Search of human proteins with 197333863

Search of human proteins with 197333863

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|197333863 hypothetical protein LOC205428 isoform b [Homo
sapiens]
         (221 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|197333863 hypothetical protein LOC205428 isoform b [Homo sapi...   462   e-131
gi|27734895 hypothetical protein LOC205428 isoform a [Homo sapiens]   444   e-125
gi|193804854 hypothetical protein LOC79742 isoform 1 [Homo sapiens]    70   1e-12
gi|195546915 hypothetical protein LOC125704 [Homo sapiens]             38   0.008
gi|37655175 zinc finger protein 26 [Homo sapiens]                      30   1.2  

>gi|197333863 hypothetical protein LOC205428 isoform b [Homo
           sapiens]
          Length = 221

 Score =  462 bits (1190), Expect = e-131
 Identities = 221/221 (100%), Positives = 221/221 (100%)

Query: 1   MKSENGTVVGSFPSDEGWPFAKYLGACGRMVAVNYVGEELWSYFNAPWEKRVDLAWQLME 60
           MKSENGTVVGSFPSDEGWPFAKYLGACGRMVAVNYVGEELWSYFNAPWEKRVDLAWQLME
Sbjct: 1   MKSENGTVVGSFPSDEGWPFAKYLGACGRMVAVNYVGEELWSYFNAPWEKRVDLAWQLME 60

Query: 61  IAEQLTNNDFEFALYLLDVSFDNFAVGPRDGKVIIVDAENVLVADKRLIRQNKPENWDVW 120
           IAEQLTNNDFEFALYLLDVSFDNFAVGPRDGKVIIVDAENVLVADKRLIRQNKPENWDVW
Sbjct: 61  IAEQLTNNDFEFALYLLDVSFDNFAVGPRDGKVIIVDAENVLVADKRLIRQNKPENWDVW 120

Query: 121 YESKFDDCDKEACLSFSKEILCARATVDHNYYAVCQNLLSRHATWRGTSGGLLHDPPSEI 180
           YESKFDDCDKEACLSFSKEILCARATVDHNYYAVCQNLLSRHATWRGTSGGLLHDPPSEI
Sbjct: 121 YESKFDDCDKEACLSFSKEILCARATVDHNYYAVCQNLLSRHATWRGTSGGLLHDPPSEI 180

Query: 181 AKDGRLEALLDECANPKKRYGRFQAAKELREYLAQLSNNVR 221
           AKDGRLEALLDECANPKKRYGRFQAAKELREYLAQLSNNVR
Sbjct: 181 AKDGRLEALLDECANPKKRYGRFQAAKELREYLAQLSNNVR 221


>gi|27734895 hypothetical protein LOC205428 isoform a [Homo sapiens]
          Length = 430

 Score =  444 bits (1143), Expect = e-125
 Identities = 212/214 (99%), Positives = 213/214 (99%)

Query: 8   VVGSFPSDEGWPFAKYLGACGRMVAVNYVGEELWSYFNAPWEKRVDLAWQLMEIAEQLTN 67
           V+ SFPSDEGWPFAKYLGACGRMVAVNYVGEELWSYFNAPWEKRVDLAWQLMEIAEQLTN
Sbjct: 217 VLQSFPSDEGWPFAKYLGACGRMVAVNYVGEELWSYFNAPWEKRVDLAWQLMEIAEQLTN 276

Query: 68  NDFEFALYLLDVSFDNFAVGPRDGKVIIVDAENVLVADKRLIRQNKPENWDVWYESKFDD 127
           NDFEFALYLLDVSFDNFAVGPRDGKVIIVDAENVLVADKRLIRQNKPENWDVWYESKFDD
Sbjct: 277 NDFEFALYLLDVSFDNFAVGPRDGKVIIVDAENVLVADKRLIRQNKPENWDVWYESKFDD 336

Query: 128 CDKEACLSFSKEILCARATVDHNYYAVCQNLLSRHATWRGTSGGLLHDPPSEIAKDGRLE 187
           CDKEACLSFSKEILCARATVDHNYYAVCQNLLSRHATWRGTSGGLLHDPPSEIAKDGRLE
Sbjct: 337 CDKEACLSFSKEILCARATVDHNYYAVCQNLLSRHATWRGTSGGLLHDPPSEIAKDGRLE 396

