Search of human proteins with 21265080

Search of human proteins with 21265080

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|21265080 mitochondrial ribosomal protein L18 [Homo sapiens]
         (180 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|21265080 mitochondrial ribosomal protein L18 [Homo sapiens]        368   e-102
gi|169217181 PREDICTED: similar to RAB40A, member RAS oncogene f...    32   0.38 
gi|169216368 PREDICTED: similar to RAB40A, member RAS oncogene f...    32   0.38 
gi|169216631 PREDICTED: similar to RAB40A, member RAS oncogene f...    32   0.38 
gi|126116596 asp (abnormal spindle)-like, microcephaly associate...    28   4.3  
gi|115527120 nebulin [Homo sapiens]                                    28   5.6  
gi|109134340 tubulin tyrosine ligase-like family, member 3 [Homo...    27   7.3  

>gi|21265080 mitochondrial ribosomal protein L18 [Homo sapiens]
          Length = 180

 Score =  368 bits (945), Expect = e-102
 Identities = 180/180 (100%), Positives = 180/180 (100%)

Query: 1   MALRSRFWGLFSVCRNPGCRFAALSTSSEPAAKPEVDPVENEAVAPEFTNRNPRNLELLS 60
           MALRSRFWGLFSVCRNPGCRFAALSTSSEPAAKPEVDPVENEAVAPEFTNRNPRNLELLS
Sbjct: 1   MALRSRFWGLFSVCRNPGCRFAALSTSSEPAAKPEVDPVENEAVAPEFTNRNPRNLELLS 60

Query: 61  VARKERGWRTVFPSREFWHRLRVIRTQHHVEALVEHQNGKVVVSASTREWAIKKHLYSTR 120
           VARKERGWRTVFPSREFWHRLRVIRTQHHVEALVEHQNGKVVVSASTREWAIKKHLYSTR
Sbjct: 61  VARKERGWRTVFPSREFWHRLRVIRTQHHVEALVEHQNGKVVVSASTREWAIKKHLYSTR 120

Query: 121 NVVACESIGRVLAQRCLEAGINFMVYQPTPWEAASDSMKRLQSAMTEGGVVLREPQRIYE 180
           NVVACESIGRVLAQRCLEAGINFMVYQPTPWEAASDSMKRLQSAMTEGGVVLREPQRIYE
Sbjct: 121 NVVACESIGRVLAQRCLEAGINFMVYQPTPWEAASDSMKRLQSAMTEGGVVLREPQRIYE 180


>gi|169217181 PREDICTED: similar to RAB40A, member RAS oncogene
           family [Homo sapiens]
          Length = 224

 Score = 31.6 bits (70), Expect = 0.38
 Identities = 27/84 (32%), Positives = 34/84 (40%), Gaps = 3/84 (3%)

Query: 18  GCRFAALSTSSEPAAKPEVDPVENEAVAPEFTNRNPRNLELLSVARKERGWRTVFPSREF 77
           GC+ A LS    P  +    P E +AV      R   N +   VAR E  WR V PS+  
Sbjct: 65  GCQVATLSAPLSPPERSR--PPEPDAVWGYPQTRCIEN-QSECVARGEEAWRAVDPSQNL 121

Query: 78  WHRLRVIRTQHHVEALVEHQNGKV 101
              L ++R    V        GKV
Sbjct: 122 GLALTILREDKGVSRSYFPSKGKV 145


>gi|169216368 PREDICTED: similar to RAB40A, member RAS oncogene
           family [Homo sapiens]
          Length = 224

 Score = 31.6 bits (70), Expect = 0.38
 Identities = 27/84 (32%), Positives = 34/84 (40%), Gaps = 3/84 (3%)

Query: 18  GCRFAALSTSSEPAAKPEVDPVENEAVAPEFTNRNPRNLELLSVARKERGWRTVFPSREF 77
           GC+ A LS    P  +    P E +AV      R   N +   VAR E  WR V PS+  
Sbjct: 65  GCQVATLSAPLSPPERSR--PPEPDAVWGYPQTRCIEN-QSECVARGEEAWRAVDPSQNL 121

Query: 78  WHRLRVIRTQHHVEALVEHQNGKV 101
              L ++R    V        GKV
Sbjct: 122 GLALTILREDKGVSRSYFPSKGKV 145


>gi|169216631 PREDICTED: similar to RAB40A, member RAS oncogene
           family [Homo sapiens]
          Length = 224

 Score = 31.6 bits (70), Expect = 0.38
 Identities = 27/84 (32%), Positives = 34/84 (40%), Gaps = 3/84 (3%)

Query: 18  GCRFAALSTSSEPAAKPEVDPVENEAVAPEFTNRNPRNLELLSVARKERGWRTVFPSREF 77
           GC+ A LS    P  +    P E +AV      R   N +   VAR E  WR V PS+  
Sbjct: 65  GCQVATLSAPLSPPERSR--PPEPDAVWGYPQTRCIEN-QSECVARGEEAWRAVDPSQNL 121

Query: 78  WHRLRVIRTQHHVEALVEHQNGKV 101
              L ++R    V        GKV
Sbjct: 122 GLALTILREDKGVSRSYFPSKGKV 145


>gi|126116596 asp (abnormal spindle)-like, microcephaly associated
            [Homo sapiens]
          Length = 3477

 Score = 28.1 bits (61), Expect = 4.3
 Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 14/76 (18%)

Query: 54   RNLELLSVARK--ERGWRTVFPSREFWHRLRV-----------IRTQHHVEALVEHQNGK 100
            R+L+++ +A    +R +RT+   R F    +            + T+HH++ L + QN  
Sbjct: 2257 RHLKMMHIAATLIQRRFRTLMMRRRFLSLKKTAILIQRKYRAHLCTKHHLQFL-QVQNAV 2315

Query: 101  VVVSASTREWAIKKHL 116
            + + +S R W I+K +
Sbjct: 2316 IKIQSSYRRWMIRKRM 2331


>gi|115527120 nebulin [Homo sapiens]
          Length = 6669

 Score = 27.7 bits (60), Expect = 5.6
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 6/55 (10%)

Query: 88   HHVEALVEHQNGKVVVSA------STREWAIKKHLYSTRNVVACESIGRVLAQRC 136
            HH+ A   H + K++ S       S RE+      Y TR     + +G VLA++C
Sbjct: 3290 HHIGARAVHDDPKIMWSLHIAKVQSDREYKKDFEKYKTRYSSPVDMLGIVLAKKC 3344


>gi|109134340 tubulin tyrosine ligase-like family, member 3 [Homo
           sapiens]
          Length = 772

 Score = 27.3 bits (59), Expect = 7.3
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 15/75 (20%)

Query: 42  EAVAPEFTNRNPRNLELLSVARKERGWRTVFPSREFWHRLRVIRTQHHVEALVEHQNGKV 101
           +AV P+      RN+ ++    K RG              R I    H+E +++  NG  
Sbjct: 265 QAVVPQIDMEGDRNIWIVKPGAKSRG--------------RGIMCMDHLEEMLKLVNGNP 310

Query: 102 VVSASTREWAIKKHL 116
           VV    + W ++K++
Sbjct: 311 VVMKDGK-WVVQKYI 324


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.131    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,712,906
Number of Sequences: 37866
Number of extensions: 261742
Number of successful extensions: 646
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 642
Number of HSP's gapped (non-prelim): 7
length of query: 180
length of database: 18,247,518
effective HSP length: 96
effective length of query: 84
effective length of database: 14,612,382
effective search space: 1227440088
effective search space used: 1227440088
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.