Search of human proteins with 22748799

Search of human proteins with 22748799

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|22748799 hypothetical protein LOC127281 [Homo sapiens]
         (198 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|22748799 hypothetical protein LOC127281 [Homo sapiens]             396   e-111
gi|148596959 hypothetical protein LOC84293 [Homo sapiens]              77   1e-14
gi|63054819 hypothetical protein LOC195827 [Homo sapiens]              63   2e-10
gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2, ...    30   1.0  
gi|187608777 NF-kappa-B inhibitor-like protein 2 [Homo sapiens]        28   6.7  
gi|7657665 zinc finger and BTB domain containing 32 [Homo sapiens]     28   6.7  
gi|203096856 kinesin family member 7 [Homo sapiens]                    27   8.7  

>gi|22748799 hypothetical protein LOC127281 [Homo sapiens]
          Length = 198

 Score =  396 bits (1018), Expect = e-111
 Identities = 198/198 (100%), Positives = 198/198 (100%)

Query: 1   MSTVDLARVGACILKHAVTGEAVELRSLWREHACVVAGLRRFGCVVCRWIAQDLSSLAGL 60
           MSTVDLARVGACILKHAVTGEAVELRSLWREHACVVAGLRRFGCVVCRWIAQDLSSLAGL
Sbjct: 1   MSTVDLARVGACILKHAVTGEAVELRSLWREHACVVAGLRRFGCVVCRWIAQDLSSLAGL 60

Query: 61  LDQHGVRLVGVGPEALGLQEFLDGDYFAGELYLDESKQLYKELGFKRYNSLSILPAALGK 120
           LDQHGVRLVGVGPEALGLQEFLDGDYFAGELYLDESKQLYKELGFKRYNSLSILPAALGK
Sbjct: 61  LDQHGVRLVGVGPEALGLQEFLDGDYFAGELYLDESKQLYKELGFKRYNSLSILPAALGK 120

Query: 121 PVRDVAAKAKAVGIQGNLSGDLLQSGGLLVVSKGGDKVLLHFVQKSPGDYVPKEHILQVL 180
           PVRDVAAKAKAVGIQGNLSGDLLQSGGLLVVSKGGDKVLLHFVQKSPGDYVPKEHILQVL
Sbjct: 121 PVRDVAAKAKAVGIQGNLSGDLLQSGGLLVVSKGGDKVLLHFVQKSPGDYVPKEHILQVL 180

Query: 181 GISAEVCASDPPQCDREV 198
           GISAEVCASDPPQCDREV
Sbjct: 181 GISAEVCASDPPQCDREV 198


>gi|148596959 hypothetical protein LOC84293 [Homo sapiens]
          Length = 229

 Score = 76.6 bits (187), Expect = 1e-14
 Identities = 57/155 (36%), Positives = 79/155 (50%), Gaps = 8/155 (5%)

Query: 26  RSLWREHACVVAGLRRFGCVVCRWIAQDLSSLAGLLDQHGVRLVGVGPEALGLQEFLDGD 85
           + LW ++  V+  +RR GC +CR  A DLSSL  +LDQ GV L  V  E +  +      
Sbjct: 67  KELWEKNGAVIMAVRRPGCFLCREEAADLSSLKSMLDQLGVPLYAVVKEHIRTEVKDFQP 126

Query: 86  YFAGELYLDESKQLYKELGFKRYNSLSILPAALGKPVRDVAAKAKAVGIQGNLSGDLLQS 145
           YF GE++LDE K+ Y   G +R   + +    LG  V     +A   G  GNL G+    
Sbjct: 127 YFKGEIFLDEKKKFY---GPQRRKMMFMGFIRLG--VWYNFFRAWNGGFSGNLEGEGFIL 181

Query: 146 GGLLVVSKGGDKVLLHFVQKSPGDYVPKEHILQVL 180
           GG+ VV  G   +LL   +K  GD   K ++L VL
Sbjct: 182 GGVFVVGSGKQGILLEHREKEFGD---KVNLLSVL 213


>gi|63054819 hypothetical protein LOC195827 [Homo sapiens]
          Length = 226

