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Search of human proteins with 169201966
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169201966 PREDICTED: similar to eukaryotic translation
initiation factor 3 subunit 6 interacting protein [Homo sapiens]
(316 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169194708 PREDICTED: similar to eukaryotic translation initia... 652 0.0
gi|169201966 PREDICTED: similar to eukaryotic translation initia... 652 0.0
gi|169192141 PREDICTED: similar to eukaryotic translation initia... 652 0.0
gi|7705433 eukaryotic translation initiation factor 3 subunit 6 ... 496 e-140
gi|224451003 PCI domain containing 2 [Homo sapiens] 36 0.051
gi|224451001 PCI domain containing 2 [Homo sapiens] 36 0.051
gi|209976986 PCI domain containing 2 [Homo sapiens] 36 0.051
gi|126012497 dynein, axonemal, heavy polypeptide 8 [Homo sapiens] 30 2.1
gi|157952215 protein tyrosine phosphatase, receptor type, B isof... 30 3.7
gi|157952213 protein tyrosine phosphatase, receptor type, B isof... 30 3.7
gi|122114658 hypothetical protein LOC23053 [Homo sapiens] 28 8.2
gi|110347427 ubiquitin specific protease 34 [Homo sapiens] 28 8.2
gi|34098959 cytochrome P450, family 2, subfamily U, polypeptide ... 28 8.2
>gi|169194708 PREDICTED: similar to eukaryotic translation
initiation factor 3 subunit 6 interacting protein [Homo
sapiens]
Length = 316
Score = 652 bits (1681), Expect = 0.0
Identities = 316/316 (100%), Positives = 316/316 (100%)
Query: 1 MTEGFPFCCGQHTGMDRGRVRGLCFSAHVPLVSRDNSRILSGHRDLFSIELNKKSIYSRV 60
MTEGFPFCCGQHTGMDRGRVRGLCFSAHVPLVSRDNSRILSGHRDLFSIELNKKSIYSRV
Sbjct: 1 MTEGFPFCCGQHTGMDRGRVRGLCFSAHVPLVSRDNSRILSGHRDLFSIELNKKSIYSRV 60
Query: 61 PECQVTTYYYVGFAYLMMCHYQDAIRVFANILLYIQRTKSMFQRTTYKYEMINKQNEQMH 120
PECQVTTYYYVGFAYLMMCHYQDAIRVFANILLYIQRTKSMFQRTTYKYEMINKQNEQMH
Sbjct: 61 PECQVTTYYYVGFAYLMMCHYQDAIRVFANILLYIQRTKSMFQRTTYKYEMINKQNEQMH 120
Query: 121 ALLAIALTMYPMSIDESIHLQRWDKYSNKMLCMQKGDPEVYEELFSYFCPKFLSPVVPNY 180
ALLAIALTMYPMSIDESIHLQRWDKYSNKMLCMQKGDPEVYEELFSYFCPKFLSPVVPNY
Sbjct: 121 ALLAIALTMYPMSIDESIHLQRWDKYSNKMLCMQKGDPEVYEELFSYFCPKFLSPVVPNY 180
Query: 181 DNVHPNYHKEPFLQQPKVFSDEVQQQAQLSTIRSFLKLYTTMPVAKLAGFLDLTEQEFRI 240
DNVHPNYHKEPFLQQPKVFSDEVQQQAQLSTIRSFLKLYTTMPVAKLAGFLDLTEQEFRI
Sbjct: 181 DNVHPNYHKEPFLQQPKVFSDEVQQQAQLSTIRSFLKLYTTMPVAKLAGFLDLTEQEFRI 240
Query: 241 QLPVFKHKLKNLVWTSSITTLDDEFQSASEVDFYIDKDMIHIMDTKVARRYGNFFIRQIH 300
QLPVFKHKLKNLVWTSSITTLDDEFQSASEVDFYIDKDMIHIMDTKVARRYGNFFIRQIH
Sbjct: 241 QLPVFKHKLKNLVWTSSITTLDDEFQSASEVDFYIDKDMIHIMDTKVARRYGNFFIRQIH 300
Query: 301 RFEELNRTLKKMGQRP 316
RFEELNRTLKKMGQRP
Sbjct: 301 RFEELNRTLKKMGQRP 316
>gi|169201966 PREDICTED: similar to eukaryotic translation
initiation factor 3 subunit 6 interacting protein [Homo
