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Search of human proteins with 21359947
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21359947 popeye protein 3 [Homo sapiens]
(291 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21359947 popeye protein 3 [Homo sapiens] 597 e-171
gi|22209004 popeye protein 2 [Homo sapiens] 299 2e-81
gi|22202606 blood vessel epicardial substance isoform 5 [Homo sa... 149 2e-36
gi|22202608 blood vessel epicardial substance isoform 4 [Homo sa... 149 2e-36
gi|53850572 olfactory receptor, family 2, subfamily A, member 5 ... 32 0.66
gi|50511934 transmembrane 4 superfamily member 17 isoform b [Hom... 28 7.3
gi|54859560 transmembrane 4 superfamily member 17 isoform a [Hom... 28 7.3
gi|54859505 transmembrane 4 superfamily member 17 isoform c [Hom... 28 7.3
gi|4505835 polycystin 2 [Homo sapiens] 28 9.5
gi|95147335 inositol 1,4,5-triphosphate receptor, type 2 [Homo s... 28 9.5
>gi|21359947 popeye protein 3 [Homo sapiens]
Length = 291
Score = 597 bits (1539), Expect = e-171
Identities = 291/291 (100%), Positives = 291/291 (100%)
Query: 1 MERNSSLWKNLIDEHPVCTTWKQEAEGAIYHLASILFVVGFMGGSGFFGLLYVFSLLGLG 60
MERNSSLWKNLIDEHPVCTTWKQEAEGAIYHLASILFVVGFMGGSGFFGLLYVFSLLGLG
Sbjct: 1 MERNSSLWKNLIDEHPVCTTWKQEAEGAIYHLASILFVVGFMGGSGFFGLLYVFSLLGLG 60
Query: 61 FLCSAVWAWVDVCAADIFSWNFVLFVICFMQFVHIAYQVRSITFAREFQVLYSSLFQPLG 120
FLCSAVWAWVDVCAADIFSWNFVLFVICFMQFVHIAYQVRSITFAREFQVLYSSLFQPLG
Sbjct: 61 FLCSAVWAWVDVCAADIFSWNFVLFVICFMQFVHIAYQVRSITFAREFQVLYSSLFQPLG 120
Query: 121 ISLPVFRTIALSSEVVTLEKEHCYAMQGKTSIDKLSLLVSGRIRVTVDGEFLHYIFPLQF 180
ISLPVFRTIALSSEVVTLEKEHCYAMQGKTSIDKLSLLVSGRIRVTVDGEFLHYIFPLQF
Sbjct: 121 ISLPVFRTIALSSEVVTLEKEHCYAMQGKTSIDKLSLLVSGRIRVTVDGEFLHYIFPLQF 180
Query: 181 LDSPEWDSLRPTEEGIFQVTLTAETDCRYVSWRRKKLYLLFAQHRYISRLFSVLIGSDIA 240
LDSPEWDSLRPTEEGIFQVTLTAETDCRYVSWRRKKLYLLFAQHRYISRLFSVLIGSDIA
Sbjct: 181 LDSPEWDSLRPTEEGIFQVTLTAETDCRYVSWRRKKLYLLFAQHRYISRLFSVLIGSDIA 240
Query: 241 DKLYALNDRVYIGKRYHYDIRLPNFYQMSTPEIRRSPLTQHFQNSRRYCDK 291
DKLYALNDRVYIGKRYHYDIRLPNFYQMSTPEIRRSPLTQHFQNSRRYCDK
Sbjct: 241 DKLYALNDRVYIGKRYHYDIRLPNFYQMSTPEIRRSPLTQHFQNSRRYCDK 291
>gi|22209004 popeye protein 2 [Homo sapiens]
Length = 364
Score = 299 bits (766), Expect = 2e-81
Identities = 137/273 (50%), Positives = 188/273 (68%), Gaps = 2/273 (0%)
Query: 1 MERNSSLWKNLIDEHPVCTTWKQEAEGAIYHLASILFVVGFMGGSGFFGLLYVFSLLGLG 60
M NSS L+ + C WKQ+ EGA+YHLA+ L ++GFMGGSG +G Y+F L G
Sbjct: 1 MSANSSRVGQLLLQGSACIRWKQDVEGAVYHLANCLLLLGFMGGSGVYGCFYLFGFLSAG 60
Query: 61 FLCSAVWAWVDVCAADIFSWNFVLFVICFMQFVHIAYQVRSITFAREFQVLYSSLFQPLG 120
+LC +W W C DI W+F+L V+C +Q H+ Y++R T EF +LY +L PL
Sbjct: 61 YLCCVLWGWFSACGLDIVLWSFLLAVVCLLQLAHLVYRLREDTLPEEFDLLYKTLCLPLQ 120
