Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 10801345
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|10801345 eukaryotic translation initiation factor 3, subunit
12 [Homo sapiens]
(218 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|10801345 eukaryotic translation initiation factor 3, subunit ... 442 e-124
gi|169168320 PREDICTED: similar to hCG39609 [Homo sapiens] 268 3e-72
gi|239748615 PREDICTED: similar to hCG39609 [Homo sapiens] 268 3e-72
gi|239742640 PREDICTED: similar to hCG39609 [Homo sapiens] 268 3e-72
gi|28875786 FCH and double SH3 domains 1 [Homo sapiens] 29 2.7
gi|7019499 peroxisome proliferator-activated receptor gamma, coa... 29 3.5
gi|46399200 testis-specific bromodomain protein [Homo sapiens] 29 3.5
gi|46399198 testis-specific bromodomain protein [Homo sapiens] 29 3.5
gi|71773415 annexin VI isoform 2 [Homo sapiens] 28 4.6
gi|71773329 annexin VI isoform 1 [Homo sapiens] 28 4.6
gi|151101151 coiled-coil domain containing 2 isoform b [Homo sap... 28 6.0
gi|151101140 coiled-coil domain containing 2 isoform a [Homo sap... 28 6.0
gi|151105223 coiled-coil domain containing 2 isoform a [Homo sap... 28 6.0
gi|151105229 coiled-coil domain containing 2 isoform a [Homo sap... 28 6.0
gi|239755109 PREDICTED: hypothetical protein XP_002346219 [Homo ... 28 7.9
gi|154277116 spectrin repeat containing, nuclear envelope 1 isof... 28 7.9
>gi|10801345 eukaryotic translation initiation factor 3, subunit 12
[Homo sapiens]
Length = 218
Score = 442 bits (1137), Expect = e-124
Identities = 218/218 (100%), Positives = 218/218 (100%)
Query: 1 MAMFEQMRANVGKLLKGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAF 60
MAMFEQMRANVGKLLKGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAF
Sbjct: 1 MAMFEQMRANVGKLLKGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAF 60
Query: 61 FQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQA 120
FQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQA
Sbjct: 61 FQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQA 120
Query: 121 LDENMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSKYGWS 180
LDENMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSKYGWS
Sbjct: 121 LDENMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSKYGWS 180
Query: 181 ADESGQIFICSQEESIKPKNIVEKIDFDSVSSIMASSQ 218
ADESGQIFICSQEESIKPKNIVEKIDFDSVSSIMASSQ
Sbjct: 181 ADESGQIFICSQEESIKPKNIVEKIDFDSVSSIMASSQ 218
>gi|169168320 PREDICTED: similar to hCG39609 [Homo sapiens]
Length = 183
Score = 268 bits (685), Expect = 3e-72
Identities = 148/218 (67%), Positives = 156/218 (71%), Gaps = 35/218 (16%)
Query: 1 MAMFEQMRANVGKLLKGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAF 60
M +FEQMRANVG LL+GI+R NPE LATLE YVE QAK+ AYDLEAN VLKLYQ NP F
Sbjct: 1 MVIFEQMRANVGMLLQGINRNNPEKLATLECYVEMQAKDTAYDLEANPVVLKLYQSNPVF 60
Query: 61 FQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQA 120
FQTT TAQI LKALTNLPHT+FT +
Sbjct: 61 FQTTDTAQIQLKALTNLPHTNFT-----------------------------------PS 85
Query: 121 LDENMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSKYGWS 180
LDEN+DLLEGITGFEDSVR IC VVGITYQHID WLLAEM G LSDSQLKVWM KY W
Sbjct: 86 LDENVDLLEGITGFEDSVRMCICPVVGITYQHIDHWLLAEMPGYLSDSQLKVWMRKYTWR 145
Query: 181 ADESGQIFICSQEESIKPKNIVEKIDFDSVSSIMASSQ 218
ADES QIFICSQEE+IKPKN VEKIDFDSVSSIMA Q
Sbjct: 146 ADESQQIFICSQEENIKPKNPVEKIDFDSVSSIMAFFQ 183
