Search of human proteins with 171846268

Search of human proteins with 171846268

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|171846268 Ts translation elongation factor, mitochondrial
precursor [Homo sapiens]
         (325 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|171846268 Ts translation elongation factor, mitochondrial pre...   646   0.0  
gi|54607141 vacuolar protein sorting 13D isoform 2 [Homo sapiens]      38   0.014
gi|54607139 vacuolar protein sorting 13D isoform 1 [Homo sapiens]      38   0.014
gi|4507831 Unc-51-like kinase 1 [Homo sapiens]                         30   2.9  
gi|57634534 nucleoporin 205kDa [Homo sapiens]                          29   6.5  

>gi|171846268 Ts translation elongation factor, mitochondrial
           precursor [Homo sapiens]
          Length = 325

 Score =  646 bits (1666), Expect = 0.0
 Identities = 325/325 (100%), Positives = 325/325 (100%)

Query: 1   MSLLRSLRVFLVARTGSYPAGSLLRQSPQPRHTFYAGPRLSASASSKELLMKLRRKTGYS 60
           MSLLRSLRVFLVARTGSYPAGSLLRQSPQPRHTFYAGPRLSASASSKELLMKLRRKTGYS
Sbjct: 1   MSLLRSLRVFLVARTGSYPAGSLLRQSPQPRHTFYAGPRLSASASSKELLMKLRRKTGYS 60

Query: 61  FVNCKKALETCGGDLKQAEIWLHKEAQKEGWSKAAKLQGRKTKEGLIGLLQEGNTTVLVE 120
           FVNCKKALETCGGDLKQAEIWLHKEAQKEGWSKAAKLQGRKTKEGLIGLLQEGNTTVLVE
Sbjct: 61  FVNCKKALETCGGDLKQAEIWLHKEAQKEGWSKAAKLQGRKTKEGLIGLLQEGNTTVLVE 120

Query: 121 VNCETDFVSRNLKFQLLVQQVALGTMMHCQTLKDQPSAYSKGFLNSSELSGLPAGPDREG 180
           VNCETDFVSRNLKFQLLVQQVALGTMMHCQTLKDQPSAYSKGFLNSSELSGLPAGPDREG
Sbjct: 121 VNCETDFVSRNLKFQLLVQQVALGTMMHCQTLKDQPSAYSKGFLNSSELSGLPAGPDREG 180

Query: 181 SLKDQLALAIGKLGENMILKRAAWVKVPSGFYVGSYVHGAMQSPSLHKLVLGKYGALVIC 240
           SLKDQLALAIGKLGENMILKRAAWVKVPSGFYVGSYVHGAMQSPSLHKLVLGKYGALVIC
Sbjct: 181 SLKDQLALAIGKLGENMILKRAAWVKVPSGFYVGSYVHGAMQSPSLHKLVLGKYGALVIC 240

Query: 241 ETSEQKTNLEDVGRRLGQHVVGMAPLSVGSLDDEPGGEAETKMLSQPYLLDPSITLGQYV 300
           ETSEQKTNLEDVGRRLGQHVVGMAPLSVGSLDDEPGGEAETKMLSQPYLLDPSITLGQYV
Sbjct: 241 ETSEQKTNLEDVGRRLGQHVVGMAPLSVGSLDDEPGGEAETKMLSQPYLLDPSITLGQYV 300

Query: 301 QPQGVSVVDFVRFECGEGEEAAETE 325
           QPQGVSVVDFVRFECGEGEEAAETE
Sbjct: 301 QPQGVSVVDFVRFECGEGEEAAETE 325


>gi|54607141 vacuolar protein sorting 13D isoform 2 [Homo sapiens]
          Length = 4363

 Score = 37.7 bits (86), Expect = 0.014
 Identities = 17/40 (42%), Positives = 25/40 (62%)

Query: 48   ELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKEAQ 87
            EL +   ++ G+S  +C+KAL  C G LK+A  WL K A+
Sbjct: 2639 ELQLARLQELGFSMDDCRKALLACQGQLKKAASWLFKNAE 2678


>gi|54607139 vacuolar protein sorting 13D isoform 1 [Homo sapiens]
          Length = 4388

 Score = 37.7 bits (86), Expect = 0.014
 Identities = 17/40 (42%), Positives = 25/40 (62%)

Query: 48   ELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKEAQ 87
            EL +   ++ G+S  +C+KAL  C G LK+A  WL K A+
Sbjct: 2639 ELQLARLQELGFSMDDCRKALLACQGQLKKAASWLFKNAE 2678


>gi|4507831 Unc-51-like kinase 1 [Homo sapiens]
          Length = 1050

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 11  LVARTGSYPAGSLLRQSPQPRHTFYAGPRLSASASSKELL 50
           +V   GS P+GS   Q P+ R  F AGP  SAS+S++ L+
Sbjct: 752 VVFTVGSPPSGSTPPQGPRTR-MFSAGPTGSASSSARHLV 790


>gi|57634534 nucleoporin 205kDa [Homo sapiens]
          Length = 2012

 Score = 28.9 bits (63), Expect = 6.5
 Identities = 14/36 (38%), Positives = 21/36 (58%)

Query: 122  NCETDFVSRNLKFQLLVQQVALGTMMHCQTLKDQPS 157
            N E D VS+  + +L +QQ+    M +CQ+L  Q S
Sbjct: 1737 NVEGDKVSKKDEIELAMQQICANVMEYCQSLMLQSS 1772


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.133    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,378,370
Number of Sequences: 37866
Number of extensions: 541112
Number of successful extensions: 1245
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1240
Number of HSP's gapped (non-prelim): 6
length of query: 325
length of database: 18,247,518
effective HSP length: 102
effective length of query: 223
effective length of database: 14,385,186
effective search space: 3207896478
effective search space used: 3207896478
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.