Search of human proteins with 169210005

Search of human proteins with 169210005

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169210005 PREDICTED: hypothetical protein [Homo sapiens]
         (88 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169210509 PREDICTED: hypothetical protein [Homo sapiens]           180   2e-46
gi|169210005 PREDICTED: hypothetical protein [Homo sapiens]           180   2e-46
gi|169209428 PREDICTED: hypothetical protein [Homo sapiens]           178   9e-46
gi|31543174 transmembrane protein 86B [Homo sapiens]                   28   2.0  
gi|4507001 solute carrier family 22 member 2 [Homo sapiens]            27   2.6  

>gi|169210509 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 88

 Score =  180 bits (456), Expect = 2e-46
 Identities = 88/88 (100%), Positives = 88/88 (100%)

Query: 1  MISPFCLLPVAAVLPLSGMYTRTHLLYARSFSRSSLQNGKSGEGKLMPIRCWERKQMRLI 60
          MISPFCLLPVAAVLPLSGMYTRTHLLYARSFSRSSLQNGKSGEGKLMPIRCWERKQMRLI
Sbjct: 1  MISPFCLLPVAAVLPLSGMYTRTHLLYARSFSRSSLQNGKSGEGKLMPIRCWERKQMRLI 60

Query: 61 FTYLYLVRTPVIHKVIFGPKSLVILPIG 88
          FTYLYLVRTPVIHKVIFGPKSLVILPIG
Sbjct: 61 FTYLYLVRTPVIHKVIFGPKSLVILPIG 88


>gi|169210005 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 88

 Score =  180 bits (456), Expect = 2e-46
 Identities = 88/88 (100%), Positives = 88/88 (100%)

Query: 1  MISPFCLLPVAAVLPLSGMYTRTHLLYARSFSRSSLQNGKSGEGKLMPIRCWERKQMRLI 60
          MISPFCLLPVAAVLPLSGMYTRTHLLYARSFSRSSLQNGKSGEGKLMPIRCWERKQMRLI
Sbjct: 1  MISPFCLLPVAAVLPLSGMYTRTHLLYARSFSRSSLQNGKSGEGKLMPIRCWERKQMRLI 60

Query: 61 FTYLYLVRTPVIHKVIFGPKSLVILPIG 88
          FTYLYLVRTPVIHKVIFGPKSLVILPIG
Sbjct: 61 FTYLYLVRTPVIHKVIFGPKSLVILPIG 88


>gi|169209428 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 88

 Score =  178 bits (451), Expect = 9e-46
 Identities = 87/88 (98%), Positives = 87/88 (98%)

Query: 1  MISPFCLLPVAAVLPLSGMYTRTHLLYARSFSRSSLQNGKSGEGKLMPIRCWERKQMRLI 60
          MISPFCLLPVAAVLPLSGMYTRTHLLYARSF RSSLQNGKSGEGKLMPIRCWERKQMRLI
Sbjct: 1  MISPFCLLPVAAVLPLSGMYTRTHLLYARSFPRSSLQNGKSGEGKLMPIRCWERKQMRLI 60

Query: 61 FTYLYLVRTPVIHKVIFGPKSLVILPIG 88
          FTYLYLVRTPVIHKVIFGPKSLVILPIG
Sbjct: 61 FTYLYLVRTPVIHKVIFGPKSLVILPIG 88


>gi|31543174 transmembrane protein 86B [Homo sapiens]
          Length = 226

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 6   CLLPVAAVLPLSGMYTRTHLLYARSFSRSSLQNG 39
           CL+  AA +P    +   HLLY  +F  S LQ G
Sbjct: 90  CLIWPAAFVPGMAAFATAHLLYVWAFGFSPLQPG 123


>gi|4507001 solute carrier family 22 member 2 [Homo sapiens]
          Length = 555

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 16/38 (42%), Positives = 21/38 (55%)

Query: 37  QNGKSGEGKLMPIRCWERKQMRLIFTYLYLVRTPVIHK 74
           +NGKS    L  +R  E    +L  ++L LVRTP I K
Sbjct: 309 KNGKSLPASLQRLRLEEETGKKLNPSFLDLVRTPQIRK 346


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.329    0.143    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,308,607
Number of Sequences: 37866
Number of extensions: 123378
Number of successful extensions: 252
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 247
Number of HSP's gapped (non-prelim): 5
length of query: 88
length of database: 18,247,518
effective HSP length: 60
effective length of query: 28
effective length of database: 15,975,558
effective search space: 447315624
effective search space used: 447315624
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.