Search of human proteins with 19923961

Search of human proteins with 19923961

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|19923961 hypothetical protein LOC113763 [Homo sapiens]
         (236 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|19923961 hypothetical protein LOC113763 [Homo sapiens]             477   e-135
gi|153791893 zinc finger, BED-type containing 4 [Homo sapiens]         38   0.007
gi|66932975 gephyrin isoform 2 [Homo sapiens]                          32   0.36 
gi|150418009 transforming, acidic coiled-coil containing protein...    32   0.62 
gi|59710085 hypothetical protein LOC146562 [Homo sapiens]              31   0.81 
gi|7662018 PHD finger protein 3 [Homo sapiens]                         28   5.3  

>gi|19923961 hypothetical protein LOC113763 [Homo sapiens]
          Length = 236

 Score =  477 bits (1228), Expect = e-135
 Identities = 236/236 (100%), Positives = 236/236 (100%)

Query: 1   MVVREASAAQASLSQVLPQLRYLHIFLEQVHTHFQEQSVGERGAAIQLAEGLARQLCTDC 60
           MVVREASAAQASLSQVLPQLRYLHIFLEQVHTHFQEQSVGERGAAIQLAEGLARQLCTDC
Sbjct: 1   MVVREASAAQASLSQVLPQLRYLHIFLEQVHTHFQEQSVGERGAAIQLAEGLARQLCTDC 60

Query: 61  QLNKLFYREEFVLATLLDPCFKGKIEAILPWGPTDIDHWKQVLVYKVKEIRVSEYSLNSP 120
           QLNKLFYREEFVLATLLDPCFKGKIEAILPWGPTDIDHWKQVLVYKVKEIRVSEYSLNSP
Sbjct: 61  QLNKLFYREEFVLATLLDPCFKGKIEAILPWGPTDIDHWKQVLVYKVKEIRVSEYSLNSP 120

Query: 121 SPLQSPRGLCVDPTRVAKSSGVEGRSQGEPLQSSSHSGAFLLAQREKGLLESMGLLASER 180
           SPLQSPRGLCVDPTRVAKSSGVEGRSQGEPLQSSSHSGAFLLAQREKGLLESMGLLASER
Sbjct: 121 SPLQSPRGLCVDPTRVAKSSGVEGRSQGEPLQSSSHSGAFLLAQREKGLLESMGLLASER 180

Query: 181 SGGSLSTKSHWASIIVKKYLWENETVGAQDDPLAYWEKKREAWPPSICLTPHRSLL 236
           SGGSLSTKSHWASIIVKKYLWENETVGAQDDPLAYWEKKREAWPPSICLTPHRSLL
Sbjct: 181 SGGSLSTKSHWASIIVKKYLWENETVGAQDDPLAYWEKKREAWPPSICLTPHRSLL 236


>gi|153791893 zinc finger, BED-type containing 4 [Homo sapiens]
          Length = 1171

 Score = 38.1 bits (87), Expect = 0.007
 Identities = 50/221 (22%), Positives = 87/221 (39%), Gaps = 53/221 (23%)

Query: 4    REASAAQASLSQVLPQLRYLHIFLEQVHTHFQEQSVGERGAAIQLAEGLARQLCTDCQLN 63
            RE S   ++LSQV+P +   HI   +V   F+E ++G       L E +  +L      +
Sbjct: 945  REMSTQMSTLSQVIPMV---HILNRKVEMLFEE-TMGIDTMLRSLKEAMVSRL------S 994

Query: 64   KLFYREEFVLATLLDPCFKGKIEAILPWGPTDIDHWKQVLVYKVKEIRVSEYSLNSPSPL 123
               +   +V ATLLDP +K  +     +   + + +KQ L+ +++        +NS S  
Sbjct: 995  ATLHDPRYVFATLLDPRYKASL-----FTEEEAEQYKQDLIRELE-------LMNSTS-- 1040

Query: 124  QSPRGLCVDPTRVAKSSGVEGRSQGEPLQSSSHSGAFLLAQREKGLLESMGLLASERSGG 183
                        VA S   +  S  +   +  +  + +   ++K   E +          
Sbjct: 1041 ----------EDVAASHRCDAGSPSKDSAAEENLWSLVAKVKKKDPREKL---------- 1080