>gi|239748615 PREDICTED: similar to hCG39609 [Homo sapiens]
Length = 183
Score = 268 bits (685), Expect = 3e-72
Identities = 148/218 (67%), Positives = 156/218 (71%), Gaps = 35/218 (16%)
Query: 1 MAMFEQMRANVGKLLKGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAF 60
M +FEQMRANVG LL+GI+R NPE LATLE YVE QAK+ AYDLEAN VLKLYQ NP F
Sbjct: 1 MVIFEQMRANVGMLLQGINRNNPEKLATLECYVEMQAKDTAYDLEANPVVLKLYQSNPVF 60
Query: 61 FQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQA 120
FQTT TAQI LKALTNLPHT+FT +
Sbjct: 61 FQTTDTAQIQLKALTNLPHTNFT-----------------------------------PS 85
Query: 121 LDENMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSKYGWS 180
LDEN+DLLEGITGFEDSVR IC VVGITYQHID WLLAEM G LSDSQLKVWM KY W
Sbjct: 86 LDENVDLLEGITGFEDSVRMCICPVVGITYQHIDHWLLAEMPGYLSDSQLKVWMRKYTWR 145
Query: 181 ADESGQIFICSQEESIKPKNIVEKIDFDSVSSIMASSQ 218
ADES QIFICSQEE+IKPKN VEKIDFDSVSSIMA Q
Sbjct: 146 ADESQQIFICSQEENIKPKNPVEKIDFDSVSSIMAFFQ 183
>gi|239742640 PREDICTED: similar to hCG39609 [Homo sapiens]
Length = 183
Score = 268 bits (685), Expect = 3e-72
Identities = 148/218 (67%), Positives = 156/218 (71%), Gaps = 35/218 (16%)
Query: 1 MAMFEQMRANVGKLLKGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAF 60
M +FEQMRANVG LL+GI+R NPE LATLE YVE QAK+ AYDLEAN VLKLYQ NP F
Sbjct: 1 MVIFEQMRANVGMLLQGINRNNPEKLATLECYVEMQAKDTAYDLEANPVVLKLYQSNPVF 60
Query: 61 FQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQA 120
FQTT TAQI LKALTNLPHT+FT +
Sbjct: 61 FQTTDTAQIQLKALTNLPHTNFT-----------------------------------PS 85
Query: 121 LDENMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSKYGWS 180
LDEN+DLLEGITGFEDSVR IC VVGITYQHID WLLAEM G LSDSQLKVWM KY W
Sbjct: 86 LDENVDLLEGITGFEDSVRMCICPVVGITYQHIDHWLLAEMPGYLSDSQLKVWMRKYTWR 145
Query: 181 ADESGQIFICSQEESIKPKNIVEKIDFDSVSSIMASSQ 218
ADES QIFICSQEE+IKPKN VEKIDFDSVSSIMA Q
Sbjct: 146 ADESQQIFICSQEENIKPKNPVEKIDFDSVSSIMAFFQ 183
>gi|28875786 FCH and double SH3 domains 1 [Homo sapiens]
Length = 690
Score = 29.3 bits (64), Expect = 2.7
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 34 ETQAKENAY--DLEANLAVLKLYQFN--PAFFQTTVT--AQILLKALTNLPHTDFTLCKC 87
+ QA N Y +L A A L Y PA + V+ ++ L LT+L HT+ +
Sbjct: 203 QLQAARNEYLLNLVATNAHLDHYYQEELPALLKALVSELSEHLRDPLTSLSHTELEAAEV 262
Query: 88 MIDQAHQEERPIRQILYLGDL 108
+++ AH+ E+ Q+ + DL
Sbjct: 263 ILEHAHRGEQTTSQVSWEQDL 283
>gi|7019499 peroxisome proliferator-activated receptor gamma,
coactivator 1 alpha [Homo sapiens]
Length = 798
Score = 28.9 bits (63), Expect = 3.5
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 164 DLSDSQLKVWMSKYGWSADESGQIFICSQEESIKPKNIVEKIDFDSVSSIMA 215
D++D ++ W +D+S I S + + +P NI EKID ++ ++++A
Sbjct: 42 DVNDLDTDSFLGGLKWCSDQSE---IISNQYNNEPSNIFEKIDEENEANLLA 90
>gi|46399200 testis-specific bromodomain protein [Homo sapiens]
Length = 947
Score = 28.9 bits (63), Expect = 3.5
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 22 NPENLATLERYVETQAKENAYDLEAN--LAVLKLYQFNPAFFQTTVTAQIL 70
NP +L T++ ++ Q ++AY A+ L + Y++NP + A++L
Sbjct: 315 NPMDLGTIKEKMDNQEYKDAYKFAADVRLMFMNCYKYNPPDHEVVTMARML 365
>gi|46399198 testis-specific bromodomain protein [Homo sapiens]
Length = 947
Score = 28.9 bits (63), Expect = 3.5
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 22 NPENLATLERYVETQAKENAYDLEAN--LAVLKLYQFNPAFFQTTVTAQIL 70
NP +L T++ ++ Q ++AY A+ L + Y++NP + A++L
