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Search of human proteins with 115511024
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|115511024 lipase maturation factor 1 [Homo sapiens]
(567 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|115511024 lipase maturation factor 1 [Homo sapiens] 1195 0.0
gi|24308356 lipase maturation factor 2 [Homo sapiens] 151 2e-36
gi|52693931 olfactory receptor, family 4, subfamily F, member 6 ... 32 1.6
gi|169171347 PREDICTED: hypothetical protein [Homo sapiens] 32 2.0
gi|239756380 PREDICTED: hypothetical protein [Homo sapiens] 30 5.9
gi|239750901 PREDICTED: hypothetical protein XP_002347602 [Homo ... 30 5.9
gi|239745293 PREDICTED: hypothetical protein XP_002343426 [Homo ... 30 5.9
gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 30 7.7
gi|239755579 PREDICTED: hypothetical protein [Homo sapiens] 30 7.7
gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 30 7.7
gi|239750107 PREDICTED: hypothetical protein XP_002347294 [Homo ... 30 7.7
gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 30 7.7
gi|239744411 PREDICTED: hypothetical protein XP_002343156 [Homo ... 30 7.7
>gi|115511024 lipase maturation factor 1 [Homo sapiens]
Length = 567
Score = 1195 bits (3092), Expect = 0.0
Identities = 567/567 (100%), Positives = 567/567 (100%)
Query: 1 MRPDSPTMAAPAESLRRRKTGYSDPEPESPPAPGRGPAGSPAHLHTGTFWLTRIVLLKAL 60
MRPDSPTMAAPAESLRRRKTGYSDPEPESPPAPGRGPAGSPAHLHTGTFWLTRIVLLKAL
Sbjct: 1 MRPDSPTMAAPAESLRRRKTGYSDPEPESPPAPGRGPAGSPAHLHTGTFWLTRIVLLKAL 60
Query: 61 AFVYFVAFLVAFHQNKQLIGDRGLLPCRVFLKNFQQYFQDRTSWEVFSYMPTILWLMDWS 120
AFVYFVAFLVAFHQNKQLIGDRGLLPCRVFLKNFQQYFQDRTSWEVFSYMPTILWLMDWS
Sbjct: 61 AFVYFVAFLVAFHQNKQLIGDRGLLPCRVFLKNFQQYFQDRTSWEVFSYMPTILWLMDWS 120
Query: 121 DMNSNLDLLALLGLGISSFVLITGCANMLLMAALWGLYMSLVNVGHVWYSFGWESQLLET 180
DMNSNLDLLALLGLGISSFVLITGCANMLLMAALWGLYMSLVNVGHVWYSFGWESQLLET
Sbjct: 121 DMNSNLDLLALLGLGISSFVLITGCANMLLMAALWGLYMSLVNVGHVWYSFGWESQLLET 180
Query: 181 GFLGIFLCPLWTLSRLPQHTPTSRIVLWGFRWLIFRIMLGAGLIKIRGDRCWRDLTCMDF 240
GFLGIFLCPLWTLSRLPQHTPTSRIVLWGFRWLIFRIMLGAGLIKIRGDRCWRDLTCMDF
Sbjct: 181 GFLGIFLCPLWTLSRLPQHTPTSRIVLWGFRWLIFRIMLGAGLIKIRGDRCWRDLTCMDF 240
Query: 241 HYETQPMPNPVAYYLHHSPWWFHRFETLSNHFIELLVPFFLFLGRRACIIHGVLQILFQA 300
HYETQPMPNPVAYYLHHSPWWFHRFETLSNHFIELLVPFFLFLGRRACIIHGVLQILFQA
Sbjct: 241 HYETQPMPNPVAYYLHHSPWWFHRFETLSNHFIELLVPFFLFLGRRACIIHGVLQILFQA 300
Query: 301 VLIVSGNLSFLNWLTMVPSLACFDDATLGFLFPSGPGSLKDRVLQMQRDIRGARPEPRFG 360
VLIVSGNLSFLNWLTMVPSLACFDDATLGFLFPSGPGSLKDRVLQMQRDIRGARPEPRFG