Query: 121 ISLPVFRTIA--LSSEVVTLEKEHCYAMQGKTSIDKLSLLVSGRIRVTVDGEFLHYIFPL 178
+ L ++ I +V+TL E YA++G+T I++LSLL+SGR+RV+ DG+FLHYIFP
Sbjct: 121 VPLQTYKEIVHCCEEQVLTLATEQTYAVEGETPINRLSLLLSGRVRVSQDGQFLHYIFPY 180
Query: 179 QFLDSPEWDSLRPTEEGIFQVTLTAETDCRYVSWRRKKLYLLFAQHRYISRLFSVLIGSD 238
QF+DSPEW+SL+P+EEG+FQVTLTAET C Y+SW RK L+LL + RYIS LFS L+G D
Sbjct: 181 QFMDSPEWESLQPSEEGVFQVTLTAETSCSYISWPRKSLHLLLTKERYISCLFSALLGYD 240
Query: 239 IADKLYALNDRVYIGKRYHYDIRLPNFYQMSTP 271
I++KLY LND+++ +DIRLP+ Y + P
Sbjct: 241 ISEKLYTLNDKLFAKFGLRFDIRLPSLYHVLGP 273
>gi|22202606 blood vessel epicardial substance isoform 5 [Homo
sapiens]
Length = 360
Score = 149 bits (377), Expect = 2e-36
Identities = 87/263 (33%), Positives = 146/263 (55%), Gaps = 5/263 (1%)
Query: 18 CTTWKQEAEGAIYHLASILFVVGFMGGSGF-FGLLYVFSLLGLGFLCSAVWAWVDVCAAD 76
C W+ E ++H+A+I F VG + + ++++ +L LG VWA + CA D
Sbjct: 34 CENWR-EIHHLVFHVANICFAVGLVIPTTLHLHMIFLRGMLTLGCTLYIVWATLYRCALD 92
Query: 77 IFSWNFVLFVICFMQFVHIAYQVRSITFAREFQVLYSSLFQPLGISLPVFRTIALSSEVV 136
I WN V + + ++ Y+ R + +E +Y LF+PL + +FR + ++
Sbjct: 93 IMIWNSVFLGVNILHLSYLLYKKRPVKIEKELSGMYRRLFEPLRVPPDLFRRLTGQFCMI 152
Query: 137 -TLEKEHCYAMQGKTSID-KLSLLVSGRIRVTVDGEFLHYIFPLQFLDSPEWDSLRPTEE 194
TL+K YA + KTS+D +LS+L+ G+++V+ G FLH I+P F+DSPE+ S + +
Sbjct: 153 QTLKKGQTYAAEDKTSVDDRLSILLKGKMKVSYRGHFLHNIYPCAFIDSPEFRSTQMHKG 212
Query: 195 GIFQVTLTAETDCRYVSWRRKKLYLLFAQHRYISRLFSVLIGSDIADKLYALNDRVYIGK 254
FQVT+ A+ +CR++ W R++L ++ +F LIG DI +KLY+LND K
Sbjct: 213 EKFQVTIIADDNCRFLCWSRERLTYFLESEPFLYEIFRYLIGKDITNKLYSLNDPTLNDK 272
Query: 255 R-YHYDIRLPNFYQMSTPEIRRS 276
+ + +L Q+S E+R S
Sbjct: 273 KAKKLEHQLSLCTQISMLEMRNS 295
>gi|22202608 blood vessel epicardial substance isoform 4 [Homo
sapiens]
Length = 360
Score = 149 bits (377), Expect = 2e-36
Identities = 87/263 (33%), Positives = 146/263 (55%), Gaps = 5/263 (1%)
Query: 18 CTTWKQEAEGAIYHLASILFVVGFMGGSGF-FGLLYVFSLLGLGFLCSAVWAWVDVCAAD 76
C W+ E ++H+A+I F VG + + ++++ +L LG VWA + CA D
Sbjct: 34 CENWR-EIHHLVFHVANICFAVGLVIPTTLHLHMIFLRGMLTLGCTLYIVWATLYRCALD 92
Query: 77 IFSWNFVLFVICFMQFVHIAYQVRSITFAREFQVLYSSLFQPLGISLPVFRTIALSSEVV 136
I WN V + + ++ Y+ R + +E +Y LF+PL + +FR + ++
Sbjct: 93 IMIWNSVFLGVNILHLSYLLYKKRPVKIEKELSGMYRRLFEPLRVPPDLFRRLTGQFCMI 152
Query: 137 -TLEKEHCYAMQGKTSID-KLSLLVSGRIRVTVDGEFLHYIFPLQFLDSPEWDSLRPTEE 194
TL+K YA + KTS+D +LS+L+ G+++V+ G FLH I+P F+DSPE+ S + +
Sbjct: 153 QTLKKGQTYAAEDKTSVDDRLSILLKGKMKVSYRGHFLHNIYPCAFIDSPEFRSTQMHKG 212
Query: 195 GIFQVTLTAETDCRYVSWRRKKLYLLFAQHRYISRLFSVLIGSDIADKLYALNDRVYIGK 254
FQVT+ A+ +CR++ W R++L ++ +F LIG DI +KLY+LND K
Sbjct: 213 EKFQVTIIADDNCRFLCWSRERLTYFLESEPFLYEIFRYLIGKDITNKLYSLNDPTLNDK 272
