Search of human proteins with 18641366

Search of human proteins with 18641366

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|18641366 protein tyrosine phosphatase, receptor type, C
isoform 4 [Homo sapiens]
         (34 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|18641366 protein tyrosine phosphatase, receptor type, C isofo...    75   1e-14
gi|18641364 protein tyrosine phosphatase, receptor type, C isofo...    70   3e-13
gi|18641347 protein tyrosine phosphatase, receptor type, C isofo...    70   3e-13
gi|18641362 protein tyrosine phosphatase, receptor type, C isofo...    68   1e-12

>gi|18641366 protein tyrosine phosphatase, receptor type, C
          isoform 4 [Homo sapiens]
          Length = 34

 Score = 74.7 bits (182), Expect = 1e-14
 Identities = 34/34 (100%), Positives = 34/34 (100%)

Query: 1  MYLWLKLLAFGFAFLDTEVFVTGQSPTPSPTGKN 34
          MYLWLKLLAFGFAFLDTEVFVTGQSPTPSPTGKN
Sbjct: 1  MYLWLKLLAFGFAFLDTEVFVTGQSPTPSPTGKN 34


>gi|18641364 protein tyrosine phosphatase, receptor type, C
          isoform 3 precursor [Homo sapiens]
          Length = 1256

 Score = 70.5 bits (171), Expect = 3e-13
 Identities = 32/32 (100%), Positives = 32/32 (100%)

Query: 1  MYLWLKLLAFGFAFLDTEVFVTGQSPTPSPTG 32
          MYLWLKLLAFGFAFLDTEVFVTGQSPTPSPTG
Sbjct: 1  MYLWLKLLAFGFAFLDTEVFVTGQSPTPSPTG 32


>gi|18641347 protein tyrosine phosphatase, receptor type, C
          isoform 1 precursor [Homo sapiens]
          Length = 1304

 Score = 70.5 bits (171), Expect = 3e-13
 Identities = 32/32 (100%), Positives = 32/32 (100%)

Query: 1  MYLWLKLLAFGFAFLDTEVFVTGQSPTPSPTG 32
          MYLWLKLLAFGFAFLDTEVFVTGQSPTPSPTG
Sbjct: 1  MYLWLKLLAFGFAFLDTEVFVTGQSPTPSPTG 32


>gi|18641362 protein tyrosine phosphatase, receptor type, C
          isoform 2 precursor [Homo sapiens]
          Length = 1143

 Score = 68.2 bits (165), Expect = 1e-12
 Identities = 31/31 (100%), Positives = 31/31 (100%)

Query: 1  MYLWLKLLAFGFAFLDTEVFVTGQSPTPSPT 31
          MYLWLKLLAFGFAFLDTEVFVTGQSPTPSPT
Sbjct: 1  MYLWLKLLAFGFAFLDTEVFVTGQSPTPSPT 31


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.140    0.449 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,592,763
Number of Sequences: 37866
Number of extensions: 36619
Number of successful extensions: 74
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70
Number of HSP's gapped (non-prelim): 4
length of query: 34
length of database: 18,247,518
effective HSP length: 9
effective length of query: 25
effective length of database: 17,906,724
effective search space: 447668100
effective search space used: 447668100
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.