Sbjct: 301 VLIVSGNLSFLNWLTMVPSLACFDDATLGFLFPSGPGSLKDRVLQMQRDIRGARPEPRFG 360
Query: 361 SVVRRAANVSLGVLLAWLSVPVVLNLLSSRQVMNTHFNSLHIVNTYGAFGSITKERAEVI 420
SVVRRAANVSLGVLLAWLSVPVVLNLLSSRQVMNTHFNSLHIVNTYGAFGSITKERAEVI
Sbjct: 361 SVVRRAANVSLGVLLAWLSVPVVLNLLSSRQVMNTHFNSLHIVNTYGAFGSITKERAEVI 420
Query: 421 LQGTASSNASAPDAMWEDYEFKCKPGDPSRRPCLISPYHYRLDWLMWFAAFQTYEHNDWI 480
LQGTASSNASAPDAMWEDYEFKCKPGDPSRRPCLISPYHYRLDWLMWFAAFQTYEHNDWI
Sbjct: 421 LQGTASSNASAPDAMWEDYEFKCKPGDPSRRPCLISPYHYRLDWLMWFAAFQTYEHNDWI 480
Query: 481 IHLAGKLLASDAEALSLLAHNPFAGRPPPRWVRGEHYRYKFSRPGGRHAAEGKWWVRKRI 540
IHLAGKLLASDAEALSLLAHNPFAGRPPPRWVRGEHYRYKFSRPGGRHAAEGKWWVRKRI
Sbjct: 481 IHLAGKLLASDAEALSLLAHNPFAGRPPPRWVRGEHYRYKFSRPGGRHAAEGKWWVRKRI 540
Query: 541 GAYFPPLSLEELRPYFRDRGWPLPGPL 567
GAYFPPLSLEELRPYFRDRGWPLPGPL
Sbjct: 541 GAYFPPLSLEELRPYFRDRGWPLPGPL 567
>gi|24308356 lipase maturation factor 2 [Homo sapiens]
Length = 682
Score = 151 bits (381), Expect = 2e-36
Identities = 92/265 (34%), Positives = 138/265 (52%), Gaps = 20/265 (7%)
Query: 78 LIGDRGLLPCRVFLKNFQQYFQDRTSWEVFSYMPTILWLMD--WSDMNSNLDLLALLGLG 135
L G G+LP R L+ Q + W+ PT+LW D L+LL+LLG
Sbjct: 8 LYGPEGILPARRTLRP-----QGKGRWQQLWETPTLLWEAPRLGLDTAQGLELLSLLGAL 62
Query: 136 IS-SFVLITGCANMLLMAALWGLYMSLVNVGHVWYSFGWESQLLETGFLGIFLCPLWTLS 194
++ +L++ + ++ LW Y+S VG V+ F W+S LLETGFL + + PL S
Sbjct: 63 VALGALLLSPLRHPVIYLLLWAAYLSACQVGQVFLYFQWDSLLLETGFLAVLVAPLRPAS 122
Query: 195 R---LPQHT-----PTSRIVLWGFRWLIFRIMLGAGLIKIRGDRC--WRDLTCMDFHYET 244
PQ P + W RWL+FR+M +G++K+ RC W LT + +HYET
Sbjct: 123 HRKEAPQGRQAGALPHEDLPFWLVRWLLFRLMFASGVVKLTS-RCPAWWGLTALTYHYET 181
Query: 245 QPMPNPVAYYLHHSPWWFHRFETLSNHFIELLVPFFLFLG-RRACIIHGVLQILFQAVLI 303
Q +P P A++ HH P W H+ ++ IE+ VP F RR + Q+L Q ++I
Sbjct: 182 QCLPTPAAWFAHHLPVWLHKLSVVATFLIEIAVPPLFFAPIRRLRLAAFYSQVLLQVLII 241
Query: 304 VSGNLSFLNWLTMVPSLACFDDATL 328
++GN +F N +T+V + A DD L
Sbjct: 242 ITGNYNFFNLMTLVLTTALLDDQHL 266
Score = 100 bits (250), Expect = 3e-21
Identities = 57/156 (36%), Positives = 85/156 (54%), Gaps = 17/156 (10%)
Query: 400 LHIVNTYGAFGSITK--ERAEVILQGTASSNASAPDAMWEDYEFKCKPGDPSRRPCLISP 457
L + N+YG F +T R EV+L+G+ + W + EF KPG+ SR P ++ P
Sbjct: 421 LQLANSYGLFRRMTGLGGRPEVVLEGSYDGHH------WTEIEFMYKPGNLSRPPPVVVP 474
Query: 458 YHYRLDWLMWFAAFQTYEHNDWIIHLAGKLLASDAEALSL----LAHNPFAGRPPPRWVR 513
+ RLDW MWFAA + H+ W L +LL + L +A PF + PP +VR
Sbjct: 475 HQPRLDWQMWFAALGPHTHSPWFTSLVLRLLQGKEPVIRLVQSQVARYPF-HKQPPTYVR 533
Query: 514 GEHYRYKFSRPGGRHAAEGKWWVRKRIGAYFPPLSL 549
+ Y+Y FS+PG +G+WW R+ + +FP +SL
Sbjct: 534 AQRYKYWFSQPG----EQGQWWRRQWVEEFFPSVSL 565
>gi|52693931 olfactory receptor, family 4, subfamily F, member 6
