Search of human proteins with 218505674

Search of human proteins with 218505674

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|218505674 exoribonuclease 2 isoform 2 [Homo sapiens]
         (328 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|218505674 exoribonuclease 2 isoform 2 [Homo sapiens]               678   0.0  
gi|218505680 exoribonuclease 2 isoform 1 [Homo sapiens]               502   e-142
gi|31543184 three prime histone mRNA exonuclease 1 [Homo sapiens]     141   9e-34
gi|74136559 prion protein interacting protein [Homo sapiens]          124   1e-28
gi|4507813 UDP-glucose dehydrogenase [Homo sapiens]                    30   3.8  
gi|38570109 CAP-binding protein complex interacting protein 1 is...    30   3.8  
gi|38570107 CAP-binding protein complex interacting protein 1 is...    30   3.8  

>gi|218505674 exoribonuclease 2 isoform 2 [Homo sapiens]
          Length = 328

 Score =  678 bits (1750), Expect = 0.0
 Identities = 328/328 (100%), Positives = 328/328 (100%)

Query: 1   MATKRLARQLGLIRRKSIAPANGNLGRSKSKQLFDYLIVIDFESTCWNDGKHHHSQEIIE 60
           MATKRLARQLGLIRRKSIAPANGNLGRSKSKQLFDYLIVIDFESTCWNDGKHHHSQEIIE
Sbjct: 1   MATKRLARQLGLIRRKSIAPANGNLGRSKSKQLFDYLIVIDFESTCWNDGKHHHSQEIIE 60

Query: 61  FPAVLLNTSTGQIDSEFQAYVQPQEHPILSEFCMELTGIKQAQVDEGVPLKICLSQFCKW 120
           FPAVLLNTSTGQIDSEFQAYVQPQEHPILSEFCMELTGIKQAQVDEGVPLKICLSQFCKW
Sbjct: 61  FPAVLLNTSTGQIDSEFQAYVQPQEHPILSEFCMELTGIKQAQVDEGVPLKICLSQFCKW 120

Query: 121 IHKIQQQKNIIFATGISEPSASEVKLCAFVTWSDWDLGVCLEYECKRKQLLKPVFLNSWI 180
           IHKIQQQKNIIFATGISEPSASEVKLCAFVTWSDWDLGVCLEYECKRKQLLKPVFLNSWI
Sbjct: 121 IHKIQQQKNIIFATGISEPSASEVKLCAFVTWSDWDLGVCLEYECKRKQLLKPVFLNSWI 180

Query: 181 DLRATYKLFYRRKPKGLSGALQEVGIEFSGREHSGLDDSRNTALLAWKMIRDGCVMKITR 240
           DLRATYKLFYRRKPKGLSGALQEVGIEFSGREHSGLDDSRNTALLAWKMIRDGCVMKITR
Sbjct: 181 DLRATYKLFYRRKPKGLSGALQEVGIEFSGREHSGLDDSRNTALLAWKMIRDGCVMKITR 240

Query: 241 SLNKGPFLLPSWTWNSDLASGDQHAFLQQEFGCGTYRTLLQKPNMSKQEKGNILWLTMVW 300
           SLNKGPFLLPSWTWNSDLASGDQHAFLQQEFGCGTYRTLLQKPNMSKQEKGNILWLTMVW
Sbjct: 241 SLNKGPFLLPSWTWNSDLASGDQHAFLQQEFGCGTYRTLLQKPNMSKQEKGNILWLTMVW 300

Query: 301 LSLACLQRKNYNDCMLNTASQTVTTEKF 328
           LSLACLQRKNYNDCMLNTASQTVTTEKF
Sbjct: 301 LSLACLQRKNYNDCMLNTASQTVTTEKF 328


>gi|218505680 exoribonuclease 2 isoform 1 [Homo sapiens]
          Length = 691

 Score =  502 bits (1292), Expect = e-142
 Identities = 245/246 (99%), Positives = 245/246 (99%)

Query: 1   MATKRLARQLGLIRRKSIAPANGNLGRSKSKQLFDYLIVIDFESTCWNDGKHHHSQEIIE 60
           MATKRLARQLGLIRRKSIAPANGNLGRSKSKQLFDYLIVIDFESTCWNDGKHHHSQEIIE
Sbjct: 1   MATKRLARQLGLIRRKSIAPANGNLGRSKSKQLFDYLIVIDFESTCWNDGKHHHSQEIIE 60

Query: 61  FPAVLLNTSTGQIDSEFQAYVQPQEHPILSEFCMELTGIKQAQVDEGVPLKICLSQFCKW 120
           FPAVLLNTSTGQIDSEFQAYVQPQEHPILSEFCMELTGIKQAQVDEGVPLKICLSQFCKW
Sbjct: 61  FPAVLLNTSTGQIDSEFQAYVQPQEHPILSEFCMELTGIKQAQVDEGVPLKICLSQFCKW 120

Query: 121 IHKIQQQKNIIFATGISEPSASEVKLCAFVTWSDWDLGVCLEYECKRKQLLKPVFLNSWI 180
           IHKIQQQKNIIFATGISEPSASEVKLCAFVTWSDWDLGVCLEYECKRKQLLKPVFLNSWI
Sbjct: 121 IHKIQQQKNIIFATGISEPSASEVKLCAFVTWSDWDLGVCLEYECKRKQLLKPVFLNSWI 180

