Search of human proteins with 23510283

Search of human proteins with 23510283

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|23510283 elongation protein 3 homolog [Homo sapiens]
         (547 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|23510283 elongation protein 3 homolog [Homo sapiens]              1109   0.0  
gi|8922911 radical S-adenosyl methionine domain containing 1 [Ho...    37   0.061
gi|148612801 KIAA1009 protein [Homo sapiens]                           32   1.5  
gi|229892328 IQ motif containing C isoform 1 [Homo sapiens]            30   5.7  
gi|229892326 IQ motif containing C isoform 2 [Homo sapiens]            30   5.7  
gi|112734845 collagen, type XX, alpha 1 [Homo sapiens]                 29   9.7  

>gi|23510283 elongation protein 3 homolog [Homo sapiens]
          Length = 547

 Score = 1109 bits (2869), Expect = 0.0
 Identities = 547/547 (100%), Positives = 547/547 (100%)

Query: 1   MRQKRKGDLSPAELMMLTIGDVIKQLIEAHEQGKDIDLNKVKTKTAAKYGLSAQPRLVDI 60
           MRQKRKGDLSPAELMMLTIGDVIKQLIEAHEQGKDIDLNKVKTKTAAKYGLSAQPRLVDI
Sbjct: 1   MRQKRKGDLSPAELMMLTIGDVIKQLIEAHEQGKDIDLNKVKTKTAAKYGLSAQPRLVDI 60

Query: 61  IAAVPPQYRKVLMPKLKAKPIRTASGIAVVAVMCKPHRCPHISFTGNICVYCPGGPDSDF 120
           IAAVPPQYRKVLMPKLKAKPIRTASGIAVVAVMCKPHRCPHISFTGNICVYCPGGPDSDF
Sbjct: 61  IAAVPPQYRKVLMPKLKAKPIRTASGIAVVAVMCKPHRCPHISFTGNICVYCPGGPDSDF 120

Query: 121 EYSTQSYTGYEPTSMRAIRARYDPFLQTRHRIEQLKQLGHSVDKVEFIVMGGTFMALPEE 180
           EYSTQSYTGYEPTSMRAIRARYDPFLQTRHRIEQLKQLGHSVDKVEFIVMGGTFMALPEE
Sbjct: 121 EYSTQSYTGYEPTSMRAIRARYDPFLQTRHRIEQLKQLGHSVDKVEFIVMGGTFMALPEE 180

Query: 181 YRDYFIRNLHDALSGHTSNNIYEAVKYSERSLTKCIGITIETRPDYCMKRHLSDMLTYGC 240
           YRDYFIRNLHDALSGHTSNNIYEAVKYSERSLTKCIGITIETRPDYCMKRHLSDMLTYGC
Sbjct: 181 YRDYFIRNLHDALSGHTSNNIYEAVKYSERSLTKCIGITIETRPDYCMKRHLSDMLTYGC 240

Query: 241 TRLEIGVQSVYEDVARDTNRGHTVKAVCESFHLAKDSGFKVVAHMMPDLPNVGLERDIEQ 300
           TRLEIGVQSVYEDVARDTNRGHTVKAVCESFHLAKDSGFKVVAHMMPDLPNVGLERDIEQ
Sbjct: 241 TRLEIGVQSVYEDVARDTNRGHTVKAVCESFHLAKDSGFKVVAHMMPDLPNVGLERDIEQ 300

Query: 301 FTEFFENPAFRPDGLKLYPTLVIRGTGLYELWKSGRYKSYSPSDLVELVARILALVPPWT 360
           FTEFFENPAFRPDGLKLYPTLVIRGTGLYELWKSGRYKSYSPSDLVELVARILALVPPWT
Sbjct: 301 FTEFFENPAFRPDGLKLYPTLVIRGTGLYELWKSGRYKSYSPSDLVELVARILALVPPWT 360

Query: 361 RVYRVQRDIPMPLVSSGVEHGNLRELALARMKDLGIQCRDVRTREVGIQEIHHKVRPYQV 420
           RVYRVQRDIPMPLVSSGVEHGNLRELALARMKDLGIQCRDVRTREVGIQEIHHKVRPYQV
Sbjct: 361 RVYRVQRDIPMPLVSSGVEHGNLRELALARMKDLGIQCRDVRTREVGIQEIHHKVRPYQV 420

