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Search of human proteins with 23618848
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|23618848 SYS1 Golgi-localized integral membrane protein
homolog isoform a [Homo sapiens]
(156 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|23618848 SYS1 Golgi-localized integral membrane protein homol... 320 2e-88
gi|37620210 hypothetical protein LOC116228 [Homo sapiens] 30 1.1
gi|224809323 G protein-coupled receptor 56 isoform b precursor [... 28 4.1
gi|224809320 G protein-coupled receptor 56 isoform c precursor [... 28 4.1
gi|224809318 G protein-coupled receptor 56 isoform b precursor [... 28 4.1
gi|224809314 G protein-coupled receptor 56 isoform b precursor [... 28 4.1
gi|41584198 G protein-coupled receptor 56 isoform b precursor [H... 28 4.1
gi|41584202 G protein-coupled receptor 56 isoform b precursor [H... 28 4.1
gi|50511934 transmembrane 4 superfamily member 17 isoform b [Hom... 28 4.1
gi|54859560 transmembrane 4 superfamily member 17 isoform a [Hom... 28 4.1
gi|54859505 transmembrane 4 superfamily member 17 isoform c [Hom... 28 4.1
gi|239049391 membrane metallo-endopeptidase-like 1 [Homo sapiens] 27 5.4
gi|31317252 ankyrin repeat and FYVE domain containing 1 isoform ... 27 5.4
gi|110815813 ankyrin repeat and FYVE domain containing 1 isoform... 27 5.4
gi|21264583 transmembrane 4 superfamily member 9 [Homo sapiens] 27 9.2
>gi|23618848 SYS1 Golgi-localized integral membrane protein homolog
isoform a [Homo sapiens]
Length = 156
Score = 320 bits (821), Expect = 2e-88
Identities = 156/156 (100%), Positives = 156/156 (100%)
Query: 1 MAGQFRSYVWDPLLILSQIVLMQTVYYGSLGLWLALVDGLVRSSPSLDQMFDAEILGFST 60
MAGQFRSYVWDPLLILSQIVLMQTVYYGSLGLWLALVDGLVRSSPSLDQMFDAEILGFST
Sbjct: 1 MAGQFRSYVWDPLLILSQIVLMQTVYYGSLGLWLALVDGLVRSSPSLDQMFDAEILGFST 60
Query: 61 PPGRLSMMSFILNALTCALGLLYFIRRGKQCLDFTVTVHFFHLLGCWFYSSRFPSALTWW 120
PPGRLSMMSFILNALTCALGLLYFIRRGKQCLDFTVTVHFFHLLGCWFYSSRFPSALTWW
Sbjct: 61 PPGRLSMMSFILNALTCALGLLYFIRRGKQCLDFTVTVHFFHLLGCWFYSSRFPSALTWW 120
Query: 121 LVQAVCIALMAVIGEYLCMRTELKEIPLNSAPKSNV 156
LVQAVCIALMAVIGEYLCMRTELKEIPLNSAPKSNV
Sbjct: 121 LVQAVCIALMAVIGEYLCMRTELKEIPLNSAPKSNV 156
>gi|37620210 hypothetical protein LOC116228 [Homo sapiens]
Length = 118
Score = 29.6 bits (65), Expect = 1.1
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 54 EILGF----STPPGRLSMMSFILNALTCALGLLYFIRRGKQCLDFTVTVHFFHLLGCWFY 109
++LGF +TP R S++ L ++ G F R ++ D V LGCWF+
Sbjct: 17 KLLGFLDVENTPCARHSILYGSLGSVVAGFGHFLFTSRIRRSCDVGVGGFILVTLGCWFH 76
>gi|224809323 G protein-coupled receptor 56 isoform b precursor
[Homo sapiens]
Length = 687
Score = 27.7 bits (60), Expect = 4.1
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 65 LSMMSFILNALTCALGLLYFIRRGKQCLDFTVTVHFFHLLGCWFYSSRF----PSALT 118
