Guide to the Human Genome
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Name: C6orf136 Sequence: fasta or formatted (181aa) NCBI GI: 238624193
Description:

hypothetical protein LOC221545 isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {315aa} hypothetical protein LOC221545 isoform 1
alt prot {496aa} hypothetical protein LOC221545 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         10           2
 C cysteine            2.2          4           1
 D aspartate           3.9          7           1
 E glutamate           3.9          7           1
 F phenylalanine       3.9          7           1
 G glycine             3.9          7           1
 H histidine           3.9          7           1
 I isoleucine          2.8          5           1
 K lysine              4.4          8           2
 L leucine            18.2         33           2
 M methionine          1.1          2           1
 N asparagine          3.3          6           1
 P proline             7.2         13           2
 Q glutamine           3.3          6           1
 R arginine            9.4         17           2
 S serine              6.6         12           2
 T threonine           4.4          8           1
 V valine              3.9          7           1
 W tryptophan          2.2          4           1
 Y tyrosine            6.1         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC221545 isoform 2 
C6orf136              0.867   hypothetical protein LOC221545 isoform 3 
C6orf136              0.867   hypothetical protein LOC221545 isoform 1 
PLS3                  0.011   plastin 3 
PLS3                  0.011   plastin 3 
SOX13                 0.011   SRY-box 13 
USH2A                 0.008   usherin isoform B 
TMEM181               0.008   G protein-coupled receptor 178 
C21orf56              0.006   hypothetical protein LOC84221 isoform 1 
C21orf56              0.006   hypothetical protein LOC84221 isoform 2 
PGAP3                 0.006   per1-like domain containing 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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