Search of human proteins with 194018506

Search of human proteins with 194018506

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|194018506 hypothetical protein LOC152078 isoform 2 [Homo
sapiens]
         (133 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|194018506 hypothetical protein LOC152078 isoform 2 [Homo sapi...   278   9e-76
gi|194018508 hypothetical protein LOC152078 isoform 1 [Homo sapi...   152   1e-37
gi|153791811 hypothetical protein LOC152078 isoform 3 [Homo sapi...   151   2e-37
gi|92110021 PQ loop repeat containing 2 isoform 1 [Homo sapiens]       49   2e-06
gi|92110025 PQ loop repeat containing 2 isoform 1 [Homo sapiens]       49   2e-06
gi|92110023 PQ loop repeat containing 2 isoform 2 [Homo sapiens]       40   5e-04
gi|110611243 neurotensin receptor 1 [Homo sapiens]                     26   8.2  

>gi|194018506 hypothetical protein LOC152078 isoform 2 [Homo
           sapiens]
          Length = 133

 Score =  278 bits (711), Expect = 9e-76
 Identities = 133/133 (100%), Positives = 133/133 (100%)

Query: 1   MKVVGNYRVNTANSSTDTSGEHLTCLRSQLFVAYRNGRVDEAVSLGFLDCWIGGDLTNFK 60
           MKVVGNYRVNTANSSTDTSGEHLTCLRSQLFVAYRNGRVDEAVSLGFLDCWIGGDLTNFK
Sbjct: 1   MKVVGNYRVNTANSSTDTSGEHLTCLRSQLFVAYRNGRVDEAVSLGFLDCWIGGDLTNFK 60

Query: 61  GCYLTNQLPIQDIPTSVIQRLHHQRESQIVTLGSPLPCIYPIFFQISEISMPGYYSCLCH 120
           GCYLTNQLPIQDIPTSVIQRLHHQRESQIVTLGSPLPCIYPIFFQISEISMPGYYSCLCH
Sbjct: 61  GCYLTNQLPIQDIPTSVIQRLHHQRESQIVTLGSPLPCIYPIFFQISEISMPGYYSCLCH 120

Query: 121 TTINTSKRRFILT 133
           TTINTSKRRFILT
Sbjct: 121 TTINTSKRRFILT 133


>gi|194018508 hypothetical protein LOC152078 isoform 1 [Homo
           sapiens]
          Length = 135

 Score =  152 bits (383), Expect = 1e-37
 Identities = 79/102 (77%), Positives = 83/102 (81%), Gaps = 13/102 (12%)

Query: 1   MKVVGNYRVNTANSSTDTSGEHLTCLRSQLFVAYRNGRVDEAVSLGFLDCWIGGDLTNFK 60
           MKVVGNYRVNTANSSTDTSGEHLTCLRSQLFVAYRNGRVDEAVSLGFLDCWIGGDLTNFK
Sbjct: 1   MKVVGNYRVNTANSSTDTSGEHLTCLRSQLFVAYRNGRVDEAVSLGFLDCWIGGDLTNFK 60

Query: 61  GCYLTNQLPIQ------DIPTSVI-------QRLHHQRESQI 89
           GCYLTNQLPIQ      D+ T VI        RL +Q++  I
Sbjct: 61  GCYLTNQLPIQIFTAIFDMNTDVIILSQFMYYRLKNQKKKMI 102


>gi|153791811 hypothetical protein LOC152078 isoform 3 [Homo
          sapiens]
          Length = 118

 Score =  151 bits (381), Expect = 2e-37
 Identities = 75/84 (89%), Positives = 76/84 (90%), Gaps = 6/84 (7%)

Query: 1  MKVVGNYRVNTANSSTDTSGEHLTCLRSQLFVAYRNGRVDEAVSLGFLDCWIGGDLTNFK 60
          MKVVGNYRVNTANSSTDTSGEHLTCLRSQLFVAYRNGRVDEAVSLGFLDCWIGGDLTNFK
Sbjct: 1  MKVVGNYRVNTANSSTDTSGEHLTCLRSQLFVAYRNGRVDEAVSLGFLDCWIGGDLTNFK 60

Query: 61 GCYLTNQLPIQ------DIPTSVI 78
          GCYLTNQLPIQ      D+ T VI
Sbjct: 61 GCYLTNQLPIQIFTAIFDMNTDVI 84


>gi|92110021 PQ loop repeat containing 2 isoform 1 [Homo sapiens]
          Length = 291

 Score = 48.5 bits (114), Expect = 2e-06
 Identities = 22/43 (51%), Positives = 29/43 (67%)

Query: 29 QLFVAYRNGRVDEAVSLGFLDCWIGGDLTNFKGCYLTNQLPIQ 71
          Q   AY+ G +D+A+SL FL  WIGGD  N  G +L +QLP+Q
Sbjct: 56 QFIKAYKTGNMDQALSLWFLLGWIGGDSCNLIGSFLADQLPLQ 98


>gi|92110025 PQ loop repeat containing 2 isoform 1 [Homo sapiens]
          Length = 291

 Score = 48.5 bits (114), Expect = 2e-06
 Identities = 22/43 (51%), Positives = 29/43 (67%)

Query: 29 QLFVAYRNGRVDEAVSLGFLDCWIGGDLTNFKGCYLTNQLPIQ 71
          Q   AY+ G +D+A+SL FL  WIGGD  N  G +L +QLP+Q
Sbjct: 56 QFIKAYKTGNMDQALSLWFLLGWIGGDSCNLIGSFLADQLPLQ 98


>gi|92110023 PQ loop repeat containing 2 isoform 2 [Homo sapiens]
          Length = 226

 Score = 40.0 bits (92), Expect = 5e-04
 Identities = 18/33 (54%), Positives = 24/33 (72%)

Query: 39 VDEAVSLGFLDCWIGGDLTNFKGCYLTNQLPIQ 71
          +D+A+SL FL  WIGGD  N  G +L +QLP+Q
Sbjct: 1  MDQALSLWFLLGWIGGDSCNLIGSFLADQLPLQ 33


>gi|110611243 neurotensin receptor 1 [Homo sapiens]
          Length = 418

 Score = 26.2 bits (56), Expect = 8.2
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 4/52 (7%)

Query: 20  GEHLT---CLRSQLFVAYRNG-RVDEAVSLGFLDCWIGGDLTNFKGCYLTNQ 67
           GEH T    +      A R+G RV  AV + F+ CW+   +     CY++++
Sbjct: 281 GEHSTFSMAIEPGRVQALRHGVRVLRAVVIAFVVCWLPYHVRRLMFCYISDE 332


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.324    0.138    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,916,476
Number of Sequences: 37866
Number of extensions: 191558
Number of successful extensions: 413
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 407
Number of HSP's gapped (non-prelim): 7
length of query: 133
length of database: 18,247,518
effective HSP length: 91
effective length of query: 42
effective length of database: 14,801,712
effective search space: 621671904
effective search space used: 621671904
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.