Query: 421 ELVRRDYVANGGWETFLSYEDPDQDILIGLLRLRKCSEETFRFELGGGVSIVRELHVYGS 480
           ELVRRDYVANGGWETFLSYEDPDQDILIGLLRLRKCSEETFRFELGGGVSIVRELHVYGS
Sbjct: 421 ELVRRDYVANGGWETFLSYEDPDQDILIGLLRLRKCSEETFRFELGGGVSIVRELHVYGS 480

Query: 481 VVPVSSRDPTKFQHQGFGMLLMEEAERIAREEHGSGKIAVISGVGTRNYYRKIGYRLQGP 540
           VVPVSSRDPTKFQHQGFGMLLMEEAERIAREEHGSGKIAVISGVGTRNYYRKIGYRLQGP
Sbjct: 481 VVPVSSRDPTKFQHQGFGMLLMEEAERIAREEHGSGKIAVISGVGTRNYYRKIGYRLQGP 540

Query: 541 YMVKMLK 547
           YMVKMLK
Sbjct: 541 YMVKMLK 547


>gi|8922911 radical S-adenosyl methionine domain containing 1 [Homo
           sapiens]
          Length = 442

 Score = 36.6 bits (83), Expect = 0.061
 Identities = 40/162 (24%), Positives = 65/162 (40%), Gaps = 11/162 (6%)

Query: 194 SGHTSNNIYEAVKYSERSLTKCIGITIETRPDYCMKRHLSDMLTYGCTRLEIGVQSVYED 253
           S HT   + EAV  +   L   + +T+E  P       L++    G  RL IG+QS+ + 
Sbjct: 105 SPHTVAAVLEAVAQAAH-LPADLEVTLEANPTSAPGSRLAEFGAAGVNRLSIGLQSLDDT 163

Query: 254 VARDTNRGHTVKAVCESFHLAKDS----GFKVVAHMMPDLPNVGLERDIEQFTEFFENPA 309
             R   R H   + C++     ++      +V   +M  LP   +   + Q  E   +  
Sbjct: 164 ELRLLGRTH---SACDALRTLAEARRLFPGRVSVDLMLGLPAQQVGPWLGQLQELLHH-- 218

Query: 310 FRPDGLKLYPTLVIRGTGLYELWKSGRYKSYSPSDLVELVAR 351
              D L LY   + RGT L+   + G   +  P    E+  R
Sbjct: 219 -CDDHLSLYQLSLERGTALFAQVQRGALPAPDPELAAEMYQR 259


>gi|148612801 KIAA1009 protein [Homo sapiens]
          Length = 1403

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 17/39 (43%), Positives = 23/39 (58%)

Query: 450  LLRLRKCSEETFRFELGGGVSIVRELHVYGSVVPVSSRD 488
            L +L+    E FR EL   + ++RELH  G VVPV+  D
Sbjct: 1358 LAQLKNRELEKFRTELDSILDVLRELHRQGVVVPVAFAD 1396


>gi|229892328 IQ motif containing C isoform 1 [Homo sapiens]
          Length = 546

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 13/39 (33%), Positives = 24/39 (61%)

Query: 374 VSSGVEHGNLRELALARMKDLGIQCRDVRTREVGIQEIH 412
           +S+  E  N++E++  ++      CR VRT+E+G+ E H
Sbjct: 422 LSALYEDSNIKEMSPRKLDHKEPDCRTVRTQELGLSEDH 460


>gi|229892326 IQ motif containing C isoform 2 [Homo sapiens]
          Length = 466

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 13/39 (33%), Positives = 24/39 (61%)

Query: 374 VSSGVEHGNLRELALARMKDLGIQCRDVRTREVGIQEIH 412
           +S+  E  N++E++  ++      CR VRT+E+G+ E H
Sbjct: 342 LSALYEDSNIKEMSPRKLDHKEPDCRTVRTQELGLSEDH 380


>gi|112734845 collagen, type XX, alpha 1 [Homo sapiens]
          Length = 1284

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 15/35 (42%), Positives = 17/35 (48%)

Query: 116 PDSDFEYSTQSYTGYEPTSMRAIRARYDPFLQTRH 150
           P  D+E S QS  G E +  R IRAR       RH
Sbjct: 528 PGRDYEVSVQSLRGPEGSEARGIRARTPTLAPPRH 562


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.139    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,086,912
Number of Sequences: 37866
Number of extensions: 950541
Number of successful extensions: 1847
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1841
Number of HSP's gapped (non-prelim): 6
length of query: 547
length of database: 18,247,518
effective HSP length: 107
effective length of query: 440
effective length of database: 14,195,856
effective search space: 6246176640
effective search space used: 6246176640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.