[Homo sapiens]
Length = 312
Score = 32.0 bits (71), Expect = 1.6
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 271 HFIELLVP----FFLFLGRRACIIHGVLQILFQAVLIVSGNLSFLNWLTMVP---SLACF 323
H++ ++ P FL + IIH V+Q+ F L+ G ++ +P LAC
Sbjct: 131 HYLTIMNPQRCILFLVISWIIGIIHSVIQLAFVVDLLFCGPNELDSFFCDLPRFIKLACI 190
Query: 324 DDATLGFLFPSGPG 337
+ TLGF+ + G
Sbjct: 191 ETYTLGFMVTANSG 204
>gi|169171347 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1128
Score = 31.6 bits (70), Expect = 2.0
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 7/42 (16%)
Query: 7 TMAAPAESLRRRKTGYSDPEPESPPAP-------GRGPAGSP 41
T PA R + G S+ PESPP P RGP+ SP
Sbjct: 250 TRPLPARGRREPEAGESEARPESPPQPQPRRRLARRGPSASP 291
>gi|239756380 PREDICTED: hypothetical protein [Homo sapiens]
Length = 151
Score = 30.0 bits (66), Expect = 5.9
Identities = 23/55 (41%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 5 SPTMAAPAESLRRRKTGYSDPEPESPPA--PGRG-PAGSPAHLHTGTFWLTRIVL 56
+P A PA S P PPA PGRG P G P LHT T TR L
Sbjct: 84 APLGAEPALSSGAVPRARRPPRRPHPPARLPGRGTPFGPPRDLHTHTLARTRAPL 138
>gi|239750901 PREDICTED: hypothetical protein XP_002347602 [Homo
sapiens]
Length = 151
Score = 30.0 bits (66), Expect = 5.9
Identities = 23/55 (41%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 5 SPTMAAPAESLRRRKTGYSDPEPESPPA--PGRG-PAGSPAHLHTGTFWLTRIVL 56
+P A PA S P PPA PGRG P G P LHT T TR L
Sbjct: 84 APLGAEPALSSGAVPRARRPPRRPHPPARLPGRGTPFGPPRDLHTHTLARTRAPL 138
>gi|239745293 PREDICTED: hypothetical protein XP_002343426 [Homo
sapiens]
Length = 151
Score = 30.0 bits (66), Expect = 5.9
Identities = 23/55 (41%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 5 SPTMAAPAESLRRRKTGYSDPEPESPPA--PGRG-PAGSPAHLHTGTFWLTRIVL 56
+P A PA S P PPA PGRG P G P LHT T TR L
Sbjct: 84 APLGAEPALSSGAVPRARRPPRRPHPPARLPGRGTPFGPPRDLHTHTLARTRAPL 138
>gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2790
Score = 29.6 bits (65), Expect = 7.7
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 13/53 (24%)
Query: 2 RPDSPTMAAPAESLRRRKTGYSDPEPESPPAPGRGPAGSPAHLHTGTFWLTRI 54
+P PT AP P+P PAPG G AG L TG+ ++ +
Sbjct: 2624 QPPEPTATAP-------------PKPPELPAPGEGEAGEVDELLTGSTGISTV 2663
>gi|239755579 PREDICTED: hypothetical protein [Homo sapiens]
Length = 208
Score = 29.6 bits (65), Expect = 7.7
Identities = 29/114 (25%), Positives = 41/114 (35%), Gaps = 20/114 (17%)
Query: 365 RAANVSLGVLLAWLSVPVVLNLLSSRQVMNTHFNSL-HIVNTYGAFGSITKERAEVILQG 423
+ ++S + WL+ P +LN L SL N I + A V
Sbjct: 79 KGTDISSSTVQGWLTWPEMLNSLVPE------LRSLPKPANQVPPRRQIVGDTATVSTLA 132
