Search of human proteins with 196123591

Search of human proteins with 196123591

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|196123591 cytochrome b [Homo sapiens neanderthalensis]
         (378 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|196123591 cytochrome b [Homo sapiens neanderthalensis]             769   0.0  
gi|251831119 cytochrome b [Homo sapiens]                              757   0.0  
gi|50897292 olfactory receptor, family 8, subfamily D, member 2 ...    32   0.72 
gi|216548223 synaptic vesicle glycoprotein 2 [Homo sapiens]            30   2.7  
gi|213021148 SVOP-like isoform 1 [Homo sapiens]                        30   2.7  
gi|51230656 olfactory receptor, family 8, subfamily I, member 2 ...    30   2.7  
gi|14424433 ATPase, class V, type 10A [Homo sapiens]                   30   4.7  
gi|110431368 ectonucleoside triphosphate diphosphohydrolase 8 is...    29   6.1  
gi|110431366 ectonucleoside triphosphate diphosphohydrolase 8 is...    29   6.1  
gi|12965178 taste receptor, type 2, member 13 [Homo sapiens]           29   8.0  

>gi|196123591 cytochrome b [Homo sapiens neanderthalensis]
          Length = 378

 Score =  769 bits (1985), Expect = 0.0
 Identities = 378/378 (100%), Positives = 378/378 (100%)

Query: 1   MTPMRKINPLMKLINHSFIDLPTPSNISAWWNFGSLLGACLILQITTGLFLAMHYSPDAS 60
           MTPMRKINPLMKLINHSFIDLPTPSNISAWWNFGSLLGACLILQITTGLFLAMHYSPDAS
Sbjct: 1   MTPMRKINPLMKLINHSFIDLPTPSNISAWWNFGSLLGACLILQITTGLFLAMHYSPDAS 60

Query: 61  TAFSSIAHITRDVNYGWIIRYLHANGASMFFICLFLHIGRGLYYGSFLYSKTWNIGIILL 120
           TAFSSIAHITRDVNYGWIIRYLHANGASMFFICLFLHIGRGLYYGSFLYSKTWNIGIILL
Sbjct: 61  TAFSSIAHITRDVNYGWIIRYLHANGASMFFICLFLHIGRGLYYGSFLYSKTWNIGIILL 120

Query: 121 LATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVQWIWGGYSVDSPTLTRFFT 180
           LATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVQWIWGGYSVDSPTLTRFFT
Sbjct: 121 LATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVQWIWGGYSVDSPTLTRFFT 180

Query: 181 FHFILPFIIAALAALHLLFLHETGSNNPLGITSHSDKITFHPYYTIKDALGLFLFLLSLM 240
           FHFILPFIIAALAALHLLFLHETGSNNPLGITSHSDKITFHPYYTIKDALGLFLFLLSLM
Sbjct: 181 FHFILPFIIAALAALHLLFLHETGSNNPLGITSHSDKITFHPYYTIKDALGLFLFLLSLM 240

Query: 241 TLTLLSPDLLGDPDNYTLANPLNTPPHIKPEWYFLFAYTILRSVPNKLGGVLALLLSILI 300
           TLTLLSPDLLGDPDNYTLANPLNTPPHIKPEWYFLFAYTILRSVPNKLGGVLALLLSILI
Sbjct: 241 TLTLLSPDLLGDPDNYTLANPLNTPPHIKPEWYFLFAYTILRSVPNKLGGVLALLLSILI 300

Query: 301 LAMIPILHVSKQQSMMFRPLSQSLYWLLAADLLILTWIGGQPVSYPFIIIGQVASVLYFT 360
           LAMIPILHVSKQQSMMFRPLSQSLYWLLAADLLILTWIGGQPVSYPFIIIGQVASVLYFT
Sbjct: 301 LAMIPILHVSKQQSMMFRPLSQSLYWLLAADLLILTWIGGQPVSYPFIIIGQVASVLYFT 360

Query: 361 TILILMPTISLIENKMLK 378
           TILILMPTISLIENKMLK
Sbjct: 361 TILILMPTISLIENKMLK 378


>gi|251831119 cytochrome b [Homo sapiens]
          Length = 380

 Score =  757 bits (1954), Expect = 0.0
 Identities = 371/378 (98%), Positives = 373/378 (98%)

Query: 1   MTPMRKINPLMKLINHSFIDLPTPSNISAWWNFGSLLGACLILQITTGLFLAMHYSPDAS 60
           MTPMRK NPLMKLINHSFIDLPTPSNISAWWNFGSLLGACLILQITTGLFLAMHYSPDAS
Sbjct: 1   MTPMRKTNPLMKLINHSFIDLPTPSNISAWWNFGSLLGACLILQITTGLFLAMHYSPDAS 60

