Search of human proteins with 187761334

Search of human proteins with 187761334

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|187761334 hypothetical protein LOC57828 [Homo sapiens]
         (1159 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|187761334 hypothetical protein LOC57828 [Homo sapiens]            2382   0.0  
gi|193083122 translocase of outer mitochondrial membrane 40 [Hom...    32   4.6  
gi|193083120 translocase of outer mitochondrial membrane 40 [Hom...    32   4.6  
gi|5174723 translocase of outer mitochondrial membrane 40 [Homo ...    32   4.6  
gi|160707905 similar to solute carrier family 35, member E2 [Hom...    31   6.0  
gi|169234667 transmembrane protein 39B [Homo sapiens]                  31   6.0  

>gi|187761334 hypothetical protein LOC57828 [Homo sapiens]
          Length = 1159

 Score = 2382 bits (6174), Expect = 0.0
 Identities = 1159/1159 (100%), Positives = 1159/1159 (100%)

Query: 1    MCGPAMFPAGPPWPRVRVVQVLWALLAVLLASWRLWAIKDFQECTWQVVLNEFKRVGESG 60
            MCGPAMFPAGPPWPRVRVVQVLWALLAVLLASWRLWAIKDFQECTWQVVLNEFKRVGESG
Sbjct: 1    MCGPAMFPAGPPWPRVRVVQVLWALLAVLLASWRLWAIKDFQECTWQVVLNEFKRVGESG 60

Query: 61   VSDSFFEQEPVDTVSSLFHMLVDSPIDPSEKYLGFPYYLKINYSCEEKPSEDLVRMGHLT 120
            VSDSFFEQEPVDTVSSLFHMLVDSPIDPSEKYLGFPYYLKINYSCEEKPSEDLVRMGHLT
Sbjct: 61   VSDSFFEQEPVDTVSSLFHMLVDSPIDPSEKYLGFPYYLKINYSCEEKPSEDLVRMGHLT 120

Query: 121  GLKPLVLVTFQSPVNFYRWKIEQLQIQMEAAPFRSKEPCMAEEVCSMSWYTPMPIKKGSV 180
            GLKPLVLVTFQSPVNFYRWKIEQLQIQMEAAPFRSKEPCMAEEVCSMSWYTPMPIKKGSV
Sbjct: 121  GLKPLVLVTFQSPVNFYRWKIEQLQIQMEAAPFRSKEPCMAEEVCSMSWYTPMPIKKGSV 180

Query: 181  VMRVDISSNGLGTFIPDKRFQMNINGFLKRDRDNNIQFTVGEELFNLMPQYFVGVSSRPL 240
            VMRVDISSNGLGTFIPDKRFQMNINGFLKRDRDNNIQFTVGEELFNLMPQYFVGVSSRPL
Sbjct: 181  VMRVDISSNGLGTFIPDKRFQMNINGFLKRDRDNNIQFTVGEELFNLMPQYFVGVSSRPL 240

Query: 241  WHTVDQSPVLILGGIPNEKYVLMTDTSFKDFSLVELSIDSCWVGSFYCPHSGFTATIYDT 300
            WHTVDQSPVLILGGIPNEKYVLMTDTSFKDFSLVELSIDSCWVGSFYCPHSGFTATIYDT
Sbjct: 241  WHTVDQSPVLILGGIPNEKYVLMTDTSFKDFSLVELSIDSCWVGSFYCPHSGFTATIYDT 300

Query: 301  IATESTLFIRQNQLVYYFTGTYTTLYERNRGSGSWIRVLASECIKKLCPVYFHSNGSEYI 360
            IATESTLFIRQNQLVYYFTGTYTTLYERNRGSGSWIRVLASECIKKLCPVYFHSNGSEYI
Sbjct: 301  IATESTLFIRQNQLVYYFTGTYTTLYERNRGSGSWIRVLASECIKKLCPVYFHSNGSEYI 360

