Search of human proteins with 188528611

Search of human proteins with 188528611

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|188528611 transmembrane 4 L six family member 20 [Homo
sapiens]
         (229 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|188528611 transmembrane 4 L six family member 20 [Homo sapiens]    471   e-133
gi|21265101 transmembrane 4 superfamily member 1 [Homo sapiens]        60   2e-09
gi|21265113 transmembrane 4 superfamily member 5 [Homo sapiens]        59   3e-09
gi|4759240 transmembrane 4 superfamily member 4 [Homo sapiens]         55   5e-08
gi|20270327 transmembrane 4 L six family member 18 [Homo sapiens]      48   6e-06
gi|115511028 transmembrane 4 L six family member 19 [Homo sapiens]     40   0.002
gi|153946395 tenascin C precursor [Homo sapiens]                       32   0.45 
gi|169163270 PREDICTED: similar to hCG2043206 [Homo sapiens]           31   0.77 
gi|4757886 pituitary tumor-transforming gene 1 protein-interacti...    28   6.5  
gi|52218852 olfactory receptor, family 10, subfamily K, member 1...    28   8.5  

>gi|188528611 transmembrane 4 L six family member 20 [Homo sapiens]
          Length = 229

 Score =  471 bits (1213), Expect = e-133
 Identities = 229/229 (100%), Positives = 229/229 (100%)

Query: 1   MTCCEGWTSCNGFSLLVLLLLGVVLNAIPLIVSLVEEDQFSQNPISCFEWWFPGIIGAGL 60
           MTCCEGWTSCNGFSLLVLLLLGVVLNAIPLIVSLVEEDQFSQNPISCFEWWFPGIIGAGL
Sbjct: 1   MTCCEGWTSCNGFSLLVLLLLGVVLNAIPLIVSLVEEDQFSQNPISCFEWWFPGIIGAGL 60

Query: 61  MAIPATTMSLTARKRACCNNRTGMFLSSLFSVITVIGALYCMLISIQALLKGPLMCNSPS 120
           MAIPATTMSLTARKRACCNNRTGMFLSSLFSVITVIGALYCMLISIQALLKGPLMCNSPS
Sbjct: 61  MAIPATTMSLTARKRACCNNRTGMFLSSLFSVITVIGALYCMLISIQALLKGPLMCNSPS 120

Query: 121 NSNANCEFSLKNISDIHPESFNLQWFFNDSCAPPTGFNKPTSNDTMASGWRASSFHFDSE 180
           NSNANCEFSLKNISDIHPESFNLQWFFNDSCAPPTGFNKPTSNDTMASGWRASSFHFDSE
Sbjct: 121 NSNANCEFSLKNISDIHPESFNLQWFFNDSCAPPTGFNKPTSNDTMASGWRASSFHFDSE 180

Query: 181 ENKHRLIHFSVFLGLLLVGILEVLFGLSQIVIGFLGCLCGVSKRRSQIV 229
           ENKHRLIHFSVFLGLLLVGILEVLFGLSQIVIGFLGCLCGVSKRRSQIV
Sbjct: 181 ENKHRLIHFSVFLGLLLVGILEVLFGLSQIVIGFLGCLCGVSKRRSQIV 229


>gi|21265101 transmembrane 4 superfamily member 1 [Homo sapiens]
          Length = 202

 Score = 60.1 bits (144), Expect = 2e-09
 Identities = 60/220 (27%), Positives = 91/220 (41%), Gaps = 46/220 (20%)

Query: 10  CNGFSLLVLLLLGVVLNAIPLIVSLVEEDQFSQNPISCFEWWFPGIIGAG-LMAIPATTM 68
           C G SL+ L LL +  N + L     E    S+N +S F W+F GI+G G LM +PA   
Sbjct: 9   CIGHSLVGLALLCIAANIL-LYFPNGETKYASENHLSRFVWFFSGIVGGGLLMLLPAFVF 67

Query: 69  SLTARKRAC-------CNNRTGMFLSSLFSVITVIGALYCMLISIQALLKGPLMCNSPSN 121
               +   C       C  R  M  S L ++I + G+ YC++++   L +GPL  +S   
Sbjct: 68  IGLEQDDCCGCCGHENCGKRCAMLSSVLAALIGIAGSGYCVIVAALGLAEGPLCLDSLG- 126

