRGWEEQRLGRAEA 60
Query: 61 GEALHNSSQAALSLWLSVGLGNCSFHPYIQAELWKRLPNGISSRVMHLPYPFIFIISPPL 120
GEALHNSSQAALSLWLSVGLGNCSFHPYIQAELWKRLPNGISSRVMHLPYPFIFIISPPL
Sbjct: 61 GEALHNSSQAALSLWLSVGLGNCSFHPYIQAELWKRLPNGISSRVMHLPYPFIFIISPPL 120
Query: 121 KKLSIFARTLTNRN 134
KKLSIFARTLTNRN
Sbjct: 121 KKLSIFARTLTNRN 134
>gi|239509113 PREDICTED: hypothetical protein [Homo sapiens]
Length = 134
Score = 278 bits (711), Expect = 9e-76
Identities = 134/134 (100%), Positives = 134/134 (100%)
Query: 1 MSLLIQPAVFSTLVWVSGARPVCTASAGSLPFAFCMGSTTIRSWWEIRGWEEQRLGRAEA 60
MSLLIQPAVFSTLVWVSGARPVCTASAGSLPFAFCMGSTTIRSWWEIRGWEEQRLGRAEA
Sbjct: 1 MSLLIQPAVFSTLVWVSGARPVCTASAGSLPFAFCMGSTTIRSWWEIRGWEEQRLGRAEA 60
Query: 61 GEALHNSSQAALSLWLSVGLGNCSFHPYIQAELWKRLPNGISSRVMHLPYPFIFIISPPL 120
GEALHNSSQAALSLWLSVGLGNCSFHPYIQAELWKRLPNGISSRVMHLPYPFIFIISPPL
Sbjct: 61 GEALHNSSQAALSLWLSVGLGNCSFHPYIQAELWKRLPNGISSRVMHLPYPFIFIISPPL 120
Query: 121 KKLSIFARTLTNRN 134
KKLSIFARTLTNRN
Sbjct: 121 KKLSIFARTLTNRN 134
>gi|169171603 PREDICTED: hypothetical protein [Homo sapiens]
Length = 134
Score = 271 bits (692), Expect = 1e-73
Identities = 130/134 (97%), Positives = 132/134 (98%)
Query: 1 MSLLIQPAVFSTLVWVSGARPVCTASAGSLPFAFCMGSTTIRSWWEIRGWEEQRLGRAEA 60
MSLLIQPAVFSTLVWVSGARPVCTASAGSLPFAFCM STT+RSWWEIRGWEEQRLGRAEA
Sbjct: 1 MSLLIQPAVFSTLVWVSGARPVCTASAGSLPFAFCMVSTTMRSWWEIRGWEEQRLGRAEA 60
Query: 61 GEALHNSSQAALSLWLSVGLGNCSFHPYIQAELWKRLPNGISSRVMHLPYPFIFIISPPL 120
GEALHNSSQA LSLWLSVGLGNCSFHPYIQAE+WKRLPNGISSRVMHLPYPFIFIISPPL
Sbjct: 61 GEALHNSSQAVLSLWLSVGLGNCSFHPYIQAEVWKRLPNGISSRVMHLPYPFIFIISPPL 120
Query: 121 KKLSIFARTLTNRN 134
KKLSIFARTLTNRN
Sbjct: 121 KKLSIFARTLTNRN 134
>gi|169171001 PREDICTED: hypothetical protein [Homo sapiens]
Length = 134
Score = 271 bits (692), Expect = 1e-73
Identities = 130/134 (97%), Positives = 132/134 (98%)
Query: 1 MSLLIQPAVFSTLVWVSGARPVCTASAGSLPFAFCMGSTTIRSWWEIRGWEEQRLGRAEA 60
MSLLIQPAVFSTLVWVSGARPVCTASAGSLPFAFCM STT+RSWWEIRGWEEQRLGRAEA
Sbjct: 1 MSLLIQPAVFSTLVWVSGARPVCTASAGSLPFAFCMVSTTMRSWWEIRGWEEQRLGRAEA 60
Query: 61 GEALHNSSQAALSLWLSVGLGNCSFHPYIQAELWKRLPNGISSRVMHLPYPFIFIISPPL 120
GEALHNSSQA LSLWLSVGLGNCSFHPYIQAE+WKRLPNGISSRVMHLPYPFIFIISPPL
Sbjct: 61 GEALHNSSQAVLSLWLSVGLGNCSFHPYIQAEVWKRLPNGISSRVMHLPYPFIFIISPPL 120
Query: 121 KKLSIFARTLTNRN 134
KKLSIFARTLTNRN
Sbjct: 121 KKLSIFARTLTNRN 134
>gi|239509082 PREDICTED: hypothetical protein [Homo sapiens]
Length = 134
Score = 271 bits (692), Expect = 1e-73
Identities = 130/134 (97%), Positives = 132/134 (98%)
Query: 1 MSLLIQPAVFSTLVWVSGARPVCTASAGSLPFAFCMGSTTIRSWWEIRGWEEQRLGRAEA 60
MSLLIQPAVFSTLVWVSGARPVCTASAGSLPFAFCM STT+RSWWEIRGWEEQRLGRAEA
Sbjct: 1 MSLLIQPAVFSTLVWVSGARPVCTASAGSLPFAFCMVSTTMRSWWEIRGWEEQRLGRAEA 60
Query: 61 GEALHNSSQAALSLWLSVGLGNCSFHPYIQAELWKRLPNGISSRVMHLPYPFIFIISPPL 120
GEALHNSSQA LSLWLSVGLGNCSFHPYIQAE+WKRLPNGISSRVMHLPYPFIFIISPPL