LS + +++AL C + + ++ ++ D+T+ VH LL + + F P ALT
Sbjct: 406 LSYVGCVVSALACLVTIAAYLCSRRKPRDYTIKVHMNLLLAVFLLDTSFLLSEPVALT 463
>gi|224809320 G protein-coupled receptor 56 isoform c precursor
[Homo sapiens]
Length = 692
Score = 27.7 bits (60), Expect = 4.1
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 65 LSMMSFILNALTCALGLLYFIRRGKQCLDFTVTVHFFHLLGCWFYSSRF----PSALT 118
LS + +++AL C + + ++ ++ D+T+ VH LL + + F P ALT
Sbjct: 411 LSYVGCVVSALACLVTIAAYLCSRRKPRDYTIKVHMNLLLAVFLLDTSFLLSEPVALT 468
>gi|224809318 G protein-coupled receptor 56 isoform b precursor
[Homo sapiens]
Length = 687
Score = 27.7 bits (60), Expect = 4.1
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 65 LSMMSFILNALTCALGLLYFIRRGKQCLDFTVTVHFFHLLGCWFYSSRF----PSALT 118
LS + +++AL C + + ++ ++ D+T+ VH LL + + F P ALT
Sbjct: 406 LSYVGCVVSALACLVTIAAYLCSRRKPRDYTIKVHMNLLLAVFLLDTSFLLSEPVALT 463
>gi|224809314 G protein-coupled receptor 56 isoform b precursor
[Homo sapiens]
Length = 687
Score = 27.7 bits (60), Expect = 4.1
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 65 LSMMSFILNALTCALGLLYFIRRGKQCLDFTVTVHFFHLLGCWFYSSRF----PSALT 118
LS + +++AL C + + ++ ++ D+T+ VH LL + + F P ALT
Sbjct: 406 LSYVGCVVSALACLVTIAAYLCSRRKPRDYTIKVHMNLLLAVFLLDTSFLLSEPVALT 463
>gi|41584198 G protein-coupled receptor 56 isoform b precursor [Homo
sapiens]
Length = 687
Score = 27.7 bits (60), Expect = 4.1
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 65 LSMMSFILNALTCALGLLYFIRRGKQCLDFTVTVHFFHLLGCWFYSSRF----PSALT 118
LS + +++AL C + + ++ ++ D+T+ VH LL + + F P ALT
Sbjct: 406 LSYVGCVVSALACLVTIAAYLCSRRKPRDYTIKVHMNLLLAVFLLDTSFLLSEPVALT 463
>gi|41584202 G protein-coupled receptor 56 isoform b precursor [Homo
sapiens]
Length = 687
Score = 27.7 bits (60), Expect = 4.1
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 65 LSMMSFILNALTCALGLLYFIRRGKQCLDFTVTVHFFHLLGCWFYSSRF----PSALT 118
LS + +++AL C + + ++ ++ D+T+ VH LL + + F P ALT
Sbjct: 406 LSYVGCVVSALACLVTIAAYLCSRRKPRDYTIKVHMNLLLAVFLLDTSFLLSEPVALT 463
>gi|50511934 transmembrane 4 superfamily member 17 isoform b [Homo
sapiens]
Length = 329
Score = 27.7 bits (60), Expect = 4.1
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 12/87 (13%)
Query: 8 YVWDPLLILSQIVLMQTVYYGSLGLWLALVDGLVRSSPSLDQMFDAEILGFSTPPGRLSM 67
+ W +LS I + T G +WL +V G V S +LGF+ G L
Sbjct: 41 WAWGEKGVLSNISAL-TDLGGLDPVWLFVVVGGVMS-----------VLGFAGCIGALRE 88
Query: 68 MSFILNALTCALGLLYFIRRGKQCLDF 94
+F+L + LGL++F+ L F
Sbjct: 89 NTFLLKFFSVFLGLIFFLELATGILAF 115
>gi|54859560 transmembrane 4 superfamily member 17 isoform a [Homo
sapiens]
Length = 332
Score = 27.7 bits (60), Expect = 4.1
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 12/87 (13%)
Query: 8 YVWDPLLILSQIVLMQTVYYGSLGLWLALVDGLVRSSPSLDQMFDAEILGFSTPPGRLSM 67