Query: 361  MALTTGKHEGYVHFGTIRDGQVSFEMLPRQWSVCEQIGVTTCSIIWSEYIAGEYTLLLLV 420
            MALTTGKHEGYVHFGTIRDGQVSFEMLPRQWSVCEQIGVTTCSIIWSEYIAGEYTLLLLV
Sbjct: 361  MALTTGKHEGYVHFGTIRDGQVSFEMLPRQWSVCEQIGVTTCSIIWSEYIAGEYTLLLLV 420

Query: 421  ESGYGNASKRFQVVSYNTASDDLELLYHIPEFIPEARGLEFLMILGTESYTSTAMAPKGI 480
            ESGYGNASKRFQVVSYNTASDDLELLYHIPEFIPEARGLEFLMILGTESYTSTAMAPKGI
Sbjct: 421  ESGYGNASKRFQVVSYNTASDDLELLYHIPEFIPEARGLEFLMILGTESYTSTAMAPKGI 480

Query: 481  FCNPYNNLIFIWGNFLLQSSNKENFIYLADFPKELSIKYMARSFRGAVAIVTETEEIWYL 540
            FCNPYNNLIFIWGNFLLQSSNKENFIYLADFPKELSIKYMARSFRGAVAIVTETEEIWYL
Sbjct: 481  FCNPYNNLIFIWGNFLLQSSNKENFIYLADFPKELSIKYMARSFRGAVAIVTETEEIWYL 540

Query: 541  LEGSYRVYQLFPSKGWQVHISLKLMQQSSLYASNETMLTLFYEDSKLYQLVYLMNNQKGQ 600
            LEGSYRVYQLFPSKGWQVHISLKLMQQSSLYASNETMLTLFYEDSKLYQLVYLMNNQKGQ
Sbjct: 541  LEGSYRVYQLFPSKGWQVHISLKLMQQSSLYASNETMLTLFYEDSKLYQLVYLMNNQKGQ 600

Query: 601  LVKRLVPVEQLLMYQQHTSHYDLERKGGYLMLSFIDFCPFSVMRLRSLPSPQRYTRQERY 660
            LVKRLVPVEQLLMYQQHTSHYDLERKGGYLMLSFIDFCPFSVMRLRSLPSPQRYTRQERY
Sbjct: 601  LVKRLVPVEQLLMYQQHTSHYDLERKGGYLMLSFIDFCPFSVMRLRSLPSPQRYTRQERY 660

Query: 661  RARPPRVLERSGFHNENSLAIYQGLVYYLLWLHSVYDKPYADPVHDPTWRWWANNKQDQD 720
            RARPPRVLERSGFHNENSLAIYQGLVYYLLWLHSVYDKPYADPVHDPTWRWWANNKQDQD
Sbjct: 661  RARPPRVLERSGFHNENSLAIYQGLVYYLLWLHSVYDKPYADPVHDPTWRWWANNKQDQD 720

Query: 721  YYFFLASNWRSAGGVSIEMDSYEKIYNLESAYELPERIFLDKGTEYSFAIFLSAQGHSFR 780
            YYFFLASNWRSAGGVSIEMDSYEKIYNLESAYELPERIFLDKGTEYSFAIFLSAQGHSFR
Sbjct: 721  YYFFLASNWRSAGGVSIEMDSYEKIYNLESAYELPERIFLDKGTEYSFAIFLSAQGHSFR 780

Query: 781  TQSELGTAFQLHSQVDVGVVLADPGCIEASVKQEVLINRNSVLFSITLKDKKLCYDQGIS 840
            TQSELGTAFQLHSQVDVGVVLADPGCIEASVKQEVLINRNSVLFSITLKDKKLCYDQGIS
Sbjct: 781  TQSELGTAFQLHSQVDVGVVLADPGCIEASVKQEVLINRNSVLFSITLKDKKLCYDQGIS 840