Query: 122 SNANCEFSLKNISDIHPESFNLQWFFNDSCAPPTGFNKPTSNDTMASGWRASSFHFDSEE 181
                                 QW +             T   T       +S   +  E
Sbjct: 127 ----------------------QWNY-------------TFASTEGQYLLDTSTWSECTE 151

Query: 182 NKHRL-IHFSVFLGLLLVGILEVLFGLSQIVIGFLGCLCG 220
            KH +  + S+F  LL +G +E +  L Q++ G LG +CG
Sbjct: 152 PKHIVEWNVSLFSILLALGGIEFILCLIQVINGVLGGICG 191


>gi|21265113 transmembrane 4 superfamily member 5 [Homo sapiens]
          Length = 197

 Score = 59.3 bits (142), Expect = 3e-09
 Identities = 39/116 (33%), Positives = 54/116 (46%), Gaps = 6/116 (5%)

Query: 3   CCEGWTSCNGFSLLVLLLLGVVLNAIPLIVSLVEEDQFSQNPISCFEWWFPGIIGAGLMA 62
           C      C G SL+ L L+ +V NA+ L+V   E    + N +S   W   G IG GLM 
Sbjct: 2   CTGKCARCVGLSLITLCLVCIVANAL-LLVPNGETSWTNTNHLSLQVWLMGGFIGGGLMV 60

Query: 63  IPATTMSLTARKRACCN-----NRTGMFLSSLFSVITVIGALYCMLISIQALLKGP 113
           +     ++ A  + CC      NR  M  S   S   V+GA+YC+ +S   L  GP
Sbjct: 61  LCPGIAAVRAGGKGCCGAGCCGNRCRMLRSVFSSAFGVLGAIYCLSVSGAGLRNGP 116


>gi|4759240 transmembrane 4 superfamily member 4 [Homo sapiens]
          Length = 202

 Score = 55.1 bits (131), Expect = 5e-08
 Identities = 39/129 (30%), Positives = 60/129 (46%), Gaps = 18/129 (13%)

Query: 3   CCEGWTSCNGFSLLVLLLLGVVLNAIPLIVS---LVEEDQFSQNPISCFEWWFPGIIGAG 59
           C  G   C G +L+ L   G + N +        + + D  SQ       W+F GI+G+G
Sbjct: 2   CTGGCARCLGGTLIPLAFFGFLANILLFFPGGKVIDDNDHLSQEI-----WFFGGILGSG 56

Query: 60  LMAIPATTMSLTARKRACCN--------NRTGMFLSSLFSVITVIGALYCMLISIQALLK 111
           ++ I    + L  +   CC          R  MF S++F+V+  +GA Y  +IS  ++ K
Sbjct: 57  VLMIFPALVFLGLKNNDCCGCCGNEGCGKRFAMFTSTIFAVVGFLGAGYSFIISAISINK 116

Query: 112 GP--LMCNS 118
           GP  LM NS
Sbjct: 117 GPKCLMANS 125


>gi|20270327 transmembrane 4 L six family member 18 [Homo sapiens]
          Length = 201

 Score = 48.1 bits (113), Expect = 6e-06
 Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 12/118 (10%)

Query: 4   CEGWTSCNGFSLLVLLLLGVVLNAIPLIVSLVEEDQFSQNPISCFEWWFPGIIGAGLMAI 63
           C G  SC    LL+ L L  ++  I L     +    S N ++ + W+F GI  +G+M +
Sbjct: 6   CGGCLSC----LLIPLALWSIIVNILLYFPNGQTSYASSNKLTNYVWYFEGICFSGIMML 61

Query: 64  PATTMSLTARK----RAC----CNNRTGMFLSSLFSVITVIGALYCMLISIQALLKGP 113
             TT+ L        + C    C+ +    LS +FS + +  + YC++IS   L++GP
Sbjct: 62  IVTTVLLVLENNNNYKCCQSENCSKKYVTLLSIIFSSLGIAFSGYCLVISALGLVQGP 119


>gi|115511028 transmembrane 4 L six family member 19 [Homo sapiens]
          Length = 209

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 39/177 (22%), Positives = 72/177 (40%), Gaps = 33/177 (18%)

