Search of human proteins with 169194605

Search of human proteins with 169194605

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169194605 PREDICTED: hypothetical protein LOC340900 [Homo
sapiens]
         (367 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169194605 PREDICTED: hypothetical protein LOC340900 [Homo sap...   736   0.0  
gi|89031814 PREDICTED: hypothetical protein LOC340900 [Homo sapi...   727   0.0  
gi|89030854 PREDICTED: hypothetical protein LOC340900 [Homo sapi...   722   0.0  
gi|40538806 hypothetical protein LOC55096 [Homo sapiens]              318   5e-87
gi|11863154 archain isoform 1 [Homo sapiens]                           29   7.6  

>gi|169194605 PREDICTED: hypothetical protein LOC340900 [Homo
           sapiens]
          Length = 367

 Score =  736 bits (1901), Expect = 0.0
 Identities = 367/367 (100%), Positives = 367/367 (100%)

Query: 1   MSRPRNNPQTSSPQDSTKDGSSFHYFQGRFELSGKSRQYPADALEPQPGIGDVKDIEKAT 60
           MSRPRNNPQTSSPQDSTKDGSSFHYFQGRFELSGKSRQYPADALEPQPGIGDVKDIEKAT
Sbjct: 1   MSRPRNNPQTSSPQDSTKDGSSFHYFQGRFELSGKSRQYPADALEPQPGIGDVKDIEKAT 60

Query: 61  KSMLDPAQRSHFYLVTPSLVFLCFIFDGLHKALLSVGVSKRSNIVIGNENKETGTLYASK 120
           KSMLDPAQRSHFYLVTPSLVFLCFIFDGLHKALLSVGVSKRSNIVIGNENKETGTLYASK
Sbjct: 61  KSMLDPAQRSHFYLVTPSLVFLCFIFDGLHKALLSVGVSKRSNIVIGNENKETGTLYASK 120

Query: 121 FEDVLPTFTALEMSSILRHCCDLLIGIAARSSDPICTNSLQVQRQFKAMMISIGRPLHSE 180
           FEDVLPTFTALEMSSILRHCCDLLIGIAARSSDPICTNSLQVQRQFKAMMISIGRPLHSE
Sbjct: 121 FEDVLPTFTALEMSSILRHCCDLLIGIAARSSDPICTNSLQVQRQFKAMMISIGRPLHSE 180

Query: 181 SADLLISYNAGPAIDWINSRPWVGGLMFTFLFGEFESPACELLDQVKVVASKAQMTTYYT 240
           SADLLISYNAGPAIDWINSRPWVGGLMFTFLFGEFESPACELLDQVKVVASKAQMTTYYT
Sbjct: 181 SADLLISYNAGPAIDWINSRPWVGGLMFTFLFGEFESPACELLDQVKVVASKAQMTTYYT 240

Query: 241 VRMFLDQCVDGSTALPAVVLEIPVFEQKKPLAKKVLGDFFEFGGVLRHPVIGVLSPQMFP 300
           VRMFLDQCVDGSTALPAVVLEIPVFEQKKPLAKKVLGDFFEFGGVLRHPVIGVLSPQMFP
Sbjct: 241 VRMFLDQCVDGSTALPAVVLEIPVFEQKKPLAKKVLGDFFEFGGVLRHPVIGVLSPQMFP 300

Query: 301 NLATAANYWAKRRNSTFSGFEALDIIPGSTITFPVLQMASAQKISRGSDMDPYTLNILRG 360
           NLATAANYWAKRRNSTFSGFEALDIIPGSTITFPVLQMASAQKISRGSDMDPYTLNILRG
Sbjct: 301 NLATAANYWAKRRNSTFSGFEALDIIPGSTITFPVLQMASAQKISRGSDMDPYTLNILRG 360

Query: 361 YGISGFE 367
           YGISGFE
Sbjct: 361 YGISGFE 367


>gi|89031814 PREDICTED: hypothetical protein LOC340900 [Homo
           sapiens]
          Length = 366

 Score =  727 bits (1876), Expect = 0.0
 Identities = 365/367 (99%), Positives = 365/367 (99%), Gaps = 1/367 (0%)

Query: 1   MSRPRNNPQTSSPQDSTKDGSSFHYFQGRFELSGKSRQYPADALEPQPGIGDVKDIEKAT 60
           MSRPRNNPQTSSPQDSTKDGSSFHYFQGRFELSGKSRQYPADALEPQPGIGDVK IEKAT
Sbjct: 1   MSRPRNNPQTSSPQDSTKDGSSFHYFQGRFELSGKSRQYPADALEPQPGIGDVKVIEKAT 60

