Search of human proteins with 221139888

Search of human proteins with 221139888

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|221139888 transmembrane protein 30A isoform 2 [Homo sapiens]
         (325 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|221139888 transmembrane protein 30A isoform 2 [Homo sapiens]       676   0.0  
gi|8922720 transmembrane protein 30A isoform 1 [Homo sapiens]         657   0.0  
gi|63003930 transmembrane protein 30B [Homo sapiens]                  325   3e-89
gi|239753641 PREDICTED: transmembrane protein 30C [Homo sapiens]       41   0.001
gi|239748184 PREDICTED: transmembrane protein 30C [Homo sapiens]       41   0.001
gi|239742078 PREDICTED: transmembrane protein 30C [Homo sapiens]       41   0.001
gi|40255149 Rho guanine nucleotide exchange factor (GEF) 19 [Hom...    29   6.5  
gi|116268093 taste receptor, type 2, member 41 [Homo sapiens]          28   8.5  

>gi|221139888 transmembrane protein 30A isoform 2 [Homo sapiens]
          Length = 325

 Score =  676 bits (1743), Expect = 0.0
 Identities = 325/325 (100%), Positives = 325/325 (100%)

Query: 1   MAMNYNAKDEVDGGPPCAPGGTAKTRRPDNTAFKQQRLPAWQPILTAGTVLPIFFIIGLI 60
           MAMNYNAKDEVDGGPPCAPGGTAKTRRPDNTAFKQQRLPAWQPILTAGTVLPIFFIIGLI
Sbjct: 1   MAMNYNAKDEVDGGPPCAPGGTAKTRRPDNTAFKQQRLPAWQPILTAGTVLPIFFIIGLI 60

Query: 61  FIPIGIGIFVTSNNIREIEGNVFMYYGLSNFYQNHRRYVKSRDDSQLNGDSSALLNPSKE 120
           FIPIGIGIFVTSNNIREIEGNVFMYYGLSNFYQNHRRYVKSRDDSQLNGDSSALLNPSKE
Sbjct: 61  FIPIGIGIFVTSNNIREIEGNVFMYYGLSNFYQNHRRYVKSRDDSQLNGDSSALLNPSKE 120

Query: 121 CEPYRRNEDKPIAPCGAIANSMFNDTLELFLIGNDSYPIPIALKKKGIAWWTDKNVKFRN 180
           CEPYRRNEDKPIAPCGAIANSMFNDTLELFLIGNDSYPIPIALKKKGIAWWTDKNVKFRN
Sbjct: 121 CEPYRRNEDKPIAPCGAIANSMFNDTLELFLIGNDSYPIPIALKKKGIAWWTDKNVKFRN 180

Query: 181 PPGGDNLEERFKGTTKPVNWLKPVYMLDSDPDNNGFINEDFIVWMRTAALPTFRKLYRLI 240
           PPGGDNLEERFKGTTKPVNWLKPVYMLDSDPDNNGFINEDFIVWMRTAALPTFRKLYRLI
Sbjct: 181 PPGGDNLEERFKGTTKPVNWLKPVYMLDSDPDNNGFINEDFIVWMRTAALPTFRKLYRLI 240

Query: 241 ERKSDLHPTLPAGRYSLNVTYNYPVHYFDGRKRMILSTISWMGGKNPFLGIAYIAVGSIS 300
           ERKSDLHPTLPAGRYSLNVTYNYPVHYFDGRKRMILSTISWMGGKNPFLGIAYIAVGSIS
Sbjct: 241 ERKSDLHPTLPAGRYSLNVTYNYPVHYFDGRKRMILSTISWMGGKNPFLGIAYIAVGSIS 300

Query: 301 FLLGVVLLVINHKYRNSSNTADITI 325
           FLLGVVLLVINHKYRNSSNTADITI
Sbjct: 301 FLLGVVLLVINHKYRNSSNTADITI 325


>gi|8922720 transmembrane protein 30A isoform 1 [Homo sapiens]
          Length = 361

 Score =  657 bits (1696), Expect = 0.0
 Identities = 325/361 (90%), Positives = 325/361 (90%), Gaps = 36/361 (9%)

Query: 1   MAMNYNAKDEVDGGPPCAPGGTAKTRRPDNTAFKQQRLPAWQPILTAGTVLPIFFIIGLI 60
           MAMNYNAKDEVDGGPPCAPGGTAKTRRPDNTAFKQQRLPAWQPILTAGTVLPIFFIIGLI
Sbjct: 1   MAMNYNAKDEVDGGPPCAPGGTAKTRRPDNTAFKQQRLPAWQPILTAGTVLPIFFIIGLI 60

