Search of human proteins with 189181759

Search of human proteins with 189181759

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|189181759 electron transfer flavoprotein, alpha polypeptide
isoform b [Homo sapiens]
         (284 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|189181759 electron transfer flavoprotein, alpha polypeptide i...   551   e-157
gi|4503607 electron transfer flavoprotein, alpha polypeptide iso...   528   e-150
gi|239754110 PREDICTED: hypothetical protein XP_002345881 [Homo ...    30   3.1  
gi|239748639 PREDICTED: hypothetical protein XP_002346752 [Homo ...    30   3.1  
gi|150170699 kinesin family member 26A [Homo sapiens]                  30   3.1  
gi|239751471 PREDICTED: hypothetical protein XP_002347846 [Homo ...    29   5.4  
gi|239755008 PREDICTED: hypothetical protein [Homo sapiens]            28   7.0  
gi|71274144 AT hook, DNA binding motif, containing 1 [Homo sapiens]    28   9.1  

>gi|189181759 electron transfer flavoprotein, alpha polypeptide
           isoform b [Homo sapiens]
          Length = 284

 Score =  551 bits (1419), Expect = e-157
 Identities = 284/284 (100%), Positives = 284/284 (100%)

Query: 1   MFRAAAPGQLRRAVAQDLCKVAGIAKVLVAQHDVYKGLLPEELTPLILATQKQFNYTHIC 60
           MFRAAAPGQLRRAVAQDLCKVAGIAKVLVAQHDVYKGLLPEELTPLILATQKQFNYTHIC
Sbjct: 1   MFRAAAPGQLRRAVAQDLCKVAGIAKVLVAQHDVYKGLLPEELTPLILATQKQFNYTHIC 60

Query: 61  AGASAFGKNLLPRVAAKLEVAPISDIIAIKSPDTFVRTIYAGNALCTVKCDEKVKVFSVR 120
           AGASAFGKNLLPRVAAKLEVAPISDIIAIKSPDTFVRTIYAGNALCTVKCDEKVKVFSVR
Sbjct: 61  AGASAFGKNLLPRVAAKLEVAPISDIIAIKSPDTFVRTIYAGNALCTVKCDEKVKVFSVR 120

Query: 121 GTSFDAAATSGGSASSEKASSTSPVEISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGE 180
           GTSFDAAATSGGSASSEKASSTSPVEISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGE
Sbjct: 121 GTSFDAAATSGGSASSEKASSTSPVEISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGE 180

Query: 181 NFKLLYDLADQLHAAVGASRAAVDAGFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAG 240
           NFKLLYDLADQLHAAVGASRAAVDAGFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAG
Sbjct: 181 NFKLLYDLADQLHAAVGASRAAVDAGFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAG 240

Query: 241 MKDSKTIVAINKDPEAPIFQVADYGIVADLFKVVPEMTEILKKK 284
           MKDSKTIVAINKDPEAPIFQVADYGIVADLFKVVPEMTEILKKK
Sbjct: 241 MKDSKTIVAINKDPEAPIFQVADYGIVADLFKVVPEMTEILKKK 284


>gi|4503607 electron transfer flavoprotein, alpha polypeptide
           isoform a [Homo sapiens]
          Length = 333

 Score =  528 bits (1359), Expect = e-150
 Identities = 284/333 (85%), Positives = 284/333 (85%), Gaps = 49/333 (14%)

Query: 1   MFRAAAPGQLRRA----------------------------------------------- 13
           MFRAAAPGQLRRA                                               
Sbjct: 1   MFRAAAPGQLRRAASLLRFQSTLVIAEHANDSLAPITLNTITAATRLGGEVSCLVAGTKC 60

Query: 14  --VAQDLCKVAGIAKVLVAQHDVYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLL 71
             VAQDLCKVAGIAKVLVAQHDVYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLL
Sbjct: 61  DKVAQDLCKVAGIAKVLVAQHDVYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLL 120

Query: 72  PRVAAKLEVAPISDIIAIKSPDTFVRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAATSG 131
           PRVAAKLEVAPISDIIAIKSPDTFVRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAATSG
Sbjct: 121 PRVAAKLEVAPISDIIAIKSPDTFVRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAATSG 180

Query: 132 GSASSEKASSTSPVEISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQ 191
           GSASSEKASSTSPVEISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQ
Sbjct: 181 GSASSEKASSTSPVEISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQ 240

Query: 192 LHAAVGASRAAVDAGFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAIN 251
           LHAAVGASRAAVDAGFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAIN
Sbjct: 241 LHAAVGASRAAVDAGFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAIN 300

Query: 252 KDPEAPIFQVADYGIVADLFKVVPEMTEILKKK 284
           KDPEAPIFQVADYGIVADLFKVVPEMTEILKKK
Sbjct: 301 KDPEAPIFQVADYGIVADLFKVVPEMTEILKKK 333


>gi|239754110 PREDICTED: hypothetical protein XP_002345881 [Homo
           sapiens]
          Length = 284

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 12/73 (16%)

Query: 4   AAAPGQLRRAVAQDLCKVAGIAKVLVAQHDVYKGLLPEELTPLILATQKQFNYTHICAGA 63
           A AP    RA    L  V G+A VLV + D++  L  + +  L            +CA A
Sbjct: 89  APAPAPRERARGLRLRTVVGVAGVLVERDDLHALLAIQVIVQL------------LCAAA 136

Query: 64  SAFGKNLLPRVAA 76
            A G   LP  AA
Sbjct: 137 EARGAATLPAAAA 149


>gi|239748639 PREDICTED: hypothetical protein XP_002346752 [Homo
           sapiens]
          Length = 286

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 12/73 (16%)

Query: 4   AAAPGQLRRAVAQDLCKVAGIAKVLVAQHDVYKGLLPEELTPLILATQKQFNYTHICAGA 63
           A AP    RA    L  V G+A VLV + D++  L  + +  L            +CA A
Sbjct: 89  APAPAPRERARGLRLRTVVGVAGVLVERDDLHALLAIQVIVQL------------LCAAA 136

Query: 64  SAFGKNLLPRVAA 76
            A G   LP  AA
Sbjct: 137 EARGAATLPAAAA 149


>gi|150170699 kinesin family member 26A [Homo sapiens]
          Length = 1882

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 121 GTSFDAAATSGGSASSEKASSTSPVEISEWLDQKLTKSDRPE-LTGAKVVVSGGR 174
           GT   A+   G S       +  P +   W DQ+   S  PE L   K  VSGGR
Sbjct: 891 GTPMAASTPRGSSGPDTHQGTPEPCKAIVWGDQREDSSAWPELLVPEKAAVSGGR 945


>gi|239751471 PREDICTED: hypothetical protein XP_002347846 [Homo
           sapiens]
          Length = 870

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 15/47 (31%), Positives = 21/47 (44%)

Query: 171 SGGRGLKSGENFKLLYDLADQLHAAVGASRAAVDAGFVPNDMQVGQT 217
           +GG G ++        DLA  L   +G     +D GF P D   GQ+
Sbjct: 38  AGGEGGRAQPGLPCSVDLATGLEGPLGGPAVDLDVGFSPGDDIAGQS 84


>gi|239755008 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 253

 Score = 28.5 bits (62), Expect = 7.0
 Identities = 28/83 (33%), Positives = 37/83 (44%), Gaps = 18/83 (21%)

Query: 192 LHAAVGASRAAVDAGFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTI---V 248
           LHA   A R  VD              K V PE     G++ A +H+AG+ +   I   V
Sbjct: 68  LHALAEARRVVVD--------------KRVHPERDAEAGVAQAAEHVAGVGEFDLIEVEV 113

Query: 249 AINKDPEAPIFQVADYGIV-ADL 270
           AI++      FQVA   +V ADL
Sbjct: 114 AISRCVHVVDFQVAAVEVVQADL 136


>gi|71274144 AT hook, DNA binding motif, containing 1 [Homo sapiens]
          Length = 1603

 Score = 28.1 bits (61), Expect = 9.1
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%)

Query: 100  YAGNALCTVKCDEKVKVFSVRG----TSFDAAATSGGSASSEKASSTSP 144
            ++G+A   ++CD +    S  G        A+ATS  SA+S  +SS  P
Sbjct: 1046 FSGSAPTPLRCDSRASTVSPGGYMVPKGTTASATSAASAASSSSSSFQP 1094


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.133    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,712,019
Number of Sequences: 37866
Number of extensions: 382413
Number of successful extensions: 1009
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1005
Number of HSP's gapped (non-prelim): 9
length of query: 284
length of database: 18,247,518
effective HSP length: 101
effective length of query: 183
effective length of database: 14,423,052
effective search space: 2639418516
effective search space used: 2639418516
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.