sapiens]
Length = 316
Score = 652 bits (1681), Expect = 0.0
Identities = 316/316 (100%), Positives = 316/316 (100%)
Query: 1 MTEGFPFCCGQHTGMDRGRVRGLCFSAHVPLVSRDNSRILSGHRDLFSIELNKKSIYSRV 60
MTEGFPFCCGQHTGMDRGRVRGLCFSAHVPLVSRDNSRILSGHRDLFSIELNKKSIYSRV
Sbjct: 1 MTEGFPFCCGQHTGMDRGRVRGLCFSAHVPLVSRDNSRILSGHRDLFSIELNKKSIYSRV 60
Query: 61 PECQVTTYYYVGFAYLMMCHYQDAIRVFANILLYIQRTKSMFQRTTYKYEMINKQNEQMH 120
PECQVTTYYYVGFAYLMMCHYQDAIRVFANILLYIQRTKSMFQRTTYKYEMINKQNEQMH
Sbjct: 61 PECQVTTYYYVGFAYLMMCHYQDAIRVFANILLYIQRTKSMFQRTTYKYEMINKQNEQMH 120
Query: 121 ALLAIALTMYPMSIDESIHLQRWDKYSNKMLCMQKGDPEVYEELFSYFCPKFLSPVVPNY 180
ALLAIALTMYPMSIDESIHLQRWDKYSNKMLCMQKGDPEVYEELFSYFCPKFLSPVVPNY
Sbjct: 121 ALLAIALTMYPMSIDESIHLQRWDKYSNKMLCMQKGDPEVYEELFSYFCPKFLSPVVPNY 180
Query: 181 DNVHPNYHKEPFLQQPKVFSDEVQQQAQLSTIRSFLKLYTTMPVAKLAGFLDLTEQEFRI 240
DNVHPNYHKEPFLQQPKVFSDEVQQQAQLSTIRSFLKLYTTMPVAKLAGFLDLTEQEFRI
Sbjct: 181 DNVHPNYHKEPFLQQPKVFSDEVQQQAQLSTIRSFLKLYTTMPVAKLAGFLDLTEQEFRI 240
Query: 241 QLPVFKHKLKNLVWTSSITTLDDEFQSASEVDFYIDKDMIHIMDTKVARRYGNFFIRQIH 300
QLPVFKHKLKNLVWTSSITTLDDEFQSASEVDFYIDKDMIHIMDTKVARRYGNFFIRQIH
Sbjct: 241 QLPVFKHKLKNLVWTSSITTLDDEFQSASEVDFYIDKDMIHIMDTKVARRYGNFFIRQIH 300
Query: 301 RFEELNRTLKKMGQRP 316
RFEELNRTLKKMGQRP
Sbjct: 301 RFEELNRTLKKMGQRP 316
>gi|169192141 PREDICTED: similar to eukaryotic translation
initiation factor 3 subunit 6 interacting protein [Homo
sapiens]
Length = 316
Score = 652 bits (1681), Expect = 0.0
Identities = 316/316 (100%), Positives = 316/316 (100%)
Query: 1 MTEGFPFCCGQHTGMDRGRVRGLCFSAHVPLVSRDNSRILSGHRDLFSIELNKKSIYSRV 60
MTEGFPFCCGQHTGMDRGRVRGLCFSAHVPLVSRDNSRILSGHRDLFSIELNKKSIYSRV
Sbjct: 1 MTEGFPFCCGQHTGMDRGRVRGLCFSAHVPLVSRDNSRILSGHRDLFSIELNKKSIYSRV 60
Query: 61 PECQVTTYYYVGFAYLMMCHYQDAIRVFANILLYIQRTKSMFQRTTYKYEMINKQNEQMH 120
PECQVTTYYYVGFAYLMMCHYQDAIRVFANILLYIQRTKSMFQRTTYKYEMINKQNEQMH
Sbjct: 61 PECQVTTYYYVGFAYLMMCHYQDAIRVFANILLYIQRTKSMFQRTTYKYEMINKQNEQMH 120
Query: 121 ALLAIALTMYPMSIDESIHLQRWDKYSNKMLCMQKGDPEVYEELFSYFCPKFLSPVVPNY 180
ALLAIALTMYPMSIDESIHLQRWDKYSNKMLCMQKGDPEVYEELFSYFCPKFLSPVVPNY
Sbjct: 121 ALLAIALTMYPMSIDESIHLQRWDKYSNKMLCMQKGDPEVYEELFSYFCPKFLSPVVPNY 180
Query: 181 DNVHPNYHKEPFLQQPKVFSDEVQQQAQLSTIRSFLKLYTTMPVAKLAGFLDLTEQEFRI 240
DNVHPNYHKEPFLQQPKVFSDEVQQQAQLSTIRSFLKLYTTMPVAKLAGFLDLTEQEFRI
Sbjct: 181 DNVHPNYHKEPFLQQPKVFSDEVQQQAQLSTIRSFLKLYTTMPVAKLAGFLDLTEQEFRI 240
Query: 241 QLPVFKHKLKNLVWTSSITTLDDEFQSASEVDFYIDKDMIHIMDTKVARRYGNFFIRQIH 300
QLPVFKHKLKNLVWTSSITTLDDEFQSASEVDFYIDKDMIHIMDTKVARRYGNFFIRQIH
Sbjct: 241 QLPVFKHKLKNLVWTSSITTLDDEFQSASEVDFYIDKDMIHIMDTKVARRYGNFFIRQIH 300
Query: 301 RFEELNRTLKKMGQRP 316
RFEELNRTLKKMGQRP
Sbjct: 301 RFEELNRTLKKMGQRP 316
>gi|7705433 eukaryotic translation initiation factor 3 subunit 6