+ W +LS I + T G +WL +V G V S +LGF+ G L
Sbjct: 41 WAWGEKGVLSNISAL-TDLGGLDPVWLFVVVGGVMS-----------VLGFAGCIGALRE 88
Query: 68 MSFILNALTCALGLLYFIRRGKQCLDF 94
+F+L + LGL++F+ L F
Sbjct: 89 NTFLLKFFSVFLGLIFFLELATGILAF 115
>gi|54859505 transmembrane 4 superfamily member 17 isoform c [Homo
sapiens]
Length = 266
Score = 27.7 bits (60), Expect = 4.1
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 12/87 (13%)
Query: 8 YVWDPLLILSQIVLMQTVYYGSLGLWLALVDGLVRSSPSLDQMFDAEILGFSTPPGRLSM 67
+ W +LS I + T G +WL +V G V S +LGF+ G L
Sbjct: 41 WAWGEKGVLSNISAL-TDLGGLDPVWLFVVVGGVMS-----------VLGFAGCIGALRE 88
Query: 68 MSFILNALTCALGLLYFIRRGKQCLDF 94
+F+L + LGL++F+ L F
Sbjct: 89 NTFLLKFFSVFLGLIFFLELATGILAF 115
>gi|239049391 membrane metallo-endopeptidase-like 1 [Homo sapiens]
Length = 779
Score = 27.3 bits (59), Expect = 5.4
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 63 GRLSMMSFILNALTCALGLLYFIRRGKQ 90
G L ++ ++ A ALG+LY RRGKQ
Sbjct: 27 GGLLLLLLLVTAALVALGVLYADRRGKQ 54
>gi|31317252 ankyrin repeat and FYVE domain containing 1 isoform 2
[Homo sapiens]
Length = 487
Score = 27.3 bits (59), Expect = 5.4
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 1 MAGQFRSYVWDPLLILSQIVLMQTVYYGSLGLWLALVDGLVRSSPSLDQMFDAEIL 56
MAG YV+ LL Q+ L + GS LWLA+ V S S++ D ++
Sbjct: 376 MAGN--EYVFSQLLQCKQLDLELKDHEGSTALWLAVQHITVSSDQSVNPFEDVPVV 429
>gi|110815813 ankyrin repeat and FYVE domain containing 1 isoform 1
[Homo sapiens]
Length = 1170
Score = 27.3 bits (59), Expect = 5.4
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 1 MAGQFRSYVWDPLLILSQIVLMQTVYYGSLGLWLALVDGLVRSSPSLDQMFDAEIL 56
MAG YV+ LL Q+ L + GS LWLA+ V S S++ D ++
Sbjct: 376 MAGN--EYVFSQLLQCKQLDLELKDHEGSTALWLAVQHITVSSDQSVNPFEDVPVV 429
>gi|21264583 transmembrane 4 superfamily member 9 [Homo sapiens]
Length = 268
Score = 26.6 bits (57), Expect = 9.2
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 12/78 (15%)
Query: 8 YVWDPLLILSQIVLMQTVYYGSLGLWLALVDGLVRSSPSLDQMFDAEILGFSTPPGRLSM 67
+ W+ +LS I + T G +WL LV G V MF ILGF+ G L
Sbjct: 39 WAWNEKGVLSNISSI-TDLGGFDPVWLFLVVGGV--------MF---ILGFAGCIGALRE 86
Query: 68 MSFILNALTCALGLLYFI 85
+F+L + LG+++F+
Sbjct: 87 NTFLLKFFSVFLGIIFFL 104
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.330 0.141 0.462
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,880,891
Number of Sequences: 37866
Number of extensions: 224128
Number of successful extensions: 499
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 488
Number of HSP's gapped (non-prelim): 15
length of query: 156
length of database: 18,247,518
effective HSP length: 94
effective length of query: 62
effective length of database: 14,688,114
effective search space: 910663068
effective search space used: 910663068
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.