Query: 61  FIPIGIGIFVTSNNIREIE------------------------------------GNVFM 84
           FIPIGIGIFVTSNNIREIE                                    GNVFM
Sbjct: 61  FIPIGIGIFVTSNNIREIEIDYTGTEPSSPCNKCLSPDVTPCFCTINFTLEKSFEGNVFM 120

Query: 85  YYGLSNFYQNHRRYVKSRDDSQLNGDSSALLNPSKECEPYRRNEDKPIAPCGAIANSMFN 144
           YYGLSNFYQNHRRYVKSRDDSQLNGDSSALLNPSKECEPYRRNEDKPIAPCGAIANSMFN
Sbjct: 121 YYGLSNFYQNHRRYVKSRDDSQLNGDSSALLNPSKECEPYRRNEDKPIAPCGAIANSMFN 180

Query: 145 DTLELFLIGNDSYPIPIALKKKGIAWWTDKNVKFRNPPGGDNLEERFKGTTKPVNWLKPV 204
           DTLELFLIGNDSYPIPIALKKKGIAWWTDKNVKFRNPPGGDNLEERFKGTTKPVNWLKPV
Sbjct: 181 DTLELFLIGNDSYPIPIALKKKGIAWWTDKNVKFRNPPGGDNLEERFKGTTKPVNWLKPV 240

Query: 205 YMLDSDPDNNGFINEDFIVWMRTAALPTFRKLYRLIERKSDLHPTLPAGRYSLNVTYNYP 264
           YMLDSDPDNNGFINEDFIVWMRTAALPTFRKLYRLIERKSDLHPTLPAGRYSLNVTYNYP
Sbjct: 241 YMLDSDPDNNGFINEDFIVWMRTAALPTFRKLYRLIERKSDLHPTLPAGRYSLNVTYNYP 300

Query: 265 VHYFDGRKRMILSTISWMGGKNPFLGIAYIAVGSISFLLGVVLLVINHKYRNSSNTADIT 324
           VHYFDGRKRMILSTISWMGGKNPFLGIAYIAVGSISFLLGVVLLVINHKYRNSSNTADIT
Sbjct: 301 VHYFDGRKRMILSTISWMGGKNPFLGIAYIAVGSISFLLGVVLLVINHKYRNSSNTADIT 360

Query: 325 I 325
           I
Sbjct: 361 I 361


>gi|63003930 transmembrane protein 30B [Homo sapiens]
          Length = 351

 Score =  325 bits (834), Expect = 3e-89
 Identities = 169/337 (50%), Positives = 216/337 (64%), Gaps = 45/337 (13%)

Query: 27  RPDNTAFKQQRLPAWQPILTAGTVLPIFFIIGLIFIPIGIGIFVTSNNIREIE------- 79
           +PDNTAF QQRLPAWQP+L+A   LP+FF  GL FI +G+G++ +SN I+E+E       
Sbjct: 12  QPDNTAFTQQRLPAWQPLLSASIALPLFFCAGLAFIGLGLGLYYSSNGIKELEYDYTGDP 71

Query: 80  ----------------------------------GNVFMYYGLSNFYQNHRRYVKSRDDS 105
                                             G V++YY L+NFYQN+RRY  SRDD+
Sbjct: 72  GTGNCSVCAAAGQGRALPPPCSCAWYFSLPELFQGPVYLYYELTNFYQNNRRYGVSRDDA 131

Query: 106 QLNGDSSALLNPSKECEPYRRNE-DKPIAPCGAIANSMFNDTLELFLIGNDSYP-IPIAL 163
           QL+G  SAL +P  EC PY+R+    PIAPCGAIANS+FND+  L+       P + + L
Sbjct: 132 QLSGLPSALRHPVNECAPYQRSAAGLPIAPCGAIANSLFNDSFSLWHQRQPGGPYVEVPL 191

Query: 164 KKKGIAWWTDKNVKFRNPP-GGDNLEERFKGTTKPVNWLKPVYMLDSDPDNNGFINEDFI 222
            + GIAWWTD +VKFRNPP    +L   F+GT  P NW +PVY L  DP+N GFIN+DF+
Sbjct: 192 DRSGIAWWTDYHVKFRNPPLVNGSLALAFQGTAPPPNWRRPVYELSPDPNNTGFINQDFV 251