 Score = 62.8 bits (151), Expect = 2e-10
 Identities = 46/178 (25%), Positives = 84/178 (47%), Gaps = 24/178 (13%)

Query: 20  GEAVELRSLWREHACVVAGLRRFGCVVCRWIAQDLSSL-AGLLDQHGVRLVGVGPEAL-G 77
           G+ V   +L+RE   VV  +R F C +C+   +DL+ +    L +  V L+ +G  +   
Sbjct: 44  GQRVPFGALFRERRAVVVFVRHFLCYICKEYVEDLAKIPRSFLQEANVTLIVIGQSSYHH 103

Query: 78  LQEFLDGDYFAGELYLDESKQLYKELGFKRYNSL-----------SILPAALGKPVRDVA 126
           ++ F     ++ E+Y+D  +++YK LG KR   +           ++L  +L    R V 
Sbjct: 104 IEPFCKLTGYSHEIYVDPEREIYKRLGMKRGEEIASSGQSPHIKSNLLSGSLQSLWRAV- 162

Query: 127 AKAKAVGIQGNLSGDLLQSGGLLVVSKGGDKVLLHFVQKSPG--DYVPKEHILQVLGI 182
                 G   +  GD  Q GG L++  G +   +HF+ +     D+ P   +LQ++G+
Sbjct: 163 -----TGPLFDFQGDPAQQGGTLILGPGNN---IHFIHRDRNRLDHKPINSVLQLVGV 212


>gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2,
           64kDa, tau variant [Homo sapiens]
          Length = 616

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 5/69 (7%)

Query: 130 KAVGIQG-NLSGDLLQSGGLLVVSKGGDKVLLHFV----QKSPGDYVPKEHILQVLGISA 184
           +  GIQG ++ G  +Q GG+   SK G      F     Q +P D      I+QVL ++A
Sbjct: 529 QGAGIQGVSIQGGGIQGGGIQGASKQGGSQPSSFSPGQSQVTPQDQEKAALIMQVLQLTA 588

Query: 185 EVCASDPPQ 193
           +  A  PP+
Sbjct: 589 DQIAMLPPE 597


>gi|187608777 NF-kappa-B inhibitor-like protein 2 [Homo sapiens]
          Length = 1378

 Score = 27.7 bits (60), Expect = 6.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 79  QEFLDGDYFAGELYLDESKQLYKELGFKRYN 109
           Q  L  DYF   ++L E   LY++L   RYN
Sbjct: 177 QTALCNDYFRKSIFLAEQNHLYEDLFRARYN 207


>gi|7657665 zinc finger and BTB domain containing 32 [Homo sapiens]
          Length = 487

 Score = 27.7 bits (60), Expect = 6.7
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 17  AVTGEAVELRSLWREHACVVAGLRRFGCVVCRWIAQDLSSLAGLLDQHGV-----RLVGV 71
           +V G+   L+     H  V  G + F C +C   ++D S++   L  HG       L G 
Sbjct: 376 SVCGKRFSLKHQMETHYRVHTGEKPFSCSLCPQRSRDFSAMTKHLRTHGAAPYRCSLCGA 435

Query: 72  G-PEALGLQEFLDG 84
           G P    +Q  + G
Sbjct: 436 GCPSLASMQAHMRG 449


>gi|203096856 kinesin family member 7 [Homo sapiens]
          Length = 1343

 Score = 27.3 bits (59), Expect = 8.7
 Identities = 11/28 (39%), Positives = 14/28 (50%)

Query: 167 PGDYVPKEHILQVLGISAEVCASDPPQC 194
           PG +VP+ H   + G  A V    PP C
Sbjct: 556 PGSFVPRPHTAPLGGAHAHVLGMVPPAC 583


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.140    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,620,808
Number of Sequences: 37866
Number of extensions: 317923
Number of successful extensions: 834
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 825
Number of HSP's gapped (non-prelim): 8
length of query: 198
length of database: 18,247,518
effective HSP length: 97
effective length of query: 101
effective length of database: 14,574,516
effective search space: 1472026116
effective search space used: 1472026116
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.