Query: 61  KSMLDPAQRSHFYLVTPSLVFLCFIFDGLHKALLSVGVSKRSNIVIGNENKETGTLYASK 120
           KSMLDPAQRSHFYLVTPSLVFLCFIFDGLHKALLSVGVSKRSNIVIGNENKETGTLYASK
Sbjct: 61  KSMLDPAQRSHFYLVTPSLVFLCFIFDGLHKALLSVGVSKRSNIVIGNENKETGTLYASK 120

Query: 121 FEDVLPTFTALEMSSILRHCCDLLIGIAARSSDPICTNSLQVQRQFKAMMISIGRPLHSE 180
           FEDVLPTFTALEMSSILRHCCDL IGIAARSSDPICTNSLQVQRQFKAMMISIGRPLHSE
Sbjct: 121 FEDVLPTFTALEMSSILRHCCDL-IGIAARSSDPICTNSLQVQRQFKAMMISIGRPLHSE 179

Query: 181 SADLLISYNAGPAIDWINSRPWVGGLMFTFLFGEFESPACELLDQVKVVASKAQMTTYYT 240
           SADLLISYNAGPAIDWINSRPWVGGLMFTFLFGEFESPACELLDQVKVVASKAQMTTYYT
Sbjct: 180 SADLLISYNAGPAIDWINSRPWVGGLMFTFLFGEFESPACELLDQVKVVASKAQMTTYYT 239

Query: 241 VRMFLDQCVDGSTALPAVVLEIPVFEQKKPLAKKVLGDFFEFGGVLRHPVIGVLSPQMFP 300
           VRMFLDQCVDGSTALPAVVLEIPVFEQKKPLAKKVLGDFFEFGGVLRHPVIGVLSPQMFP
Sbjct: 240 VRMFLDQCVDGSTALPAVVLEIPVFEQKKPLAKKVLGDFFEFGGVLRHPVIGVLSPQMFP 299

Query: 301 NLATAANYWAKRRNSTFSGFEALDIIPGSTITFPVLQMASAQKISRGSDMDPYTLNILRG 360
           NLATAANYWAKRRNSTFSGFEALDIIPGSTITFPVLQMASAQKISRGSDMDPYTLNILRG
Sbjct: 300 NLATAANYWAKRRNSTFSGFEALDIIPGSTITFPVLQMASAQKISRGSDMDPYTLNILRG 359

Query: 361 YGISGFE 367
           YGISGFE
Sbjct: 360 YGISGFE 366


>gi|89030854 PREDICTED: hypothetical protein LOC340900 [Homo
           sapiens]
          Length = 366

 Score =  722 bits (1863), Expect = 0.0
 Identities = 363/367 (98%), Positives = 363/367 (98%), Gaps = 1/367 (0%)

Query: 1   MSRPRNNPQTSSPQDSTKDGSSFHYFQGRFELSGKSRQYPADALEPQPGIGDVKDIEKAT 60
           MSRPRNNPQTSSPQDSTKDGSSFHYFQGRFELSGKSRQYPADALEPQPGIGDVK IEKAT
Sbjct: 1   MSRPRNNPQTSSPQDSTKDGSSFHYFQGRFELSGKSRQYPADALEPQPGIGDVKVIEKAT 60

Query: 61  KSMLDPAQRSHFYLVTPSLVFLCFIFDGLHKALLSVGVSKRSNIVIGNENKETGTLYASK 120
           KSMLDPAQRSHFYLVTPSLVFLCFIFDGLHKALLSVGVSKRSNIVIGNENKETGTLYASK
Sbjct: 61  KSMLDPAQRSHFYLVTPSLVFLCFIFDGLHKALLSVGVSKRSNIVIGNENKETGTLYASK 120

Query: 121 FEDVLPTFTALEMSSILRHCCDLLIGIAARSSDPICTNSLQVQRQFKAMMISIGRPLHSE 180
           FEDVLPTFTALEMSSILRHCCDL IGIAA SSDPICTNSLQVQRQFKAMMISIGRPLHSE
Sbjct: 121 FEDVLPTFTALEMSSILRHCCDL-IGIAAGSSDPICTNSLQVQRQFKAMMISIGRPLHSE 179