Sbjct: 315 NPMDLGTIKEKMDNQEYKDAYKFAADVRLMFMNCYKYNPPDHEVVTMARML 365
>gi|71773415 annexin VI isoform 2 [Homo sapiens]
Length = 667
Score = 28.5 bits (62), Expect = 4.6
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 48 LAVLKLYQFNPAFFQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQI 102
LAV+K + P +F A+ L KA+ L D TL + M+ ++ + IR+I
Sbjct: 243 LAVVKCIRSTPEYF-----AERLFKAMKGLGTRDNTLIRIMVSRSELDMLDIREI 292
>gi|71773329 annexin VI isoform 1 [Homo sapiens]
Length = 673
Score = 28.5 bits (62), Expect = 4.6
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 48 LAVLKLYQFNPAFFQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQI 102
LAV+K + P +F A+ L KA+ L D TL + M+ ++ + IR+I
Sbjct: 243 LAVVKCIRSTPEYF-----AERLFKAMKGLGTRDNTLIRIMVSRSELDMLDIREI 292
>gi|151101151 coiled-coil domain containing 2 isoform b [Homo
sapiens]
Length = 372
Score = 28.1 bits (61), Expect = 6.0
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 6 QMRANVGKLLKGIDRYNPENLATL--ERYVETQAKENAYDLEANLA 49
++ V KL KGI+ YN EN L E+ ET A E +L+ LA
Sbjct: 107 ELTTEVNKLQKGIEMYNQENSVYLSYEKRAETLAVE-IKELQGQLA 151
>gi|151101140 coiled-coil domain containing 2 isoform a [Homo
sapiens]
Length = 600
Score = 28.1 bits (61), Expect = 6.0
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 6 QMRANVGKLLKGIDRYNPENLATL--ERYVETQAKENAYDLEANLA 49
++ V KL KGI+ YN EN L E+ ET A E +L+ LA
Sbjct: 107 ELTTEVNKLQKGIEMYNQENSVYLSYEKRAETLAVE-IKELQGQLA 151
>gi|151105223 coiled-coil domain containing 2 isoform a [Homo
sapiens]
Length = 600
Score = 28.1 bits (61), Expect = 6.0
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 6 QMRANVGKLLKGIDRYNPENLATL--ERYVETQAKENAYDLEANLA 49
++ V KL KGI+ YN EN L E+ ET A E +L+ LA
Sbjct: 107 ELTTEVNKLQKGIEMYNQENSVYLSYEKRAETLAVE-IKELQGQLA 151
>gi|151105229 coiled-coil domain containing 2 isoform a [Homo
sapiens]
Length = 600
Score = 28.1 bits (61), Expect = 6.0
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 6 QMRANVGKLLKGIDRYNPENLATL--ERYVETQAKENAYDLEANLA 49
++ V KL KGI+ YN EN L E+ ET A E +L+ LA
Sbjct: 107 ELTTEVNKLQKGIEMYNQENSVYLSYEKRAETLAVE-IKELQGQLA 151
>gi|239755109 PREDICTED: hypothetical protein XP_002346219 [Homo
sapiens]
Length = 115
Score = 27.7 bits (60), Expect = 7.9
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 70 LLKALTNLPHTDFTLCKC--MIDQAHQEERPIRQILYLGDLLETCHFQAFWQALD 122
LLKA+ NLP + + I ++ QE++ + + + DLL HF F +AL+
Sbjct: 19 LLKAVPNLPLSQSVVASGGGQIFESSQEDQELLLAMQILDLLLFAHFCLFSEALE 73
>gi|154277116 spectrin repeat containing, nuclear envelope 1 isoform 1
[Homo sapiens]
Length = 8797
Score = 27.7 bits (60), Expect = 7.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 107 DLLETCHFQAFWQALDENMDLLEGITGFED 136
DLLET + Q L + ++E I GFED
Sbjct: 3949 DLLETSSLETITQQLAHHKAMMEEIAGFED 3978
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.135 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,287,438
Number of Sequences: 37866
Number of extensions: 290799
Number of successful extensions: 708
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 697
Number of HSP's gapped (non-prelim): 22
length of query: 218
length of database: 18,247,518
effective HSP length: 98
effective length of query: 120
effective length of database: 14,536,650
effective search space: 1744398000
effective search space used: 1744398000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.