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Search of human proteins with 194018508
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|194018508 hypothetical protein LOC152078 isoform 1 [Homo
sapiens]
(135 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|194018508 hypothetical protein LOC152078 isoform 1 [Homo sapi... 279 4e-76
gi|153791811 hypothetical protein LOC152078 isoform 3 [Homo sapi... 207 2e-54
gi|194018506 hypothetical protein LOC152078 isoform 2 [Homo sapi... 152 1e-37
gi|92110021 PQ loop repeat containing 2 isoform 1 [Homo sapiens] 68 2e-12
gi|92110025 PQ loop repeat containing 2 isoform 1 [Homo sapiens] 68 2e-12
gi|92110023 PQ loop repeat containing 2 isoform 2 [Homo sapiens] 60 7e-10
gi|110611243 neurotensin receptor 1 [Homo sapiens] 26 8.6
gi|22749005 family with sequence similarity 187, member B [Homo ... 26 8.6
gi|16306574 F-box and leucine-rich repeat protein 5 isoform 2 [H... 26 8.6
gi|16306572 F-box and leucine-rich repeat protein 5 isoform 1 [H... 26 8.6
>gi|194018508 hypothetical protein LOC152078 isoform 1 [Homo
sapiens]
Length = 135
Score = 279 bits (714), Expect = 4e-76
Identities = 135/135 (100%), Positives = 135/135 (100%)
Query: 1 MKVVGNYRVNTANSSTDTSGEHLTCLRSQLFVAYRNGRVDEAVSLGFLDCWIGGDLTNFK 60
MKVVGNYRVNTANSSTDTSGEHLTCLRSQLFVAYRNGRVDEAVSLGFLDCWIGGDLTNFK
Sbjct: 1 MKVVGNYRVNTANSSTDTSGEHLTCLRSQLFVAYRNGRVDEAVSLGFLDCWIGGDLTNFK 60
Query: 61 GCYLTNQLPIQIFTAIFDMNTDVIILSQFMYYRLKNQKKKMIFQPQLFKDSITREKVRLS 120
GCYLTNQLPIQIFTAIFDMNTDVIILSQFMYYRLKNQKKKMIFQPQLFKDSITREKVRLS
Sbjct: 61 GCYLTNQLPIQIFTAIFDMNTDVIILSQFMYYRLKNQKKKMIFQPQLFKDSITREKVRLS 120
Query: 121 LWGVLCPVYIPYSFR 135
LWGVLCPVYIPYSFR
Sbjct: 121 LWGVLCPVYIPYSFR 135
>gi|153791811 hypothetical protein LOC152078 isoform 3 [Homo
sapiens]
Length = 118
Score = 207 bits (528), Expect = 2e-54
Identities = 100/101 (99%), Positives = 101/101 (100%)
Query: 1 MKVVGNYRVNTANSSTDTSGEHLTCLRSQLFVAYRNGRVDEAVSLGFLDCWIGGDLTNFK 60
MKVVGNYRVNTANSSTDTSGEHLTCLRSQLFVAYRNGRVDEAVSLGFLDCWIGGDLTNFK
Sbjct: 1 MKVVGNYRVNTANSSTDTSGEHLTCLRSQLFVAYRNGRVDEAVSLGFLDCWIGGDLTNFK 60
Query: 61 GCYLTNQLPIQIFTAIFDMNTDVIILSQFMYYRLKNQKKKM 101
GCYLTNQLPIQIFTAIFDMNTDVIILSQFMYYRLKNQKKK+
Sbjct: 61 GCYLTNQLPIQIFTAIFDMNTDVIILSQFMYYRLKNQKKKI 101
>gi|194018506 hypothetical protein LOC152078 isoform 2 [Homo
sapiens]
Length = 133
Score = 152 bits (383), Expect = 1e-37
Identities = 79/102 (77%), Positives = 83/102 (81%), Gaps = 13/102 (12%)
Query: 1 MKVVGNYRVNTANSSTDTSGEHLTCLRSQLFVAYRNGRVDEAVSLGFLDCWIGGDLTNFK 60
MKVVGNYRVNTANSSTDTSGEHLTCLRSQLFVAYRNGRVDEAVSLGFLDCWIGGDLTNFK
Sbjct: 1 MKVVGNYRVNTANSSTDTSGEHLTCLRSQLFVAYRNGRVDEAVSLGFLDCWIGGDLTNFK 60
Query: 61 GCYLTNQLPIQIFTAIFDMNTDVIILSQFMYYRLKNQKKKMI 102
GCYLTNQLPIQ D+ T VI RL +Q++ I
Sbjct: 61 GCYLTNQLPIQ------DIPTSVI-------QRLHHQRESQI 89
>gi|92110021 PQ loop repeat containing 2 isoform 1 [Homo sapiens]
Length = 291
Score = 68.2 bits (165), Expect = 2e-12
Identities = 36/98 (36%), Positives = 56/98 (57%), Gaps = 9/98 (9%)
Query: 29 QLFVAYRNGRVDEAVSLGFLDCWIGGDLTNFKGCYLTNQLPIQIFTAIFDMNTDVIILSQ 88
Q AY+ G +D+A+SL FL WIGGD N G +L +QLP+Q +TA++ + D+++L+
Sbjct: 56 QFIKAYKTGNMDQALSLWFLLGWIGGDSCNLIGSFLADQLPLQTYTAVYYVLADLVMLTL 115
