Search of human proteins with 20127457

Search of human proteins with 20127457

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|20127457 glycogenin 1 [Homo sapiens]
         (350 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|20127457 glycogenin 1 [Homo sapiens]                               714   0.0  
gi|119943093 glycogenin 2 isoform a [Homo sapiens]                    370   e-102
gi|119964690 glycogenin 2 isoform b [Homo sapiens]                    370   e-102
gi|4504059 gonadotropin-releasing hormone receptor isoform 1 [Ho...    29   7.2  
gi|4758942 septin 4 isoform 1 [Homo sapiens]                           28   9.4  
gi|17986247 septin 4 isoform 3 [Homo sapiens]                          28   9.4  
gi|17986245 septin 4 isoform 2 [Homo sapiens]                          28   9.4  

>gi|20127457 glycogenin 1 [Homo sapiens]
          Length = 350

 Score =  714 bits (1843), Expect = 0.0
 Identities = 350/350 (100%), Positives = 350/350 (100%)

Query: 1   MTDQAFVTLTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEVIM 60
           MTDQAFVTLTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEVIM
Sbjct: 1   MTDQAFVTLTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEVIM 60

Query: 61  VDVLDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDREEL 120
           VDVLDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDREEL
Sbjct: 61  VDVLDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDREEL 120

Query: 121 SAAPDPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSFDGGDQGILNTFFSSWATTDIR 180
           SAAPDPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSFDGGDQGILNTFFSSWATTDIR
Sbjct: 121 SAAPDPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSFDGGDQGILNTFFSSWATTDIR 180

Query: 181 KHLPFIYNLSSISIYSYLPAFKVFGASAKVVHFLGRVKPWNYTYDPKTKSVKSEAHDPNM 240
           KHLPFIYNLSSISIYSYLPAFKVFGASAKVVHFLGRVKPWNYTYDPKTKSVKSEAHDPNM
Sbjct: 181 KHLPFIYNLSSISIYSYLPAFKVFGASAKVVHFLGRVKPWNYTYDPKTKSVKSEAHDPNM 240

Query: 241 THPEFLILWWNIFTTNVLPLLQQFGLVKDTCSYVNVLSDLVYTLAFSCGFCRKEDVSGAI 300
           THPEFLILWWNIFTTNVLPLLQQFGLVKDTCSYVNVLSDLVYTLAFSCGFCRKEDVSGAI
Sbjct: 241 THPEFLILWWNIFTTNVLPLLQQFGLVKDTCSYVNVLSDLVYTLAFSCGFCRKEDVSGAI 300

Query: 301 SHLSLGEIPAMAQPFVSSEERKERWEQGQADYMGADSFDNIKRKLDTYLQ 350
           SHLSLGEIPAMAQPFVSSEERKERWEQGQADYMGADSFDNIKRKLDTYLQ
Sbjct: 301 SHLSLGEIPAMAQPFVSSEERKERWEQGQADYMGADSFDNIKRKLDTYLQ 350


>gi|119943093 glycogenin 2 isoform a [Homo sapiens]
          Length = 470

 Score =  370 bits (950), Expect = e-102
 Identities = 174/261 (66%), Positives = 210/261 (80%), Gaps = 1/261 (0%)

Query: 1   MTDQAFVTLTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEVIM 60
           +TDQAFVTL TND Y +GALVLG SL++HR TR+LVVL TPQVS  +R +L  VFDEVI 
Sbjct: 3   VTDQAFVTLATNDIYCQGALVLGQSLRRHRLTRKLVVLITPQVSSLLRVILSKVFDEVIE 62

Query: 61  VDVLDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDREEL 120
           V+++DS D  HL  +KRPELG+TLTKLHCW+LT YSKCVF+DADTLVL+N+D+LFDR E 
Sbjct: 63  VNLIDSADYIHLAFLKRPELGLTLTKLHCWTLTHYSKCVFLDADTLVLSNVDELFDRGEF 122

Query: 121 SAAPDPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSFDGGDQGILNTFFSSWATTDIR 180
           SAAPDPGWPDCFNSGVFV+QPS+ T+  LL  A E GSFDG DQG+LN+FF +W+TTDI 
Sbjct: 123 SAAPDPGWPDCFNSGVFVFQPSLHTHKLLLQHAMEHGSFDGADQGLLNSFFRNWSTTDIH 182

Query: 181 KHLPFIYNLSSISIYSYLPAFKVFGASAKVVHFLGRVKPWNYTYDPKTKSVKSEAHDPNM 240
           KHLPFIYNLSS ++Y+Y PAFK FG+SAKVVHFLG +KPWNY Y+P++ SV  +    + 
Sbjct: 183 KHLPFIYNLSSNTMYTYSPAFKQFGSSAKVVHFLGSMKPWNYKYNPQSGSVLEQGSASSS 242

Query: 241 TH-PEFLILWWNIFTTNVLPL 260
            H   FL LWW ++  NVLPL
Sbjct: 243 QHQAAFLHLWWTVYQNNVLPL 263



 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 4/56 (7%)

Query: 295 DVSGAISHLSLGEIPAMAQPFVSSEERKERWEQGQADYMGADSFDNIKRKLDTYLQ 350
           D++ ++S +S+ E      P    EE + +WE+G+ DYMG D+F  I+ KLD +LQ
Sbjct: 419 DLAVSVSQISIEEKVKELSP----EEERRKWEEGRIDYMGKDAFARIQEKLDRFLQ 470


