Search of human proteins with 169168415

Search of human proteins with 169168415

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169168415 PREDICTED: hypothetical protein [Homo sapiens]
         (105 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169168415 PREDICTED: hypothetical protein [Homo sapiens]           221   1e-58
gi|42734379 THAP domain containing, apoptosis associated protein...    28   1.5  
gi|187960069 glutamate receptor, metabotropic 8 isoform b precur...    27   3.4  
gi|187960067 glutamate receptor, metabotropic 8 isoform a precur...    27   3.4  

>gi|169168415 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 105

 Score =  221 bits (563), Expect = 1e-58
 Identities = 105/105 (100%), Positives = 105/105 (100%)

Query: 1   MLIGPEQETLTSWLPHSPGAPHFSTTDSAALGRDWGGGDQYHAVSARLFQISRVSALISV 60
           MLIGPEQETLTSWLPHSPGAPHFSTTDSAALGRDWGGGDQYHAVSARLFQISRVSALISV
Sbjct: 1   MLIGPEQETLTSWLPHSPGAPHFSTTDSAALGRDWGGGDQYHAVSARLFQISRVSALISV 60

Query: 61  HFRNDCHSNRSHKNTFTENGEAPGFAYRLTSQSVRGNFSKGLTSP 105
           HFRNDCHSNRSHKNTFTENGEAPGFAYRLTSQSVRGNFSKGLTSP
Sbjct: 61  HFRNDCHSNRSHKNTFTENGEAPGFAYRLTSQSVRGNFSKGLTSP 105


>gi|42734379 THAP domain containing, apoptosis associated protein
          3 [Homo sapiens]
          Length = 175

 Score = 28.1 bits (61), Expect = 1.5
 Identities = 14/49 (28%), Positives = 24/49 (48%)

Query: 49 FQISRVSALISVHFRNDCHSNRSHKNTFTENGEAPGFAYRLTSQSVRGN 97
          F+  + + + S HFR +C S   ++     N     FA++  +Q VR N
Sbjct: 46 FKPKQHTVICSEHFRPECFSAFGNRKNLKHNAVPTVFAFQDPTQQVREN 94


>gi|187960069 glutamate receptor, metabotropic 8 isoform b precursor
           [Homo sapiens]
          Length = 908

 Score = 26.9 bits (58), Expect = 3.4
 Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 4/23 (17%)

Query: 75  TFTENGEAPG----FAYRLTSQS 93
           TF ENG+APG    F Y++T++S
Sbjct: 460 TFNENGDAPGRYDIFQYQITNKS 482


>gi|187960067 glutamate receptor, metabotropic 8 isoform a precursor
           [Homo sapiens]
          Length = 908

 Score = 26.9 bits (58), Expect = 3.4
 Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 4/23 (17%)

Query: 75  TFTENGEAPG----FAYRLTSQS 93
           TF ENG+APG    F Y++T++S
Sbjct: 460 TFNENGDAPGRYDIFQYQITNKS 482


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.130    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,325,765
Number of Sequences: 37866
Number of extensions: 158345
Number of successful extensions: 430
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 428
Number of HSP's gapped (non-prelim): 4
length of query: 105
length of database: 18,247,518
effective HSP length: 76
effective length of query: 29
effective length of database: 15,369,702
effective search space: 445721358
effective search space used: 445721358
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.