Search of human proteins with 222136647

Search of human proteins with 222136647

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|222136647 F-box protein 47 [Homo sapiens]
         (452 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|222136647 F-box protein 47 [Homo sapiens]                          914   0.0  
gi|16306588 F-box and leucine-rich repeat protein 4 [Homo sapiens]     35   0.14 
gi|59710104 plexin A3 [Homo sapiens]                                   30   4.5  
gi|124244083 F-box protein 10 [Homo sapiens]                           30   5.9  
gi|33563374 carboxylesterase 3 [Homo sapiens]                          29   7.7  
gi|22208964 ankyrin repeat and SOCS box-containing protein 4 iso...    29   10.0 

>gi|222136647 F-box protein 47 [Homo sapiens]
          Length = 452

 Score =  914 bits (2362), Expect = 0.0
 Identities = 452/452 (100%), Positives = 452/452 (100%)

Query: 1   MASRINTNFTLIPNQKLRRSNRQTSCYSKTLGSGFQPISTFGNFKALPLEIFQIILKYLS 60
           MASRINTNFTLIPNQKLRRSNRQTSCYSKTLGSGFQPISTFGNFKALPLEIFQIILKYLS
Sbjct: 1   MASRINTNFTLIPNQKLRRSNRQTSCYSKTLGSGFQPISTFGNFKALPLEIFQIILKYLS 60

Query: 61  VKDISMLSMVSKTVSQHIINYISTSSGSKRLLLQDFHNLELPDRRQDSAILEHYRSLGLL 120
           VKDISMLSMVSKTVSQHIINYISTSSGSKRLLLQDFHNLELPDRRQDSAILEHYRSLGLL
Sbjct: 61  VKDISMLSMVSKTVSQHIINYISTSSGSKRLLLQDFHNLELPDRRQDSAILEHYRSLGLL 120

Query: 121 FKRCTLLLPTKERLKYIHKILTEVSCFKFNGCAAPMQCLGLTCYGMFLQTLTAGWDELEC 180
           FKRCTLLLPTKERLKYIHKILTEVSCFKFNGCAAPMQCLGLTCYGMFLQTLTAGWDELEC
Sbjct: 121 FKRCTLLLPTKERLKYIHKILTEVSCFKFNGCAAPMQCLGLTCYGMFLQTLTAGWDELEC 180

Query: 181 HRVYNFLCELTNLCRKIQMAVCSKPGSAQKLELRIRLFCRNVLLDHWTHRSDSAFWLTRI 240
           HRVYNFLCELTNLCRKIQMAVCSKPGSAQKLELRIRLFCRNVLLDHWTHRSDSAFWLTRI
Sbjct: 181 HRVYNFLCELTNLCRKIQMAVCSKPGSAQKLELRIRLFCRNVLLDHWTHRSDSAFWLTRI 240

Query: 241 LKPWPMVNQARLLYIIFGPISPQDGQVVWQEMIEEPTDEFSLKGLADAIKLLYDASTKEW 300
           LKPWPMVNQARLLYIIFGPISPQDGQVVWQEMIEEPTDEFSLKGLADAIKLLYDASTKEW
Sbjct: 241 LKPWPMVNQARLLYIIFGPISPQDGQVVWQEMIEEPTDEFSLKGLADAIKLLYDASTKEW 300

Query: 301 TADDVISLVDELSVVPREWLLENNARLLMLSGNNICFSFMASKAVNGRTIELARLVVFLA 360
           TADDVISLVDELSVVPREWLLENNARLLMLSGNNICFSFMASKAVNGRTIELARLVVFLA
Sbjct: 301 TADDVISLVDELSVVPREWLLENNARLLMLSGNNICFSFMASKAVNGRTIELARLVVFLA 360

Query: 361 LVCEKELYCMDWTVKMMQKVCKVFSTPVERKNFLQNVANAFACVIMEMLQSIMSGDRDED 420
           LVCEKELYCMDWTVKMMQKVCKVFSTPVERKNFLQNVANAFACVIMEMLQSIMSGDRDED
Sbjct: 361 LVCEKELYCMDWTVKMMQKVCKVFSTPVERKNFLQNVANAFACVIMEMLQSIMSGDRDED 420