interacting protein [Homo sapiens]
Length = 564
Score = 496 bits (1277), Expect = e-140
Identities = 247/271 (91%), Positives = 256/271 (94%)
Query: 46 LFSIELNKKSIYSRVPECQVTTYYYVGFAYLMMCHYQDAIRVFANILLYIQRTKSMFQRT 105
L +IELNKKS+YSRVPECQVTTYYYVGFAYLMM YQDAIRVFANILLYIQRTKSMFQRT
Sbjct: 294 LENIELNKKSMYSRVPECQVTTYYYVGFAYLMMRRYQDAIRVFANILLYIQRTKSMFQRT 353
Query: 106 TYKYEMINKQNEQMHALLAIALTMYPMSIDESIHLQRWDKYSNKMLCMQKGDPEVYEELF 165
TYKYEMINKQNEQMHALLAIALTMYPM IDESIHLQ +KY +KML MQKGDP+VYEELF
Sbjct: 354 TYKYEMINKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDKMLRMQKGDPQVYEELF 413
Query: 166 SYFCPKFLSPVVPNYDNVHPNYHKEPFLQQPKVFSDEVQQQAQLSTIRSFLKLYTTMPVA 225
SY CPKFLSPVVPNYDNVHPNYHKEPFLQQ KVFSDEVQQQAQLSTIRSFLKLYTTMPVA
Sbjct: 414 SYSCPKFLSPVVPNYDNVHPNYHKEPFLQQLKVFSDEVQQQAQLSTIRSFLKLYTTMPVA 473
Query: 226 KLAGFLDLTEQEFRIQLPVFKHKLKNLVWTSSITTLDDEFQSASEVDFYIDKDMIHIMDT 285
KLAGFLDLTEQEFRIQL VFKHK+KNLVWTS I+ LD EFQSASEVDFYIDKDMIHI DT
Sbjct: 474 KLAGFLDLTEQEFRIQLLVFKHKMKNLVWTSGISALDGEFQSASEVDFYIDKDMIHIADT 533
Query: 286 KVARRYGNFFIRQIHRFEELNRTLKKMGQRP 316
KVARRYG+FFIRQIH+FEELNRTLKKMGQRP
Sbjct: 534 KVARRYGDFFIRQIHKFEELNRTLKKMGQRP 564
>gi|224451003 PCI domain containing 2 [Homo sapiens]
Length = 399
Score = 35.8 bits (81), Expect = 0.051
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 225 AKLAGFLDLTEQEFRIQLPVFK-HKLKNLVWTSSITTLDDEFQSASEVDF--YIDKDMIH 281
+K G L L Q F+I + K H K L+ + L D++ +A V + Y+ + +
Sbjct: 163 SKKWGMLFLVNQLFKIYFKINKLHLCKPLIRAIDSSNLKDDYSTAQRVTYKYYVGRKAMF 222
Query: 282 IMDTKVARRYGNFFIRQIHRFEELNRTL 309
D K A Y +F HR + N+ +
Sbjct: 223 DSDFKQAEEYLSFAFEHCHRSSQKNKRM 250
>gi|224451001 PCI domain containing 2 [Homo sapiens]
Length = 399
Score = 35.8 bits (81), Expect = 0.051
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 225 AKLAGFLDLTEQEFRIQLPVFK-HKLKNLVWTSSITTLDDEFQSASEVDF--YIDKDMIH 281
+K G L L Q F+I + K H K L+ + L D++ +A V + Y+ + +
Sbjct: 163 SKKWGMLFLVNQLFKIYFKINKLHLCKPLIRAIDSSNLKDDYSTAQRVTYKYYVGRKAMF 222
Query: 282 IMDTKVARRYGNFFIRQIHRFEELNRTL 309
D K A Y +F HR + N+ +
Sbjct: 223 DSDFKQAEEYLSFAFEHCHRSSQKNKRM 250
>gi|209976986 PCI domain containing 2 [Homo sapiens]
Length = 399
Score = 35.8 bits (81), Expect = 0.051
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 225 AKLAGFLDLTEQEFRIQLPVFK-HKLKNLVWTSSITTLDDEFQSASEVDF--YIDKDMIH 281
+K G L L Q F+I + K H K L+ + L D++ +A V + Y+ + +
Sbjct: 163 SKKWGMLFLVNQLFKIYFKINKLHLCKPLIRAIDSSNLKDDYSTAQRVTYKYYVGRKAMF 222
Query: 282 IMDTKVARRYGNFFIRQIHRFEELNRTL 309
D K A Y +F HR + N+ +
Sbjct: 223 DSDFKQAEEYLSFAFEHCHRSSQKNKRM 250
>gi|126012497 dynein, axonemal, heavy polypeptide 8 [Homo sapiens]
Length = 4490
Score = 30.4 bits (67), Expect = 2.1