Query: 424 TASSNASAPDAMWEDYEF-----------KCKPGDPS--RRPCLISPYHYRLDW 464
T + P WE+ + +C PG + R P LISPYH W
Sbjct: 133 TVVGQPNTPSGKWEENWWLLGGGASFLAGRCVPGSCTHGRAPALISPYHSYPCW 186
>gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2706
Score = 29.6 bits (65), Expect = 7.7
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 13/53 (24%)
Query: 2 RPDSPTMAAPAESLRRRKTGYSDPEPESPPAPGRGPAGSPAHLHTGTFWLTRI 54
+P PT AP P+P PAPG G AG L TG+ ++ +
Sbjct: 2540 QPPEPTATAP-------------PKPPELPAPGEGEAGEVDELLTGSTGISTV 2579
>gi|239750107 PREDICTED: hypothetical protein XP_002347294 [Homo
sapiens]
Length = 208
Score = 29.6 bits (65), Expect = 7.7
Identities = 29/114 (25%), Positives = 41/114 (35%), Gaps = 20/114 (17%)
Query: 365 RAANVSLGVLLAWLSVPVVLNLLSSRQVMNTHFNSL-HIVNTYGAFGSITKERAEVILQG 423
+ ++S + WL+ P +LN L SL N I + A V
Sbjct: 79 KGTDISSSTVQGWLTWPEMLNSLVPE------LRSLPKPANQVPPRRQIVGDTATVSTLA 132
Query: 424 TASSNASAPDAMWEDYEF-----------KCKPGDPS--RRPCLISPYHYRLDW 464
T + P WE+ + +C PG + R P LISPYH W
Sbjct: 133 TVVGQPNTPSGKWEENWWLLGGGASFLAGRCVPGSCTHGRAPALISPYHSYPCW 186
>gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2706
Score = 29.6 bits (65), Expect = 7.7
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 13/53 (24%)
Query: 2 RPDSPTMAAPAESLRRRKTGYSDPEPESPPAPGRGPAGSPAHLHTGTFWLTRI 54
+P PT AP P+P PAPG G AG L TG+ ++ +
Sbjct: 2540 QPPEPTATAP-------------PKPPELPAPGEGEAGEVDELLTGSTGISTV 2579
>gi|239744411 PREDICTED: hypothetical protein XP_002343156 [Homo
sapiens]
Length = 208
Score = 29.6 bits (65), Expect = 7.7
Identities = 29/114 (25%), Positives = 41/114 (35%), Gaps = 20/114 (17%)
Query: 365 RAANVSLGVLLAWLSVPVVLNLLSSRQVMNTHFNSL-HIVNTYGAFGSITKERAEVILQG 423
+ ++S + WL+ P +LN L SL N I + A V
Sbjct: 79 KGTDISSSTVQGWLTWPEMLNSLVPE------LRSLPKPANQVPPRRQIVGDTATVSTLA 132
Query: 424 TASSNASAPDAMWEDYEF-----------KCKPGDPS--RRPCLISPYHYRLDW 464
T + P WE+ + +C PG + R P LISPYH W
Sbjct: 133 TVVGQPNTPSGKWEENWWLLGGGASFLAGRCVPGSCTHGRAPALISPYHSYPCW 186
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.327 0.142 0.480
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,088,168
Number of Sequences: 37866
Number of extensions: 1218382
Number of successful extensions: 5730
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 5706
Number of HSP's gapped (non-prelim): 29
length of query: 567
length of database: 18,247,518
effective HSP length: 108
effective length of query: 459
effective length of database: 14,157,990
effective search space: 6498517410
effective search space used: 6498517410
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.