Query: 54  GIIGAGLMAIPATTMSLTARKRACCNNRTGMFLSSLFSVIT----VIGALYCMLISIQAL 109
           G+ G GLM + A  +      R  C +++G+  S L ++++    ++GAL C + S  AL
Sbjct: 60  GLWGGGLMVLTAAILISLMGWRYGCFSKSGLCRSVLTALLSGGLALLGALICFVTSGVAL 119

Query: 110 LKGPLMCNSPSNSNANCEFSL-KNISDIHPESFNL-QWFFNDSCAPPTGFNKPTSNDTMA 167
             GP      S+ N    +       D+H  ++   +  +N  C  P+           A
Sbjct: 120 KDGPFCMFDVSSFNQTQAWKYGYPFKDLHSRNYLYDRSLWNSVCLEPSA----------A 169

Query: 168 SGWRASSFHFDSEENKHRLIHFSVFLGLLLVGILEVLFGLSQIVIGFLGCLCGVSKR 224
             W                 H S+F  LL + +L++L  +  ++   LG  C + ++
Sbjct: 170 VVW-----------------HVSLFSALLCISLLQLLLVVVHVINSLLGLFCSLCEK 209


>gi|153946395 tenascin C precursor [Homo sapiens]
          Length = 2201

 Score = 32.0 bits (71), Expect = 0.45
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 4/49 (8%)

Query: 104  ISIQALLKG---PLMCNSPSNSNANCEFSLKNISDIHPESFNLQWFFND 149
            +SI  +++G   P++    S +    E    N+SDI PESFNL W   D
Sbjct: 1415 VSIYGVIRGYRTPVLSAEASTAKEP-EIGNLNVSDITPESFNLSWMATD 1462


>gi|169163270 PREDICTED: similar to hCG2043206 [Homo sapiens]
          Length = 151

 Score = 31.2 bits (69), Expect = 0.77
 Identities = 31/119 (26%), Positives = 47/119 (39%), Gaps = 2/119 (1%)

Query: 51  WFPGIIGAGLMAIPATTMSLTARKRACCNNRTGMFLSSLF-SVITVIGALYCMLISIQAL 109
           W P   G  +M     T+SL+  +RA  + R    +SS + S           L+   A 
Sbjct: 14  WLPDTTGEIVMTQSPATLSLSPGERATLSCRASQSVSSSYLSWYQQKPGQAPRLLIYGAS 73

Query: 110 LKGPLMCNSPSNSNANCEFSLKNISDIHPESFNLQWFFNDSCAPPTGFNKPTSNDTMAS 168
            +   +    S S +  +F+L  IS + PE F + +   D   PPT     T   T  S
Sbjct: 74  TRATGIPARFSGSGSGTDFTL-TISSLQPEDFAVYYCQQDYNLPPTVIQHETKTSTRPS 131


>gi|4757886 pituitary tumor-transforming gene 1 protein-interacting
           protein precursor [Homo sapiens]
          Length = 180

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 16/106 (15%)

Query: 98  ALYCMLISIQALLKGPLMCNSPSNSNANCEFSLKNISDIHPESFNLQWFFNDSCA--PPT 155
           AL  +LI + A  + P    S  N+N  CE  LKN+S +   +       N +C   P T
Sbjct: 21  ALLLLLIPVAAAQEPPGAACS-QNTNKTCEECLKNVSCLWCNT-------NKACLDYPVT 72

Query: 156 GFNKPTSNDTMASG-WRASSFHFDSEENKHRLIHFSVFLGLLLVGI 200
               P S   ++S  W     +F++      +I  SV  G LL+GI
Sbjct: 73  SVLPPASLCKLSSARWGVCWVNFEA-----LIITMSVVGGTLLLGI 113


>gi|52218852 olfactory receptor, family 10, subfamily K, member 1
           [Homo sapiens]
          Length = 313

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 13/25 (52%), Positives = 18/25 (72%)

Query: 11  NGFSLLVLLLLGVVLNAIPLIVSLV 35
           +GFS LV+ +LGV    IPL++ LV
Sbjct: 192 SGFSQLVIFMLGVFALVIPLLLILV 216


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.326    0.139    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,611,861
Number of Sequences: 37866
Number of extensions: 360760
Number of successful extensions: 1049
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1031
Number of HSP's gapped (non-prelim): 15
length of query: 229
length of database: 18,247,518
effective HSP length: 99
effective length of query: 130
effective length of database: 14,498,784
effective search space: 1884841920
effective search space used: 1884841920
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.