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 170 PKFLSPVVPNYDNVHPNYHKEPFLQQPK-VFSDEVQQQAQLSTIRSFLKLY-TTMPVAKL 227
P++ S +VPN DN+ N+ + +Q K V Q A+ ++++LK Y + ++K
Sbjct: 2423 PEYSSILVPNVDNIRTNFLIDTIAKQHKAVLLTGEQGTAKTVMVKAYLKKYDPEVQLSKS 2482
Query: 228 AGFLDLTE 235
F TE
Sbjct: 2483 LNFSSATE 2490
>gi|157952215 protein tyrosine phosphatase, receptor type, B isoform a
[Homo sapiens]
Length = 2215
Score = 29.6 bits (65), Expect = 3.7
Identities = 9/18 (50%), Positives = 15/18 (83%)
Query: 174 SPVVPNYDNVHPNYHKEP 191
+P+ P Y+NV+P YH++P
Sbjct: 2193 NPLFPIYENVNPEYHRDP 2210
>gi|157952213 protein tyrosine phosphatase, receptor type, B isoform b
precursor [Homo sapiens]
Length = 1997
Score = 29.6 bits (65), Expect = 3.7
Identities = 9/18 (50%), Positives = 15/18 (83%)
Query: 174 SPVVPNYDNVHPNYHKEP 191
+P+ P Y+NV+P YH++P
Sbjct: 1975 NPLFPIYENVNPEYHRDP 1992
>gi|122114658 hypothetical protein LOC23053 [Homo sapiens]
Length = 1842
Score = 28.5 bits (62), Expect = 8.2
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 12/80 (15%)
Query: 183 VHPNYHKEPFLQQPKVFSDEVQQQAQLSTIR----------SFLKLYTTMPVAKLAGFLD 232
VHP YH EP L P + E+ Q +S++ + L TT P ++G
Sbjct: 1592 VHP-YHTEPGLPLPTSVACELWGQGTVSSVHPASTFPAIQGASLPALTTQPSPLVSGGFP 1650
Query: 233 LTEQEFRIQLPVFKHKLKNL 252
E+E Q PV H L +L
Sbjct: 1651 PPEEETHSQ-PVNPHSLHHL 1669
>gi|110347427 ubiquitin specific protease 34 [Homo sapiens]
Length = 3546
Score = 28.5 bits (62), Expect = 8.2
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 188 HKEPFLQQPKVFSDEVQQQAQLSTIRSFLKLYTTMPVAKLAG-FLDLTE------QEFRI 240
HK L+ K+F+ ++ + + R F K YT G D+TE +
Sbjct: 1933 HKTTLLELQKMFTYLMESECKAYNPRPFCKTYTMDKQPLNTGEQKDMTEFFTDLITKIEE 1992
Query: 241 QLPVFKHKLKNL---VWTSSITTLDDEFQSASEVDFY 274
P K+ +K+L V T+++ +LD E S + +FY
Sbjct: 1993 MSPELKNTVKSLFGGVITNNVVSLDCEHVSQTAEEFY 2029
>gi|34098959 cytochrome P450, family 2, subfamily U, polypeptide 1
[Homo sapiens]
Length = 544
Score = 28.5 bits (62), Expect = 8.2
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
Query: 160 VYEELFSYFCPKFLSPVVPNYDNVHPNYHKEPFLQQPKVFSD 201
VY +FS+F +L V+ ++ +V +E +QQ +VFSD
Sbjct: 113 VYGSIFSFFIGHYLVVVLSDFHSV-----REALVQQAEVFSD 149
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.138 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,072,154
Number of Sequences: 37866
Number of extensions: 464264
Number of successful extensions: 1252
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1245
Number of HSP's gapped (non-prelim): 14
length of query: 316
length of database: 18,247,518
effective HSP length: 102
effective length of query: 214
effective length of database: 14,385,186
effective search space: 3078429804
effective search space used: 3078429804
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.