Query: 841  GHHLMETSMTVNVVGSSGLCFQETHLGPHMQGNLMVPVFIGCPPGKRLAFDITYTLEYSR 900
            GHHLMETSMTVNVVGSSGLCFQETHLGPHMQGNLMVPVFIGCPPGKRLAFDITYTLEYSR
Sbjct: 841  GHHLMETSMTVNVVGSSGLCFQETHLGPHMQGNLMVPVFIGCPPGKRLAFDITYTLEYSR 900

Query: 901  LKNKHYFDCVNVNPEMPCFLFRDIFYPFFLIQDLVTGDSGSFQGSYVLLVVGGGPTLDSL 960
            LKNKHYFDCVNVNPEMPCFLFRDIFYPFFLIQDLVTGDSGSFQGSYVLLVVGGGPTLDSL
Sbjct: 901  LKNKHYFDCVNVNPEMPCFLFRDIFYPFFLIQDLVTGDSGSFQGSYVLLVVGGGPTLDSL 960

Query: 961  KDYSEDEIYRFNSPLDKTNSLIWTTRTTRTTKDSAFHIMSHESPGIEWLCLENAPCYDNV 1020
            KDYSEDEIYRFNSPLDKTNSLIWTTRTTRTTKDSAFHIMSHESPGIEWLCLENAPCYDNV
Sbjct: 961  KDYSEDEIYRFNSPLDKTNSLIWTTRTTRTTKDSAFHIMSHESPGIEWLCLENAPCYDNV 1020

Query: 1021 PQGIFAPEFFFKVLVSNRGVDTSTYCNYQLTFLLHIHGLPLSPKRALFIIMVSASVFVGL 1080
            PQGIFAPEFFFKVLVSNRGVDTSTYCNYQLTFLLHIHGLPLSPKRALFIIMVSASVFVGL
Sbjct: 1021 PQGIFAPEFFFKVLVSNRGVDTSTYCNYQLTFLLHIHGLPLSPKRALFIIMVSASVFVGL 1080

Query: 1081 VIFYIAFCLLWPLVVKGCTMIRWKINNLIASESYYTYASISGISSMPSLRHSRMGSMFSS 1140
            VIFYIAFCLLWPLVVKGCTMIRWKINNLIASESYYTYASISGISSMPSLRHSRMGSMFSS
Sbjct: 1081 VIFYIAFCLLWPLVVKGCTMIRWKINNLIASESYYTYASISGISSMPSLRHSRMGSMFSS 1140

Query: 1141 RMTEDRAEPKEAVERQLMT 1159
            RMTEDRAEPKEAVERQLMT
Sbjct: 1141 RMTEDRAEPKEAVERQLMT 1159


>gi|193083122 translocase of outer mitochondrial membrane 40 [Homo
           sapiens]
          Length = 361

 Score = 31.6 bits (70), Expect = 4.6
 Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 1/78 (1%)

Query: 805 GCIEASVKQEVLINRNSVLFSITLKDKKLCYDQGISGHHLMETSMTVNVVGSSGLCFQET 864
           GC+      E    +   LF I ++  KL  ++G+S H  +  ++ ++ +G S   F  T
Sbjct: 75  GCLPNPGTFEECHRKCKELFPIQMEGVKLTVNKGLSNHFQVNHTVALSTIGESNYHFGVT 134

Query: 865 HLG-PHMQGNLMVPVFIG 881
           ++G   +      PV +G
Sbjct: 135 YVGTKQLSPTEAFPVLVG 152


>gi|193083120 translocase of outer mitochondrial membrane 40 [Homo
           sapiens]
          Length = 361

 Score = 31.6 bits (70), Expect = 4.6
 Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 1/78 (1%)