Query: 61  TAFSSIAHITRDVNYGWIIRYLHANGASMFFICLFLHIGRGLYYGSFLYSKTWNIGIILL 120
           TAFSSIAHITRDVNYGWIIRYLHANGASMFFICLFLHIGRGLYYGSFLYS+TWNIGIILL
Sbjct: 61  TAFSSIAHITRDVNYGWIIRYLHANGASMFFICLFLHIGRGLYYGSFLYSETWNIGIILL 120

Query: 121 LATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVQWIWGGYSVDSPTLTRFFT 180
           LATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVQWIWGGYSVDSPTLTRFFT
Sbjct: 121 LATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVQWIWGGYSVDSPTLTRFFT 180

Query: 181 FHFILPFIIAALAALHLLFLHETGSNNPLGITSHSDKITFHPYYTIKDALGLFLFLLSLM 240
           FHFILPFIIAALA LHLLFLHETGSNNPLGITSHSDKITFHPYYTIKDALGL LFLLSLM
Sbjct: 181 FHFILPFIIAALATLHLLFLHETGSNNPLGITSHSDKITFHPYYTIKDALGLLLFLLSLM 240

Query: 241 TLTLLSPDLLGDPDNYTLANPLNTPPHIKPEWYFLFAYTILRSVPNKLGGVLALLLSILI 300
           TLTL SPDLLGDPDNYTLANPLNTPPHIKPEWYFLFAYTILRSVPNKLGGVLALLLSILI
Sbjct: 241 TLTLFSPDLLGDPDNYTLANPLNTPPHIKPEWYFLFAYTILRSVPNKLGGVLALLLSILI 300

Query: 301 LAMIPILHVSKQQSMMFRPLSQSLYWLLAADLLILTWIGGQPVSYPFIIIGQVASVLYFT 360
           LAMIPILH+SKQQSMMFRPLSQSLYWLLAADLLILTWIGGQPVSYPF IIGQVASVLYFT
Sbjct: 301 LAMIPILHMSKQQSMMFRPLSQSLYWLLAADLLILTWIGGQPVSYPFTIIGQVASVLYFT 360

Query: 361 TILILMPTISLIENKMLK 378
           TILILMPTISLIENKMLK
Sbjct: 361 TILILMPTISLIENKMLK 378


>gi|50897292 olfactory receptor, family 8, subfamily D, member 2
           [Homo sapiens]
          Length = 311

 Score = 32.3 bits (72), Expect = 0.72
 Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 6/96 (6%)

Query: 286 NKLGGVLALLLSI-LILAMIPILHVSKQQSMMFRPLSQSLYWLLAADLLI--LTWIGGQP 342
           N L   LA+L+S   I + I  +H ++ QS  F   S  L   LA  +    +T++  +P
Sbjct: 206 NTLATTLAVLISYAFIFSSILGIHSTEGQSKAFGTCSSHL---LAVGIFFGSITFMYFKP 262

Query: 343 VSYPFIIIGQVASVLYFTTILILMPTISLIENKMLK 378
            S   +   +V+SV Y T I +L P I  + NK +K
Sbjct: 263 PSSTTMEKEKVSSVFYITIIPMLNPLIYSLRNKDVK 298


>gi|216548223 synaptic vesicle glycoprotein 2 [Homo sapiens]
          Length = 742

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 15/64 (23%), Positives = 32/64 (50%)

Query: 104 YGSFLYSKTWNIGIILLLATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVQW 163
           +G F ++  + +G+ L+   +    +G+VLP  +     +     +L  I Y+G  +  +
Sbjct: 161 HGRFQWTLYFVLGLALMADGVEVFVVGFVLPSAEKDMCLSDSNKGMLGLIVYLGMMVGAF 220

Query: 164 IWGG 167
           +WGG
Sbjct: 221 LWGG 224


>gi|213021148 SVOP-like isoform 1 [Homo sapiens]
          Length = 492

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 9/72 (12%)

Query: 116 GIILLLATMATAFMGYVLPWGQMSFW--GATVITNLLSA-IPYIGTDLVQWIWGGYSVDS 172
           G+I+    + T + GY+LP  Q+ FW  G+ +I  L S  IP IG     W W       
Sbjct: 157 GLIIKTEFLPTKYRGYMLPLSQV-FWLAGSLLIIGLASVIIPTIG-----WRWLIRVASI 210

Query: 173 PTLTRFFTFHFI 184
           P +     F FI
Sbjct: 211 PGIILIVAFKFI 222


>gi|51230656 olfactory receptor, family 8, subfamily I, member 2
           [Homo sapiens]
          Length = 310

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 7/92 (7%)

Query: 294 LLLSILILAMIPILHVSKQQSMMFRPLSQSLYWLLAADLLILTWIGG-------QPVSYP 346
           LL S+LI+ +  I+ +S    +      Q  +   A+ L+ +T   G       QP +  
Sbjct: 206 LLSSLLIITVTYIIIISAILRIQSAAGRQKAFSTCASHLMAVTIFYGSLIFTYLQPDNTS 265