Query: 181 SADLLISYNAGPAIDWINSRPWVGGLMFTFLFGEFESPACELLDQVKVVASKAQMTTYYT 240
           SADLLISYNAGPAIDWINSRPWVGGLMFTFLFGEFESPACELLDQVKVVASKAQM TYYT
Sbjct: 180 SADLLISYNAGPAIDWINSRPWVGGLMFTFLFGEFESPACELLDQVKVVASKAQMMTYYT 239

Query: 241 VRMFLDQCVDGSTALPAVVLEIPVFEQKKPLAKKVLGDFFEFGGVLRHPVIGVLSPQMFP 300
           VRMFLDQCVDGSTALPAVVLEIPVFEQKKPLAKKVLGDFFEFGGVLRHPVIGVLSPQMFP
Sbjct: 240 VRMFLDQCVDGSTALPAVVLEIPVFEQKKPLAKKVLGDFFEFGGVLRHPVIGVLSPQMFP 299

Query: 301 NLATAANYWAKRRNSTFSGFEALDIIPGSTITFPVLQMASAQKISRGSDMDPYTLNILRG 360
           NLATAANYWAKRRNSTFSGFEALDIIPGSTITFPVLQMASAQKISRGSDMDPYTLNILRG
Sbjct: 300 NLATAANYWAKRRNSTFSGFEALDIIPGSTITFPVLQMASAQKISRGSDMDPYTLNILRG 359

Query: 361 YGISGFE 367
           YGISGFE
Sbjct: 360 YGISGFE 366


>gi|40538806 hypothetical protein LOC55096 [Homo sapiens]
          Length = 272

 Score =  318 bits (815), Expect = 5e-87
 Identities = 163/222 (73%), Positives = 181/222 (81%), Gaps = 1/222 (0%)

Query: 1   MSRPRNNPQTSSPQDSTKDGSSFHYFQGRFELSGKSRQYPADALEPQPGIGDVKDIEKAT 60
           MS  R + Q SSP D   D S     QGRFELSGK+RQYP DALEPQP IGD+KDI+KA 
Sbjct: 48  MSHLRKDSQPSSPGDDAMDRSGLPDLQGRFELSGKNRQYPLDALEPQPSIGDIKDIKKAA 107

Query: 61  KSMLDPAQRSHFYLVTPSLVFLCFIFDGLHKALLSVGVSKRSNIVIGNENKETGTLYASK 120
           KSMLDPA +SHF+ VTPSLVFLCFIFDGLH+ALLSVGVSKRSN V+GNEN+E GT YAS+
Sbjct: 108 KSMLDPAHKSHFHPVTPSLVFLCFIFDGLHQALLSVGVSKRSNTVVGNENEERGTPYASR 167

Query: 121 FEDVLPTFTALEMSSILRHCCDLLIGIAARSSDPICTNSLQVQRQFKAMMISIGRPLHSE 180
           F+D +P F ALE SS+LRHCCDLLIGIAA SSD ICT+SLQVQR+FKAMM SIGR  H E
Sbjct: 168 FKD-MPNFIALEKSSVLRHCCDLLIGIAAGSSDKICTSSLQVQRRFKAMMASIGRLSHGE 226

Query: 181 SADLLISYNAGPAIDWINSRPWVGGLMFTFLFGEFESPACEL 222
           SADLLIS NA  AI WI+SRPWVG LMFT LFG+FESP  +L
Sbjct: 227 SADLLISCNAESAIGWISSRPWVGELMFTLLFGDFESPLHKL 268


>gi|11863154 archain isoform 1 [Homo sapiens]
          Length = 511

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 11/77 (14%)

Query: 69  RSHFYLVTPSLVFLCFIFDGLHKALLSVGVSKRSNIVIGNENKETGTLYASKFEDVLPTF 128
           + H ++ T S+ +   ++  + K  + +  +K SNI+   E+ ET  L    F  V+P +
Sbjct: 44  KQHTFVETESVRY---VYQPMEKLYMVLITTKNSNIL---EDLETLRL----FSRVIPEY 93

Query: 129 T-ALEMSSILRHCCDLL 144
             ALE + I  HC DL+
Sbjct: 94  CRALEENEISEHCFDLI 110


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.136    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,281,034
Number of Sequences: 37866
Number of extensions: 562371
Number of successful extensions: 1058
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1051
Number of HSP's gapped (non-prelim): 5
length of query: 367
length of database: 18,247,518
effective HSP length: 104
effective length of query: 263
effective length of database: 14,309,454
effective search space: 3763386402
effective search space used: 3763386402
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.