>gi|119964690 glycogenin 2 isoform b [Homo sapiens]
          Length = 501

 Score =  370 bits (950), Expect = e-102
 Identities = 174/261 (66%), Positives = 210/261 (80%), Gaps = 1/261 (0%)

Query: 1   MTDQAFVTLTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEVIM 60
           +TDQAFVTL TND Y +GALVLG SL++HR TR+LVVL TPQVS  +R +L  VFDEVI 
Sbjct: 34  VTDQAFVTLATNDIYCQGALVLGQSLRRHRLTRKLVVLITPQVSSLLRVILSKVFDEVIE 93

Query: 61  VDVLDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDREEL 120
           V+++DS D  HL  +KRPELG+TLTKLHCW+LT YSKCVF+DADTLVL+N+D+LFDR E 
Sbjct: 94  VNLIDSADYIHLAFLKRPELGLTLTKLHCWTLTHYSKCVFLDADTLVLSNVDELFDRGEF 153

Query: 121 SAAPDPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSFDGGDQGILNTFFSSWATTDIR 180
           SAAPDPGWPDCFNSGVFV+QPS+ T+  LL  A E GSFDG DQG+LN+FF +W+TTDI 
Sbjct: 154 SAAPDPGWPDCFNSGVFVFQPSLHTHKLLLQHAMEHGSFDGADQGLLNSFFRNWSTTDIH 213

Query: 181 KHLPFIYNLSSISIYSYLPAFKVFGASAKVVHFLGRVKPWNYTYDPKTKSVKSEAHDPNM 240
           KHLPFIYNLSS ++Y+Y PAFK FG+SAKVVHFLG +KPWNY Y+P++ SV  +    + 
Sbjct: 214 KHLPFIYNLSSNTMYTYSPAFKQFGSSAKVVHFLGSMKPWNYKYNPQSGSVLEQGSASSS 273

Query: 241 TH-PEFLILWWNIFTTNVLPL 260
            H   FL LWW ++  NVLPL
Sbjct: 274 QHQAAFLHLWWTVYQNNVLPL 294



 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 4/56 (7%)

Query: 295 DVSGAISHLSLGEIPAMAQPFVSSEERKERWEQGQADYMGADSFDNIKRKLDTYLQ 350
           D++ ++S +S+ E      P    EE + +WE+G+ DYMG D+F  I+ KLD +LQ
Sbjct: 450 DLAVSVSQISIEEKVKELSP----EEERRKWEEGRIDYMGKDAFARIQEKLDRFLQ 501


>gi|4504059 gonadotropin-releasing hormone receptor isoform 1 [Homo
           sapiens]
          Length = 328

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 7/70 (10%)

Query: 148 QLLHLASEQGSFDGGDQGILNTFFSSWATTDIRKHLPFIYNLSSISIYSYLPAFKVFGAS 207
           +++HLA   G      Q + +  FS W       H  F YN  + S    +P F +   +
Sbjct: 179 RMIHLADSSGQTKVFSQCVTHCSFSQWW------HQAF-YNFFTFSCLFIIPLFIMLICN 231

Query: 208 AKVVHFLGRV 217
           AK++  L RV
Sbjct: 232 AKIIFTLTRV 241


>gi|4758942 septin 4 isoform 1 [Homo sapiens]
          Length = 478

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 49  KVLETVFDEVIMVDVLDSGDSAHLTLMKRPELGVTLTKLHCWS-----LTQYSKCVFMDA 103
           ++++TV      VD+ + G    LT++  P  G  +    CW      + Q  +  F D 
Sbjct: 181 RIMQTVEITKHAVDIEEKGVRLRLTIVDTPGFGDAVNNTECWKPVAEYIDQQFEQYFRDE 240

Query: 104 DTLVLANIDD 113
             L   NI D
Sbjct: 241 SGLNRKNIQD 250


>gi|17986247 septin 4 isoform 3 [Homo sapiens]
          Length = 459

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 49  KVLETVFDEVIMVDVLDSGDSAHLTLMKRPELGVTLTKLHCWS-----LTQYSKCVFMDA 103
           ++++TV      VD+ + G    LT++  P  G  +    CW      + Q  +  F D 
Sbjct: 162 RIMQTVEITKHAVDIEEKGVRLRLTIVDTPGFGDAVNNTECWKPVAEYIDQQFEQYFRDE 221

Query: 104 DTLVLANIDD 113
             L   NI D
Sbjct: 222 SGLNRKNIQD 231


>gi|17986245 septin 4 isoform 2 [Homo sapiens]
          Length = 274

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 49  KVLETVFDEVIMVDVLDSGDSAHLTLMKRPELGVTLTKLHCWS-----LTQYSKCVFMDA 103
           ++++TV      VD+ + G    LT++  P  G  +    CW      + Q  +  F D 
Sbjct: 162 RIMQTVEITKHAVDIEEKGVRLRLTIVDTPGFGDAVNNTECWKPVAEYIDQQFEQYFRDE 221

Query: 104 DTLVLANIDD 113
             L   NI D
Sbjct: 222 SGLNRKNIQD 231


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.135    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,662,955
Number of Sequences: 37866
Number of extensions: 543087
Number of successful extensions: 1086
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1078
Number of HSP's gapped (non-prelim): 9
length of query: 350
length of database: 18,247,518
effective HSP length: 103
effective length of query: 247
effective length of database: 14,347,320
effective search space: 3543788040
effective search space used: 3543788040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.