Sbjct: 61 GEALHNSSQAVLSLWLSVGLGNCSFHPYIQAEVWKRLPNGISSRVMHLPYPFIFIISPPL 120
Query: 121 KKLSIFARTLTNRN 134
KKLSIFARTLTNRN
Sbjct: 121 KKLSIFARTLTNRN 134
>gi|239753266 PREDICTED: hypothetical protein [Homo sapiens]
Length = 194
Score = 30.0 bits (66), Expect = 0.58
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 21/78 (26%)
Query: 42 RSWWEIR--------GWEEQRLGRAEAGEAL--------HNSSQAALS----LWLSVGLG 81
R WW R WE ++GRA G+AL +S A+L+ W G
Sbjct: 75 RRWWPQRDGTQPGSASWERSQVGRASTGDALALCLGWVADSSWNASLTSSRLAWGYSGDT 134
Query: 82 NC-SFHPYIQAELWKRLP 98
C F P LW +LP
Sbjct: 135 QCPGFRPPSPGSLWTQLP 152
>gi|239747819 PREDICTED: hypothetical protein XP_002348329 [Homo
sapiens]
Length = 183
Score = 30.0 bits (66), Expect = 0.58
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 21/78 (26%)
Query: 42 RSWWEIR--------GWEEQRLGRAEAGEAL--------HNSSQAALS----LWLSVGLG 81
R WW R WE ++GRA G+AL +S A+L+ W G
Sbjct: 64 RRWWPQRDGTQPGSASWERSQVGRASTGDALALCLGWVADSSWNASLTSSRLAWGYSGDT 123
Query: 82 NC-SFHPYIQAELWKRLP 98
C F P LW +LP
Sbjct: 124 QCPGFRPPSPGSLWTQLP 141
>gi|239741689 PREDICTED: hypothetical protein XP_002342281 [Homo
sapiens]
Length = 183
Score = 30.0 bits (66), Expect = 0.58
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 21/78 (26%)
Query: 42 RSWWEIR--------GWEEQRLGRAEAGEAL--------HNSSQAALS----LWLSVGLG 81
R WW R WE ++GRA G+AL +S A+L+ W G
Sbjct: 64 RRWWPQRDGTQPGSASWERSQVGRASTGDALALCLGWVADSSWNASLTSSRLAWGYSGDT 123
Query: 82 NC-SFHPYIQAELWKRLP 98
C F P LW +LP
Sbjct: 124 QCPGFRPPSPGSLWTQLP 141
>gi|41393593 aarF domain containing kinase 5 [Homo sapiens]
Length = 580
Score = 28.5 bits (62), Expect = 1.7
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 12/66 (18%)
Query: 44 WW----EIRGWEEQRLGRAEAGEALHNSSQAAL--------SLWLSVGLGNCSFHPYIQA 91
WW +RG EE G E A H + AL L++ +G G CSF+ +
Sbjct: 102 WWCTNVVLRGVEENSPGYLEVMSACHQRAADALVAGAISNGGLYVKLGQGLCSFNHLLPP 161
Query: 92 ELWKRL 97
E + L
Sbjct: 162 EYTRTL 167
>gi|24432009 poly (ADP-ribose) polymerase family, member 8 [Homo
sapiens]
Length = 854
Score = 26.6 bits (57), Expect = 6.4
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 96 RLPNGISSRVMHLPYPFIFIISPPLKK 122
+LP + MH P+ F+ + SPP K+
Sbjct: 654 KLPVNRQLKFMHTPHQFLLLSSPPAKE 680
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.135 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,254,267
Number of Sequences: 37866
Number of extensions: 203744
Number of successful extensions: 515
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 507
Number of HSP's gapped (non-prelim): 12
length of query: 134
length of database: 18,247,518
effective HSP length: 91
effective length of query: 43
effective length of database: 14,801,712
effective search space: 636473616
effective search space used: 636473616
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.