Query: 188 ALLDECANPKKRYGRFQAAKELREYLAQLSNNVR 221
           ALLDECANPKKRYGRFQAAKELREYLAQLSNNVR
Sbjct: 397 ALLDECANPKKRYGRFQAAKELREYLAQLSNNVR 430


>gi|193804854 hypothetical protein LOC79742 isoform 1 [Homo sapiens]
          Length = 433

 Score = 70.1 bits (170), Expect = 1e-12
 Identities = 50/153 (32%), Positives = 72/153 (47%), Gaps = 13/153 (8%)

Query: 12  FPSDEGWPFAKYLGACGRMVAVNYVGEELWSYFNAPWEKRVDLAWQLMEIAEQLTNNDFE 71
           FP  EGWP  KYLG+CGR + V+     L  +++AP ++  DLA+QL+ + E L +ND  
Sbjct: 226 FPGAEGWPLPKYLGSCGRFL-VSTSTRPLQEFYDAPPDQAADLAYQLLGVLESLRSNDLN 284

Query: 72  FALYLLDVSFDNFAVGPRDGKVIIVDAENVLVADKRLIRQ---NKPENWDVWYESKFDDC 128
           +  Y   +    F V   +G + I DA  V V DK+   Q      EN D++       C
Sbjct: 285 YFFYFTHIDAGMFGVF-NNGHLFIRDASAVGVIDKQEGSQEANRAGENKDIF------SC 337

Query: 129 DKEACLSFSKEILCARATVDHNYYAVCQNLLSR 161
               C +      C   +   +   VCQ LL R
Sbjct: 338 LVSGCQAQLPS--CESISEKQSLVLVCQKLLPR 368


>gi|195546915 hypothetical protein LOC125704 [Homo sapiens]
          Length = 419

 Score = 37.7 bits (86), Expect = 0.008
 Identities = 44/185 (23%), Positives = 72/185 (38%), Gaps = 24/185 (12%)

Query: 24  LGACGRMVAVNYVG------EELWSYFNAPWEKRVDLAWQLMEIAEQLTN------NDFE 71
           LG+CG   AV ++         L+    AP       A  + +IA    +      +DF 
Sbjct: 213 LGSCGHFYAVEFLAAGSPHHRALFPLDRAPGAPGGGQAKAISDIALSFLDMVNHFDSDFS 272

Query: 72  FALYLLDVSFDNFAVGPRDGKVIIVDAENVLVADKRLIRQNKPENWDVWYESKFDDCDKE 131
             L+L D+  +NFA+   D  V+ +D +      K  +R+   +N     +  F DC   
Sbjct: 273 HRLHLCDIKPENFAI-RSDFTVVAIDVDMAFFEPK--MREILEQNCTGDEDCNFFDCFSR 329

Query: 132 ACLSFSKEILCARATVDHNYYAVCQNLLSRHATWRGTSGGLLHDPPSEIAKDGRLEALLD 191
             L  +K   C    V++N   +C  +  RH  W       L           +L+  + 
Sbjct: 330 CDLRVNK---CGAQRVNNNLQVICDKIF-RH--WFSAP---LKSSAVSFQLQLQLQEAVQ 380

Query: 192 ECANP 196
           ECA+P
Sbjct: 381 ECADP 385


>gi|37655175 zinc finger protein 26 [Homo sapiens]
          Length = 533

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 16/74 (21%), Positives = 34/74 (45%), Gaps = 1/74 (1%)

Query: 56  WQLMEIAEQLTNNDFEFALYLLDVSFDNFAVGPRDGKVIIVDAENVLVADKRLIRQNKPE 115
           WQL++  ++    D     Y   +S       P D    +   E+  + + ++ RQ+ P+
Sbjct: 28  WQLLDSTQKYLYRDVILENYHNLISVGYHGTKP-DLIFKLEQGEDPWIINAKISRQSCPD 86

Query: 116 NWDVWYESKFDDCD 129
            W+ WY++  D+ +
Sbjct: 87  GWEEWYQNNQDELE 100


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.135    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,793,477
Number of Sequences: 37866
Number of extensions: 364617
Number of successful extensions: 700
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 695
Number of HSP's gapped (non-prelim): 5
length of query: 221
length of database: 18,247,518
effective HSP length: 98
effective length of query: 123
effective length of database: 14,536,650
effective search space: 1788007950
effective search space used: 1788007950
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.