Query: 421 DRSFLNLFHLVHAQANFHKEVLYLTMNTPLST 452
           DRSFLNLFHLVHAQANFHKEVLYLTMNTPLST
Sbjct: 421 DRSFLNLFHLVHAQANFHKEVLYLTMNTPLST 452


>gi|16306588 F-box and leucine-rich repeat protein 4 [Homo sapiens]
          Length = 621

 Score = 35.0 bits (79), Expect = 0.14
 Identities = 15/36 (41%), Positives = 23/36 (63%)

Query: 42  GNFKALPLEIFQIILKYLSVKDISMLSMVSKTVSQH 77
           G F  LP E+ Q+IL +L++ D+  L+   K +SQH
Sbjct: 278 GYFDKLPYELIQLILNHLTLPDLCRLAQTCKLLSQH 313


>gi|59710104 plexin A3 [Homo sapiens]
          Length = 1871

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 39/140 (27%), Positives = 56/140 (40%), Gaps = 32/140 (22%)

Query: 37  PISTFGNFKAL----PLEIFQII--LKYLSVKDISMLSMVSKTVSQHIINYISTSSGSKR 90
           P+   GNF  L    PL    +I  L  L+     M S+ + T  QH + +I T SGS +
Sbjct: 379 PMQINGNFCGLVLNQPLGGLHVIEGLPLLADSTDGMASVAAYTYRQHSVVFIGTRSGSLK 438

Query: 91  LL----LQDFHNLELPDRRQDSAILE------HYRSLGLLFKRCTLLLPTKERLKYIHKI 140
            +     QD H  E       S IL        +R + LL ++    LP +         
Sbjct: 439 KVRVDGFQDAHLYETVPVVDGSPILRDLLFSPDHRHIYLLSEKQVSQLPVE--------- 489

Query: 141 LTEVSCFKFNGCAAPMQCLG 160
               +C ++  CAA   CLG
Sbjct: 490 ----TCEQYQSCAA---CLG 502


>gi|124244083 F-box protein 10 [Homo sapiens]
          Length = 956

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 14/38 (36%), Positives = 25/38 (65%)

Query: 47 LPLEIFQIILKYLSVKDISMLSMVSKTVSQHIINYIST 84
          LPLE++++IL YL + D+   S+V +   + I++  ST
Sbjct: 6  LPLELWRMILAYLHLPDLGRCSLVCRAWYELILSLDST 43


>gi|33563374 carboxylesterase 3 [Homo sapiens]
          Length = 571

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 223 LLDHWTHRSDSAFWLTRILKPWPMVNQARLLYIIFGPISPQDGQ 266
           ++  WTH + +    ++ L PWP  NQA   Y+   P+ P+ GQ
Sbjct: 496 MMAQWTHFARTGDPNSKALPPWPQFNQAE-QYLEINPV-PRAGQ 537


>gi|22208964 ankyrin repeat and SOCS box-containing protein 4
           isoform b [Homo sapiens]
          Length = 349

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 12/72 (16%)

Query: 143 EVSCFKFNGCAAPMQCLGLT----------CYGMFLQTLTAGWDELECHRVYNFLCELTN 192
           E +    NGCAA    L +T          CY + L    A     + H+V   LC + +
Sbjct: 277 EANLMDINGCAAIQYVLKVTSVRPAAQPEICYQLLLNHGAARIYPPQFHKVR--LCPVVS 334

Query: 193 LCRKIQMAVCSK 204
             RKIQMA  S+
Sbjct: 335 RLRKIQMAALSE 346


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.137    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,951,869
Number of Sequences: 37866
Number of extensions: 666232
Number of successful extensions: 1807
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1804
Number of HSP's gapped (non-prelim): 6
length of query: 452
length of database: 18,247,518
effective HSP length: 106
effective length of query: 346
effective length of database: 14,233,722
effective search space: 4924867812
effective search space used: 4924867812
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.