Search of human proteins with 222144307

Search of human proteins with 222144307

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|222144307 vitelline membrane outer layer 1 isoform 4 [Homo
sapiens]
         (70 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|222144307 vitelline membrane outer layer 1 isoform 4 [Homo sa...   152   7e-38
gi|222144305 vitelline membrane outer layer 1 isoform 3 [Homo sa...   142   4e-35
gi|222144303 vitelline membrane outer layer 1 isoform 2 [Homo sa...   142   4e-35
gi|32698964 vitelline membrane outer layer 1 isoform 1 [Homo sap...   142   4e-35
gi|239746185 PREDICTED: hypothetical protein XP_002343659 [Homo ...    27   3.5  
gi|4506875 selectin L precursor [Homo sapiens]                         27   4.5  

>gi|222144307 vitelline membrane outer layer 1 isoform 4 [Homo
          sapiens]
          Length = 70

 Score =  152 bits (383), Expect = 7e-38
 Identities = 70/70 (100%), Positives = 70/70 (100%)

Query: 1  MERGAGAKLLPLLLLLRATGFTCAQTDGRNGYTAVIEVTSGGPWGDWAWPEMCPDGFFAS 60
          MERGAGAKLLPLLLLLRATGFTCAQTDGRNGYTAVIEVTSGGPWGDWAWPEMCPDGFFAS
Sbjct: 1  MERGAGAKLLPLLLLLRATGFTCAQTDGRNGYTAVIEVTSGGPWGDWAWPEMCPDGFFAS 60

Query: 61 GFSLKLGRME 70
          GFSLKLGRME
Sbjct: 61 GFSLKLGRME 70


>gi|222144305 vitelline membrane outer layer 1 isoform 3 [Homo
          sapiens]
          Length = 102

 Score =  142 bits (359), Expect = 4e-35
 Identities = 65/66 (98%), Positives = 66/66 (100%)

Query: 1  MERGAGAKLLPLLLLLRATGFTCAQTDGRNGYTAVIEVTSGGPWGDWAWPEMCPDGFFAS 60
          MERGAGAKLLPLLLLLRATGFTCAQTDGRNGYTAVIEVTSGGPWGDWAWPEMCPDGFFAS
Sbjct: 1  MERGAGAKLLPLLLLLRATGFTCAQTDGRNGYTAVIEVTSGGPWGDWAWPEMCPDGFFAS 60

Query: 61 GFSLKL 66
          GFSLK+
Sbjct: 61 GFSLKV 66


>gi|222144303 vitelline membrane outer layer 1 isoform 2 [Homo
          sapiens]
          Length = 114

 Score =  142 bits (359), Expect = 4e-35
 Identities = 65/66 (98%), Positives = 66/66 (100%)

Query: 1  MERGAGAKLLPLLLLLRATGFTCAQTDGRNGYTAVIEVTSGGPWGDWAWPEMCPDGFFAS 60
          MERGAGAKLLPLLLLLRATGFTCAQTDGRNGYTAVIEVTSGGPWGDWAWPEMCPDGFFAS
Sbjct: 1  MERGAGAKLLPLLLLLRATGFTCAQTDGRNGYTAVIEVTSGGPWGDWAWPEMCPDGFFAS 60

Query: 61 GFSLKL 66
          GFSLK+
Sbjct: 61 GFSLKV 66


>gi|32698964 vitelline membrane outer layer 1 isoform 1 [Homo
          sapiens]
          Length = 202

 Score =  142 bits (359), Expect = 4e-35
 Identities = 65/66 (98%), Positives = 66/66 (100%)

Query: 1  MERGAGAKLLPLLLLLRATGFTCAQTDGRNGYTAVIEVTSGGPWGDWAWPEMCPDGFFAS 60
          MERGAGAKLLPLLLLLRATGFTCAQTDGRNGYTAVIEVTSGGPWGDWAWPEMCPDGFFAS
Sbjct: 1  MERGAGAKLLPLLLLLRATGFTCAQTDGRNGYTAVIEVTSGGPWGDWAWPEMCPDGFFAS 60

Query: 61 GFSLKL 66
          GFSLK+
Sbjct: 61 GFSLKV 66



 Score = 32.3 bits (72), Expect = 0.082
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 31  GYTAVIEVTSGGPWGDWAWPEMCPDGFFASGFSLKL 66
           G T V+E  SG  WG+W+ P  C  G +   FSL++
Sbjct: 93  GNTHVVESQSGS-WGEWSEPLWCRGGAYLVAFSLRV 127


>gi|239746185 PREDICTED: hypothetical protein XP_002343659 [Homo
           sapiens]
          Length = 977

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 17  RATGFTCAQTDGRNGYTAVIEVTSGGPWGDWAWPEMCPD 55
           R++  +C Q    +GY A +  T   P  + +WPE  PD
Sbjct: 602 RSSCTSCRQCSWYSGYLARLYRTQERPLAEVSWPEGQPD 640


>gi|4506875 selectin L precursor [Homo sapiens]
          Length = 372

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 4/31 (12%)

Query: 21  FTCAQTDGRNGYTAVIEVTSGGPWGDWAWPE 51
           F+C++     G    IE T+ GP+G+W+ PE
Sbjct: 225 FSCSEGTNLTG----IEETTCGPFGNWSSPE 251


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.141    0.474 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,868,618
Number of Sequences: 37866
Number of extensions: 109100
Number of successful extensions: 209
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 203
Number of HSP's gapped (non-prelim): 7
length of query: 70
length of database: 18,247,518
effective HSP length: 43
effective length of query: 27
effective length of database: 16,619,280
effective search space: 448720560
effective search space used: 448720560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.