Query: 347 FIIIGQVASVLYFTTILILMPTISLIENKMLK 378
            +   QVASV Y   I +L P I  + NK +K
Sbjct: 266 SLTQAQVASVFYTIVIPMLNPLIYSLRNKDVK 297


>gi|14424433 ATPase, class V, type 10A [Homo sapiens]
          Length = 1499

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 271  EWYFLFAYTILRSVPNKLGGVLALLLSILILAMIPILHVSKQQSMMFRPLSQSLYWLLAA 330
            +WY +F   +  S+P  + GVL   +   +L   P L+ S Q    +RP +   +W   A
Sbjct: 1120 QWYLIFFNLLFSSLPPLVTGVLDRDVPANVLLTNPQLYKSGQNMEEYRPRT---FWFNMA 1176

Query: 331  D 331
            D
Sbjct: 1177 D 1177


>gi|110431368 ectonucleoside triphosphate diphosphohydrolase 8
           isoform 1 [Homo sapiens]
          Length = 495

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 14/98 (14%)

Query: 80  RYLHANGASMFFICLFLHIGRGLY---YGSFLYSKT-------WNIGIILLLATMATAFM 129
           R+L    AS  +I   LH G G     + S  + K        W +G +L L  M  A  
Sbjct: 397 RWLRDYCASGLYILTLLHEGYGFSEETWPSLEFRKQAGGVDIGWTLGYMLNLTGMIPA-- 454

Query: 130 GYVLPWGQMSF--WGATVITNLLSAIPYIGTDLVQWIW 165
                W   S+  W A V+  +L+ +  +G  LVQ  W
Sbjct: 455 DAPAQWRAESYGVWVAKVVFMVLALVAVVGAALVQLFW 492


>gi|110431366 ectonucleoside triphosphate diphosphohydrolase 8
           isoform 2 [Homo sapiens]
          Length = 458

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 14/98 (14%)

Query: 80  RYLHANGASMFFICLFLHIGRGLY---YGSFLYSKT-------WNIGIILLLATMATAFM 129
           R+L    AS  +I   LH G G     + S  + K        W +G +L L  M  A  
Sbjct: 360 RWLRDYCASGLYILTLLHEGYGFSEETWPSLEFRKQAGGVDIGWTLGYMLNLTGMIPA-- 417

Query: 130 GYVLPWGQMSF--WGATVITNLLSAIPYIGTDLVQWIW 165
                W   S+  W A V+  +L+ +  +G  LVQ  W
Sbjct: 418 DAPAQWRAESYGVWVAKVVFMVLALVAVVGAALVQLFW 455


>gi|12965178 taste receptor, type 2, member 13 [Homo sapiens]
          Length = 303

 Score = 28.9 bits (63), Expect = 8.0
 Identities = 47/211 (22%), Positives = 78/211 (36%), Gaps = 22/211 (10%)

Query: 41  LILQITTGLFLAMHYSPDASTAFSSIAHITRDVNYGWII-RYLHANGASMFFICLFLHIG 99
           LI +I    FLA+HY      A        R + + WI+  + +   A++F I   L I 
Sbjct: 58  LIWEILVSWFLALHY-----LAIFVSGTGLRIMIFSWIVSNHFNLWLATIFSIFYLLKIA 112

Query: 100 RGLYYGSFLYSKTWNIG---IILLLATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYI 156
                 +FLY K W +    +++LL T+   F+  +     +  W             Y 
Sbjct: 113 -SFSSPAFLYLK-WRVNKVILMILLGTLVFLFLNLIQINMHIKDW----------LDRYE 160

Query: 157 GTDLVQWIWGGYSVDSPTLTRFFTFHFILPFIIAALAALHLLF-LHETGSNNPLGITSHS 215
                 +    +   S ++    T   + PF +A ++ L L+F L +      L    H 
Sbjct: 161 RNTTWNFSMSDFETFSVSVKFTMTMFSLTPFTVAFISFLLLIFSLQKHLQKMQLNYKGHR 220

Query: 216 DKITFHPYYTIKDALGLFLFLLSLMTLTLLS 246
           D  T      +K  +   LF  S     L+S
Sbjct: 221 DPRTKVHTNALKIVISFLLFYASFFLCVLIS 251


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.329    0.143    0.458 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,601,847
Number of Sequences: 37866
Number of extensions: 569662
Number of successful extensions: 1558
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1553
Number of HSP's gapped (non-prelim): 12
length of query: 378
length of database: 18,247,518
effective HSP length: 104
effective length of query: 274
effective length of database: 14,309,454
effective search space: 3920790396
effective search space used: 3920790396
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.