Search of human proteins with 225543159

Search of human proteins with 225543159

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|225543159 translocase of inner mitochondrial membrane 8
homolog A isoform 2 [Homo sapiens]
         (48 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|225543159 translocase of inner mitochondrial membrane 8 homol...    99   6e-22
gi|4758152 translocase of inner mitochondrial membrane 8 homolog...    92   9e-20
gi|239752419 PREDICTED: similar to translocase of inner mitochon...    39   9e-04
gi|239746934 PREDICTED: similar to translocase of inner mitochon...    39   9e-04
gi|239757907 PREDICTED: similar to translocase of inner mitochon...    33   0.037
gi|6912712 translocase of inner mitochondrial membrane 8 homolog...    33   0.064

>gi|225543159 translocase of inner mitochondrial membrane 8
          homolog A isoform 2 [Homo sapiens]
          Length = 48

 Score = 99.4 bits (246), Expect = 6e-22
 Identities = 48/48 (100%), Positives = 48/48 (100%)

Query: 1  MDSSSSSSAAGLGAVDPQLQHFIEVETQKQRFQQLVHQMTELCWVPVA 48
          MDSSSSSSAAGLGAVDPQLQHFIEVETQKQRFQQLVHQMTELCWVPVA
Sbjct: 1  MDSSSSSSAAGLGAVDPQLQHFIEVETQKQRFQQLVHQMTELCWVPVA 48


>gi|4758152 translocase of inner mitochondrial membrane 8 homolog
          A isoform 1 [Homo sapiens]
          Length = 97

 Score = 92.0 bits (227), Expect = 9e-20
 Identities = 44/44 (100%), Positives = 44/44 (100%)

Query: 1  MDSSSSSSAAGLGAVDPQLQHFIEVETQKQRFQQLVHQMTELCW 44
          MDSSSSSSAAGLGAVDPQLQHFIEVETQKQRFQQLVHQMTELCW
Sbjct: 1  MDSSSSSSAAGLGAVDPQLQHFIEVETQKQRFQQLVHQMTELCW 44


>gi|239752419 PREDICTED: similar to translocase of inner
          mitochondrial membrane 8 homolog B [Homo sapiens]
          Length = 116

 Score = 38.9 bits (89), Expect = 9e-04
 Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 3  SSSSSSAAGLGAVD-PQLQHFIEVETQKQRFQQLVHQMTELCW 44
          S+S+   A LG  D  +LQH +  E QK +F   VH   ELCW
Sbjct: 28 SASTELTAELGEADGAELQHLVAAEQQKAQFTAQVHHFMELCW 70


>gi|239746934 PREDICTED: similar to translocase of inner
          mitochondrial membrane 8 homolog B [Homo sapiens]
          Length = 116

 Score = 38.9 bits (89), Expect = 9e-04
 Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 3  SSSSSSAAGLGAVD-PQLQHFIEVETQKQRFQQLVHQMTELCW 44
          S+S+   A LG  D  +LQH +  E QK +F   VH   ELCW
Sbjct: 28 SASTELTAELGEADGAELQHLVAAEQQKAQFTAQVHHFMELCW 70


>gi|239757907 PREDICTED: similar to translocase of inner
          mitochondrial membrane 8 homolog B (yeast) [Homo
          sapiens]
          Length = 136

 Score = 33.5 bits (75), Expect = 0.037
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 10 AGLGAVD-PQLQHFIEVETQKQRFQQLVHQMTELCW 44
          A LG  D  + QH +  E QK +F   VH   ELCW
Sbjct: 55 AELGEADGAESQHLVAAEQQKAQFTAQVHHFMELCW 90


>gi|6912712 translocase of inner mitochondrial membrane 8 homolog
          B [Homo sapiens]
          Length = 83

 Score = 32.7 bits (73), Expect = 0.064
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 10 AGLGAVDP-QLQHFIEVETQKQRFQQLVHQMTELCW 44
          A LG  D  +LQ  +  E QK +F   VH   ELCW
Sbjct: 2  AELGEADEAELQRLVAAEQQKAQFTAQVHHFMELCW 37


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.125    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,604,439
Number of Sequences: 37866
Number of extensions: 40154
Number of successful extensions: 167
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 161
Number of HSP's gapped (non-prelim): 6
length of query: 48
length of database: 18,247,518
effective HSP length: 22
effective length of query: 26
effective length of database: 17,414,466
effective search space: 452776116
effective search space used: 452776116
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.