Query: 805 GCIEASVKQEVLINRNSVLFSITLKDKKLCYDQGISGHHLMETSMTVNVVGSSGLCFQET 864
           GC+      E    +   LF I ++  KL  ++G+S H  +  ++ ++ +G S   F  T
Sbjct: 75  GCLPNPGTFEECHRKCKELFPIQMEGVKLTVNKGLSNHFQVNHTVALSTIGESNYHFGVT 134

Query: 865 HLG-PHMQGNLMVPVFIG 881
           ++G   +      PV +G
Sbjct: 135 YVGTKQLSPTEAFPVLVG 152


>gi|5174723 translocase of outer mitochondrial membrane 40 [Homo
           sapiens]
          Length = 361

 Score = 31.6 bits (70), Expect = 4.6
 Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 1/78 (1%)

Query: 805 GCIEASVKQEVLINRNSVLFSITLKDKKLCYDQGISGHHLMETSMTVNVVGSSGLCFQET 864
           GC+      E    +   LF I ++  KL  ++G+S H  +  ++ ++ +G S   F  T
Sbjct: 75  GCLPNPGTFEECHRKCKELFPIQMEGVKLTVNKGLSNHFQVNHTVALSTIGESNYHFGVT 134

Query: 865 HLG-PHMQGNLMVPVFIG 881
           ++G   +      PV +G
Sbjct: 135 YVGTKQLSPTEAFPVLVG 152


>gi|160707905 similar to solute carrier family 35, member E2 [Homo
           sapiens]
          Length = 405

 Score = 31.2 bits (69), Expect = 6.0
 Identities = 36/145 (24%), Positives = 58/145 (40%), Gaps = 19/145 (13%)

Query: 294 TATIYDTIATESTLFIRQNQLVYYFT----GTYTTLYERNR------------GSGSWIR 337
           T TI +T   ES L +  ++ + Y T     ++ TL+                G+   + 
Sbjct: 55  TVTITETTVIESDLGVWSSRALLYLTLWFFFSFCTLFLNKYILSLLGGEPSMLGAVQMLS 114

Query: 338 VLASECIKKLCP--VYFHSNGSEYIMA-LTTGKHEGYVHFGTIRDGQVSFEMLPRQWSVC 394
                C+K L P  +Y H     Y    L T    G + F T+  G VS + +   ++  
Sbjct: 115 TTVIGCVKTLVPCCLYQHKARLSYPPNFLMTMLFVGLMRFATVVLGLVSLKNVAVSFAET 174

Query: 395 EQIGVTTCSIIWSEYIAGEYTLLLL 419
            +      ++I S  I GEYT LL+
Sbjct: 175 VKSSAPIFTVIMSRMILGEYTGLLV 199


>gi|169234667 transmembrane protein 39B [Homo sapiens]
          Length = 492

 Score = 31.2 bits (69), Expect = 6.0
 Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 15/104 (14%)

Query: 470 YTSTAMAPKGIFCNPYNNLIFIWGNFLLQ-SSNKENFIYLADFPKELSIKYMARSFRGAV 528
           +T   M P+G+      N+    G++ +   S+  +F +   F K L I  +     GAV
Sbjct: 373 WTEECMWPQGVLVKHSKNVYKAVGHYNVAIPSDVSHFRFHFFFSKPLRILNILLLLEGAV 432

Query: 529 AIVTETEEIWYLLEGSYRVYQLFPSKGWQVHISLKLMQQSSLYA 572
            +              Y++Y L  S+ W   ISL L+  S+ YA
Sbjct: 433 IV--------------YQLYSLMSSEKWHQTISLALILFSNYYA 462


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.138    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,529,799
Number of Sequences: 37866
Number of extensions: 1998539
Number of successful extensions: 3594
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3590
Number of HSP's gapped (non-prelim): 6
length of query: 1159
length of database: 18,247,518
effective HSP length: 113
effective length of query: 1046
effective length of database: 13,968,660
effective search space: 14611218360
effective search space used: 14611218360
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 68 (30.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.