Query: 184  SLSTKSHWASIIVKKYLWENETVGAQDDPLAYWEKKREAWP 224
                       +V  YL E E +    DPL YW  K+ +WP
Sbjct: 1081 --------PEAMVLAYL-EEEVLEHSCDPLTYWNLKKASWP 1112


>gi|66932975 gephyrin isoform 2 [Homo sapiens]
          Length = 736

 Score = 32.3 bits (72), Expect = 0.36
 Identities = 36/113 (31%), Positives = 46/113 (40%), Gaps = 18/113 (15%)

Query: 88  ILPWGPTDIDHWKQVLVYKVKEIRVSEYSLNSPSPLQSP------------RGL-CVDPT 134
           ILP  P  ID  +  +V KVKE+      L SP P  SP            +G+ C +  
Sbjct: 158 ILPALPHAIDLLRDAIV-KVKEVHDELEDLPSPPPPLSPPPTTSPHKQTEDKGVQCEEEE 216

Query: 135 RVAKSSGVEGRSQGEPLQSSSHSGAFLLAQREKGLLESMGLLASERSGGSLST 187
              K SGV          SSSH  A  +A +    + S G+    R   SLST
Sbjct: 217 EEKKDSGVASTED----SSSSHITAAAIAAKIPDSIISRGVQVLPRDTASLST 265


>gi|150418009 transforming, acidic coiled-coil containing protein 2
           isoform a [Homo sapiens]
          Length = 2948

 Score = 31.6 bits (70), Expect = 0.62
 Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 12/109 (11%)

Query: 117 LNSPSPLQSPRGLCVDPTRVAKSSGVEGRSQGEPLQSSSHSGAFLLAQREKGLLESMGLL 176
           L SP     PRG   D +R    +GV    QGE L +     A +L Q ++G+    G  
Sbjct: 756 LTSPD---QPRGPACDASRQEFHAGVPHPPQGENLAADLGLTALILDQDQQGIPSCPG-- 810

Query: 177 ASERSGGSLSTKSHWASIIVKKYLWENETVGAQDDPLAYWEKKREAWPP 225
                G      S W  +  +K+L  ++   AQ +   +   K +A PP
Sbjct: 811 ----EGWIRGAASEWPLLSSEKHLQPSQ---AQPETSIFDVLKEQAQPP 852


>gi|59710085 hypothetical protein LOC146562 [Homo sapiens]
          Length = 520

 Score = 31.2 bits (69), Expect = 0.81
 Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 9/80 (11%)

Query: 110 IRVSEYSLNSPSPLQSPRGLCVDP-----TRVAKSSGVEGRSQGEPLQSSSHSGAFL-LA 163
           +  +E SL  P P+  P  L  +P     TR   +S  EGR  G P +SS    A L +A
Sbjct: 83  VAAAEESL--PEPVLVPAELATEPGCRQNTRTKDASSQEGRDPGRPFESSGEVSALLGMA 140

Query: 164 QREKGLLE-SMGLLASERSG 182
           +     LE  +G L+    G
Sbjct: 141 EEPPRWLEGDLGSLSFNTKG 160


>gi|7662018 PHD finger protein 3 [Homo sapiens]
          Length = 2039

 Score = 28.5 bits (62), Expect = 5.3
 Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 2/99 (2%)

Query: 92  GPTDIDHWKQVLVYKVKEIRVSEYSLNSPSPLQSPRGLCVDPTRVAKSSGVEGRSQGEPL 151
           G   ID  + +L  +    +V E S+ SP   +SPR +  +  R  + S +  RS   PL
Sbjct: 98  GNDTIDEEELILPNRNLRDKVEENSVRSPR--KSPRLMAQEQVRSLRQSTIAKRSNAAPL 155

Query: 152 QSSSHSGAFLLAQREKGLLESMGLLASERSGGSLSTKSH 190
            ++  +    ++  + G+ +       E    SL  + H
Sbjct: 156 SNTKKASGKTVSTAKAGVKQPERSQVKEEVCMSLKPEYH 194


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.132    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,109,767
Number of Sequences: 37866
Number of extensions: 393026
Number of successful extensions: 1003
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 997
Number of HSP's gapped (non-prelim): 8
length of query: 236
length of database: 18,247,518
effective HSP length: 99
effective length of query: 137
effective length of database: 14,498,784
effective search space: 1986333408
effective search space used: 1986333408
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.