Search of human proteins with 10190720

Search of human proteins with 10190720

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|10190720 NmrA-like family domain containing 1 [Homo sapiens]
         (299 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|10190720 NmrA-like family domain containing 1 [Homo sapiens]       600   e-172
gi|239745448 PREDICTED: hypothetical protein XP_002343493 [Homo ...    36   0.036
gi|239756515 PREDICTED: similar to Putative 3-beta-HSD family pr...    36   0.047
gi|239751020 PREDICTED: hypothetical protein XP_002347673 [Homo ...    36   0.047
gi|190358504 SHC SH2-domain binding protein 1 [Homo sapiens]           29   4.4  
gi|124248531 hypothetical protein LOC441476 [Homo sapiens]             28   7.5  

>gi|10190720 NmrA-like family domain containing 1 [Homo sapiens]
          Length = 299

 Score =  600 bits (1546), Expect = e-172
 Identities = 299/299 (100%), Positives = 299/299 (100%)

Query: 1   MVDKKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQD 60
           MVDKKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQD
Sbjct: 1   MVDKKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQD 60

Query: 61  DQVIMELALNGAYATFIVTNYWESCSQEQEVKQGKLLADLARRLGLHYVVYSGLENIKKL 120
           DQVIMELALNGAYATFIVTNYWESCSQEQEVKQGKLLADLARRLGLHYVVYSGLENIKKL
Sbjct: 61  DQVIMELALNGAYATFIVTNYWESCSQEQEVKQGKLLADLARRLGLHYVVYSGLENIKKL 120

Query: 121 TAGRLAAAHFDGKGEVEEYFRDIGVPMTSVRLPCYFENLLSHFLPQKAPDGKSYLLSLPT 180
           TAGRLAAAHFDGKGEVEEYFRDIGVPMTSVRLPCYFENLLSHFLPQKAPDGKSYLLSLPT
Sbjct: 121 TAGRLAAAHFDGKGEVEEYFRDIGVPMTSVRLPCYFENLLSHFLPQKAPDGKSYLLSLPT 180

Query: 181 GDVPMDGMSVSDLGPVVLSLLKMPEKYVGQNIGLSTCRHTAEEYAALLTKHTRKVVHDAK 240
           GDVPMDGMSVSDLGPVVLSLLKMPEKYVGQNIGLSTCRHTAEEYAALLTKHTRKVVHDAK
Sbjct: 181 GDVPMDGMSVSDLGPVVLSLLKMPEKYVGQNIGLSTCRHTAEEYAALLTKHTRKVVHDAK 240

Query: 241 MTPEDYEKLGFPGARDLANMFRFYALRPDRDIELTLRLNPKALTLDQWLEQHKGDFNLL 299
           MTPEDYEKLGFPGARDLANMFRFYALRPDRDIELTLRLNPKALTLDQWLEQHKGDFNLL
Sbjct: 241 MTPEDYEKLGFPGARDLANMFRFYALRPDRDIELTLRLNPKALTLDQWLEQHKGDFNLL 299


>gi|239745448 PREDICTED: hypothetical protein XP_002343493 [Homo
           sapiens]
          Length = 422

 Score = 36.2 bits (82), Expect = 0.036
 Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 13/122 (10%)

Query: 4   KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQV 63
           ++ V+V GG G  G S+   L + GT  + +  R P+ + + E +      +Q D  D+ 
Sbjct: 33  RQKVLVTGGGGYLGFSLGSHLAKSGTSVILLDRRRPQWELSPETKF-----IQADVRDEE 87

Query: 64  IMELALNGAYATFIVTNYWESCSQEQEVKQ--------GKLLADLARRLGLHYVVYSGLE 115
            +  A  G    F V +Y  S +++ + +Q         KL+ D+  R  +  ++Y+   
Sbjct: 88  ALYRAFEGVDCVFHVASYGMSGAEKLQKEQIESINVGGTKLVIDVCVRRRVPRLIYTSTV 147

Query: 116 NI 117
           N+
Sbjct: 148 NV 149


>gi|239756515 PREDICTED: similar to Putative 3-beta-HSD family
           protein ENSP00000330812 [Homo sapiens]
          Length = 422

 Score = 35.8 bits (81), Expect = 0.047
 Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 13/122 (10%)

Query: 4   KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQV 63
           ++ V+V GG G  G S+   L + GT  + +  R P+ + + E +      +Q D  D+ 
Sbjct: 33  RQKVLVTGGGGYLGFSLGSHLAKSGTSVILLDRRRPQWELSPETKF-----IQADVRDEE 87

Query: 64  IMELALNGAYATFIVTNYWESCSQEQEVKQ--------GKLLADLARRLGLHYVVYSGLE 115
            +  A  G    F V +Y  S +++ + +Q         KL+ D+  R  +  ++Y+   
Sbjct: 88  ALYHAFEGVDCVFHVASYGMSGAEKLQKEQIESINVGGTKLVIDVCVRRRVPRLIYTSTV 147

Query: 116 NI 117
           N+
Sbjct: 148 NV 149


>gi|239751020 PREDICTED: hypothetical protein XP_002347673 [Homo
           sapiens]
          Length = 422

 Score = 35.8 bits (81), Expect = 0.047
 Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 13/122 (10%)

Query: 4   KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQV 63
           ++ V+V GG G  G S+   L + GT  + +  R P+ + + E +      +Q D  D+ 
Sbjct: 33  RQKVLVTGGGGYLGFSLGSHLAKSGTSVILLDRRRPQWELSPETKF-----IQADVRDEE 87

Query: 64  IMELALNGAYATFIVTNYWESCSQEQEVKQ--------GKLLADLARRLGLHYVVYSGLE 115
            +  A  G    F V +Y  S +++ + +Q         KL+ D+  R  +  ++Y+   
Sbjct: 88  ALYHAFEGVDCVFHVASYGMSGAEKLQKEQIESINVGGTKLVIDVCVRRRVPRLIYTSTV 147

Query: 116 NI 117
           N+
Sbjct: 148 NV 149


>gi|190358504 SHC SH2-domain binding protein 1 [Homo sapiens]
          Length = 672

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 20/64 (31%), Positives = 28/64 (43%)

Query: 45  KELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTNYWESCSQEQEVKQGKLLADLARRL 104
           KE RL   E+     D  V  + AL   +  F   N W S  +E+E +    +  +  RL
Sbjct: 169 KEHRLPLQELWVVFDDSGVFDQTALAIEHVRFFYQNIWRSWDEEEEDEYDYFVRCVEPRL 228

Query: 105 GLHY 108
            LHY
Sbjct: 229 RLHY 232


>gi|124248531 hypothetical protein LOC441476 [Homo sapiens]
          Length = 308

 Score = 28.5 bits (62), Expect = 7.5
 Identities = 12/21 (57%), Positives = 13/21 (61%)

Query: 237 HDAKMTPEDYEKLGFPGARDL 257
           H A  TPE +  LG PGAR L
Sbjct: 188 HSASKTPEGHTHLGLPGARGL 208


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.137    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,299,858
Number of Sequences: 37866
Number of extensions: 490451
Number of successful extensions: 1066
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1063
Number of HSP's gapped (non-prelim): 6
length of query: 299
length of database: 18,247,518
effective HSP length: 102
effective length of query: 197
effective length of database: 14,385,186
effective search space: 2833881642
effective search space used: 2833881642
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.