Query: 181 DLRATYKLFYRRKPKGLSGALQEVGIEFSGREHSGLDDSRNTALLAWKMIRDGCVMKITR 240
           DLRATYKLFYRRKPKGLSGALQEVGIEFSGREHSGLDDSRNTALLAWKMIRDGCVMKITR
Sbjct: 181 DLRATYKLFYRRKPKGLSGALQEVGIEFSGREHSGLDDSRNTALLAWKMIRDGCVMKITR 240

Query: 241 SLNKGP 246
           SLNK P
Sbjct: 241 SLNKVP 246


>gi|31543184 three prime histone mRNA exonuclease 1 [Homo sapiens]
          Length = 349

 Score =  141 bits (355), Expect = 9e-34
 Identities = 77/217 (35%), Positives = 122/217 (56%), Gaps = 17/217 (7%)

Query: 34  FDYLIVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIDSEFQAYVQPQEHPILSEFC 93
           +DY+ +IDFE+TC          EIIEFP VLLNT T +I+  FQ YV+P+ +  LS+FC
Sbjct: 127 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFC 186

Query: 94  MELTGIKQAQVDEGVPLKICLSQFCKWIHKIQQQKNIIFATGISEPSASEVKLCAFVTWS 153
           + LTGI Q QVD        L +   W+ K+++               ++ K  + +T  
Sbjct: 187 ISLTGITQDQVDRADTFPQVLKKVIDWM-KLKE-------------LGTKYKY-SLLTDG 231

Query: 154 DWDLGVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYR--RKPKGLSGALQEVGIEFSGR 211
            WD+   L  +C+  +L  P F   WI++R +Y  FY+  R    L+  L+++G+++ GR
Sbjct: 232 SWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGR 291

Query: 212 EHSGLDDSRNTALLAWKMIRDGCVMKITRSLNKGPFL 248
            H GLDDS+N A +A +M++DGC ++I   ++ G  +
Sbjct: 292 PHCGLDDSKNIARIAVRMLQDGCELRINEKMHAGQLM 328


>gi|74136559 prion protein interacting protein [Homo sapiens]
          Length = 337

 Score =  124 bits (310), Expect = 1e-28
 Identities = 78/209 (37%), Positives = 108/209 (51%), Gaps = 17/209 (8%)

Query: 32  QLFDYLIVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIDSEFQAYVQPQEHPILSE 91
           Q + Y +V+DFE+TC  D    H QEIIEFP + LN  T +I+S F  YVQP  HP L+ 
Sbjct: 141 QRYHYFLVLDFEATC--DKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTP 198

Query: 92  FCMELTGIKQAQVDEGVPLKICLSQFCKWIHKIQQQKNIIFATGISEPSASEVKLCAFVT 151
           FC ELTGI QA VD    L+  L +  +W+ K           G+ +P+   +    FVT
Sbjct: 199 FCTELTGIIQAMVDGQPSLQQVLERVDEWMAK----------EGLLDPNVKSI----FVT 244

Query: 152 WSDWDLGVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYRRKPK-GLSGALQEVGIEFSG 210
             DWDL V L  +C+   L    +   WI+L+  Y       PK GL    + + ++  G
Sbjct: 245 CGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIG 304

Query: 211 REHSGLDDSRNTALLAWKMIRDGCVMKIT 239
           R HSG+DD +N A +   +   G + K T
Sbjct: 305 RPHSGIDDCKNIANIMKTLAYRGFIFKQT 333


>gi|4507813 UDP-glucose dehydrogenase [Homo sapiens]
          Length = 494

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 11/60 (18%)

Query: 148 AFVTWSDWDLGVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYRRKPKGLSGALQEVGIE 207
           A V  ++WD+   L+YE   K++LKP F+              RR   GL   LQ +G +
Sbjct: 410 AVVICTEWDMFKELDYERIHKKMLKPAFIFDG-----------RRVLDGLHNELQTIGFQ 458


>gi|38570109 CAP-binding protein complex interacting protein 1
           isoform b [Homo sapiens]
          Length = 1349

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 3/71 (4%)

Query: 56  QEIIEFPAVLLNTSTGQIDSEFQAYVQPQEH-PILSEFCMELTGIKQAQVDEGVPLKICL 114
           QE++E   + L+T+   +D E   +V+  E   +L +FC +LT  +         L+I L
Sbjct: 912 QEVVESSQLALSTAFSALDKEDTGFVKATEFGQVLKDFCYKLTDNQYHYFLR--KLRIHL 969

Query: 115 SQFCKWIHKIQ 125
           + +  W + +Q
Sbjct: 970 TPYINWKYFLQ 980


>gi|38570107 CAP-binding protein complex interacting protein 1 isoform
            a [Homo sapiens]
          Length = 1501

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 3/71 (4%)

Query: 56   QEIIEFPAVLLNTSTGQIDSEFQAYVQPQEH-PILSEFCMELTGIKQAQVDEGVPLKICL 114
            QE++E   + L+T+   +D E   +V+  E   +L +FC +LT  +         L+I L
Sbjct: 1064 QEVVESSQLALSTAFSALDKEDTGFVKATEFGQVLKDFCYKLTDNQYHYFLR--KLRIHL 1121

Query: 115  SQFCKWIHKIQ 125
            + +  W + +Q
Sbjct: 1122 TPYINWKYFLQ 1132


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.135    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,559,356
Number of Sequences: 37866
Number of extensions: 541559
Number of successful extensions: 972
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 960
Number of HSP's gapped (non-prelim): 10
length of query: 328
length of database: 18,247,518
effective HSP length: 103
effective length of query: 225
effective length of database: 14,347,320
effective search space: 3228147000
effective search space used: 3228147000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.