Query: 223 VWMRTAALPTFRKLYRLIERKSDLHPTLPAGRYSLNVTYNYPVHYFDGRKRMILSTISWM 282
           VWMRTAALPTFRKLY  I R+ +    LP G Y +N+TYNYPV  F G K +I S+ISWM
Sbjct: 252 VWMRTAALPTFRKLYARI-RQGNYSAGLPRGAYRVNITYNYPVRAFGGHKLLIFSSISWM 310

Query: 283 GGKNPFLGIAYIAVGSISFLLGVVLLVINHKYRNSSN 319
           GGKNPFLGIAY+ VGS+  L G V+LV+  +Y++  +
Sbjct: 311 GGKNPFLGIAYLVVGSLCILTGFVMLVVYIRYQDQDD 347


>gi|239753641 PREDICTED: transmembrane protein 30C [Homo sapiens]
          Length = 113

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 22/57 (38%), Positives = 35/57 (61%)

Query: 25 TRRPDNTAFKQQRLPAWQPILTAGTVLPIFFIIGLIFIPIGIGIFVTSNNIREIEGN 81
          +R  DN+A KQQ LP  +   TA  VL +FF  G+  + +GI + +++ + +EIE N
Sbjct: 10 SRLLDNSALKQQELPIHRLYFTARRVLFVFFATGIFCLCMGIILILSARSTQEIEIN 66


>gi|239748184 PREDICTED: transmembrane protein 30C [Homo sapiens]
          Length = 113

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 22/57 (38%), Positives = 35/57 (61%)

Query: 25 TRRPDNTAFKQQRLPAWQPILTAGTVLPIFFIIGLIFIPIGIGIFVTSNNIREIEGN 81
          +R  DN+A KQQ LP  +   TA  VL +FF  G+  + +GI + +++ + +EIE N
Sbjct: 10 SRLLDNSALKQQELPIHRLYFTARRVLFVFFATGIFCLCMGIILILSARSTQEIEIN 66


>gi|239742078 PREDICTED: transmembrane protein 30C [Homo sapiens]
          Length = 113

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 22/57 (38%), Positives = 35/57 (61%)

Query: 25 TRRPDNTAFKQQRLPAWQPILTAGTVLPIFFIIGLIFIPIGIGIFVTSNNIREIEGN 81
          +R  DN+A KQQ LP  +   TA  VL +FF  G+  + +GI + +++ + +EIE N
Sbjct: 10 SRLLDNSALKQQELPIHRLYFTARRVLFVFFATGIFCLCMGIILILSARSTQEIEIN 66


>gi|40255149 Rho guanine nucleotide exchange factor (GEF) 19 [Homo
           sapiens]
          Length = 802

 Score = 28.9 bits (63), Expect = 6.5
 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 2/80 (2%)

Query: 72  SNNIREIEGNVFMYYGLSNFYQNHRRYVKSRDDSQLNGDSSALL--NPSKECEPYRRNED 129
           S  ++ I G+VF+   L   +  H+  +++R +S+     SAL   +P ++ E     ED
Sbjct: 657 SLKLQGIPGHVFLLQLLHGQHMKHQFLLRARTESEKQRWISALCPSSPQEDKEVISEGED 716

Query: 130 KPIAPCGAIANSMFNDTLEL 149
            P   C     ++  D L L
Sbjct: 717 CPQVQCVRTYKALHPDELTL 736


>gi|116268093 taste receptor, type 2, member 41 [Homo sapiens]
          Length = 307

 Score = 28.5 bits (62), Expect = 8.5
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)

Query: 37  RLPAWQPILTAGTVLPIFFIIGLIFIPIGIGIFVTSNNIREIEGNV 82
           R P W P L  G+VL I FII L+F  +   ++     IR+  GN+
Sbjct: 125 RFPGWVPWLLLGSVL-ISFIITLLFFWVNYPVY-QEFLIRKFSGNM 168


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.140    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,576,843
Number of Sequences: 37866
Number of extensions: 642441
Number of successful extensions: 1282
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1270
Number of HSP's gapped (non-prelim): 10
length of query: 325
length of database: 18,247,518
effective HSP length: 102
effective length of query: 223
effective length of database: 14,385,186
effective search space: 3207896478
effective search space used: 3207896478
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.