Query: 255 R-YHYDIRLPNFYQMSTPEIRRS 276
+ + +L Q+S E+R S
Sbjct: 273 KAKKLEHQLSLCTQISMLEMRNS 295
>gi|53850572 olfactory receptor, family 2, subfamily A, member 5
[Homo sapiens]
Length = 311
Score = 32.0 bits (71), Expect = 0.66
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 45 SGFFGLLYVFSLLGLGFLCSAVW 67
SG F LLYVF+LLG G + +W
Sbjct: 27 SGLFSLLYVFTLLGNGAILGLIW 49
>gi|50511934 transmembrane 4 superfamily member 17 isoform b [Homo
sapiens]
Length = 329
Score = 28.5 bits (62), Expect = 7.3
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 39 VGFMGGSGFFGLLYVFSLLGLGFLCSAVWAW 69
VG G FG VF +LG FL +WAW
Sbjct: 13 VGCCGKYFLFGFNIVFWVLGALFLAIGLWAW 43
>gi|54859560 transmembrane 4 superfamily member 17 isoform a [Homo
sapiens]
Length = 332
Score = 28.5 bits (62), Expect = 7.3
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 39 VGFMGGSGFFGLLYVFSLLGLGFLCSAVWAW 69
VG G FG VF +LG FL +WAW
Sbjct: 13 VGCCGKYFLFGFNIVFWVLGALFLAIGLWAW 43
>gi|54859505 transmembrane 4 superfamily member 17 isoform c [Homo
sapiens]
Length = 266
Score = 28.5 bits (62), Expect = 7.3
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 39 VGFMGGSGFFGLLYVFSLLGLGFLCSAVWAW 69
VG G FG VF +LG FL +WAW
Sbjct: 13 VGCCGKYFLFGFNIVFWVLGALFLAIGLWAW 43
>gi|4505835 polycystin 2 [Homo sapiens]
Length = 968
Score = 28.1 bits (61), Expect = 9.5
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 47 FFGLLYVFSLLGLGFLCSAVWAWVDVCAADIFSWNFVLFVICFMQFVHIAYQVRSITFAR 106
FF + +F + S + + CA D+F + + F+I F+ + +AY V T
Sbjct: 567 FFVWIKLFKFINFNRTMSQLSTTMSRCAKDLFGFAIMFFII-FLAYAQLAYLVFG-TQVD 624
Query: 107 EFQVLYSSLFQPLGISL 123
+F +F I L
Sbjct: 625 DFSTFQECIFTQFRIIL 641
>gi|95147335 inositol 1,4,5-triphosphate receptor, type 2 [Homo
sapiens]
Length = 2701
Score = 28.1 bits (61), Expect = 9.5
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 27 GAIYHLASILFVVGFMGGSGFFGLLYVFSLLGLGFLCSAVWAWVDVCAADI----FSWNF 82
GA I+F+V F+G G F Y +L + FL A+V VC + F ++F
Sbjct: 2312 GAANLCNKIVFLVSFVGNRGTFTRGYRAVILDMAFLYHV--AYVLVCMLGLFVHEFFYSF 2369
Query: 83 VLFVICFMQ 91
+LF + + +
Sbjct: 2370 LLFDLVYRE 2378
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.329 0.141 0.450
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,489,878
Number of Sequences: 37866
Number of extensions: 425860
Number of successful extensions: 1206
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1194
Number of HSP's gapped (non-prelim): 11
length of query: 291
length of database: 18,247,518
effective HSP length: 101
effective length of query: 190
effective length of database: 14,423,052
effective search space: 2740379880
effective search space used: 2740379880
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.