Query: 89 FMYYRLKNQKKKMIFQPQLFKDSITREKVRLSLWGVLC 126
+ YY+ + +P L I V L L G+ C
Sbjct: 116 YFYYKFRT-------RPSLLSAPI--NSVLLFLMGMAC 144
>gi|92110025 PQ loop repeat containing 2 isoform 1 [Homo sapiens]
Length = 291
Score = 68.2 bits (165), Expect = 2e-12
Identities = 36/98 (36%), Positives = 56/98 (57%), Gaps = 9/98 (9%)
Query: 29 QLFVAYRNGRVDEAVSLGFLDCWIGGDLTNFKGCYLTNQLPIQIFTAIFDMNTDVIILSQ 88
Q AY+ G +D+A+SL FL WIGGD N G +L +QLP+Q +TA++ + D+++L+
Sbjct: 56 QFIKAYKTGNMDQALSLWFLLGWIGGDSCNLIGSFLADQLPLQTYTAVYYVLADLVMLTL 115
Query: 89 FMYYRLKNQKKKMIFQPQLFKDSITREKVRLSLWGVLC 126
+ YY+ + +P L I V L L G+ C
Sbjct: 116 YFYYKFRT-------RPSLLSAPI--NSVLLFLMGMAC 144
>gi|92110023 PQ loop repeat containing 2 isoform 2 [Homo sapiens]
Length = 226
Score = 59.7 bits (143), Expect = 7e-10
Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 9/88 (10%)
Query: 39 VDEAVSLGFLDCWIGGDLTNFKGCYLTNQLPIQIFTAIFDMNTDVIILSQFMYYRLKNQK 98
+D+A+SL FL WIGGD N G +L +QLP+Q +TA++ + D+++L+ + YY+ +
Sbjct: 1 MDQALSLWFLLGWIGGDSCNLIGSFLADQLPLQTYTAVYYVLADLVMLTLYFYYKFRT-- 58
Query: 99 KKMIFQPQLFKDSITREKVRLSLWGVLC 126
+P L I V L L G+ C
Sbjct: 59 -----RPSLLSAPI--NSVLLFLMGMAC 79
>gi|110611243 neurotensin receptor 1 [Homo sapiens]
Length = 418
Score = 26.2 bits (56), Expect = 8.6
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 20 GEHLT---CLRSQLFVAYRNG-RVDEAVSLGFLDCWIGGDLTNFKGCYLTNQ 67
GEH T + A R+G RV AV + F+ CW+ + CY++++
Sbjct: 281 GEHSTFSMAIEPGRVQALRHGVRVLRAVVIAFVVCWLPYHVRRLMFCYISDE 332
>gi|22749005 family with sequence similarity 187, member B [Homo
sapiens]
Length = 369
Score = 26.2 bits (56), Expect = 8.6
Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 20/93 (21%)
Query: 31 FVAYRNGRVDEAVSLGFLDCWIGGDL------TNFKGCYLTNQLPIQIFTAIFDMNTDVI 84
+V + N R+DE +LDC +G N +QL Q FT D +T
Sbjct: 215 YVIFDNFRLDEKTEFVWLDCPLGSMYRPVNWRANDTPLTWESQLSGQDFTTFLDPST--- 271
Query: 85 ILSQFMYYRLKNQKKKMIFQPQLFKDSITREKV 117
++ +FQP ++K + +E V
Sbjct: 272 -----------GGRQLQVFQPAVYKCFVQQELV 293
>gi|16306574 F-box and leucine-rich repeat protein 5 isoform 2 [Homo
sapiens]
Length = 565
Score = 26.2 bits (56), Expect = 8.6
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 84 IILSQFMYYRLKNQKKKMIFQPQLFKDSITREKVR-LSLW 122
+++ F Y LK+ KKK+I Q KD T E +R LSLW
Sbjct: 11 MLMEYFTYEELKDIKKKVIAQHCSQKD--TAELLRGLSLW 48
>gi|16306572 F-box and leucine-rich repeat protein 5 isoform 1 [Homo
sapiens]
Length = 691
Score = 26.2 bits (56), Expect = 8.6
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 84 IILSQFMYYRLKNQKKKMIFQPQLFKDSITREKVR-LSLW 122
+++ F Y LK+ KKK+I Q KD T E +R LSLW
Sbjct: 137 MLMEYFTYEELKDIKKKVIAQHCSQKD--TAELLRGLSLW 174
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.327 0.140 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,479,354
Number of Sequences: 37866
Number of extensions: 158831
Number of successful extensions: 352
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 346
Number of HSP's gapped (non-prelim): 10
length of query: 135
length of database: 18,247,518
effective HSP length: 91
effective length of query: 44
effective length of database: 14,801,712
effective search space: 651275328
effective search space used: 651275328
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.