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Search of human proteins with 169166004
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169166004 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
(167 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169165661 PREDICTED: hypothetical protein isoform 2 [Homo sap... 342 1e-94
gi|169166004 PREDICTED: hypothetical protein isoform 2 [Homo sap... 342 1e-94
gi|169165205 PREDICTED: hypothetical protein isoform 2 [Homo sap... 342 1e-94
gi|169165663 PREDICTED: hypothetical protein isoform 1 [Homo sap... 254 2e-68
gi|169166006 PREDICTED: hypothetical protein isoform 1 [Homo sap... 254 2e-68
gi|169165207 PREDICTED: hypothetical protein isoform 1 [Homo sap... 254 2e-68
gi|55741845 valyl-tRNA synthetase 2, mitochondrial [Homo sapiens] 28 3.7
gi|156142176 hypothetical protein LOC29090 [Homo sapiens] 28 4.8
gi|239050813 lipoxygenase homology domains 1 isoform 1 [Homo sap... 27 6.2
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa... 27 6.2
gi|13899327 nuclear receptor interacting protein 2 [Homo sapiens] 27 8.1
>gi|169165661 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 167
Score = 342 bits (876), Expect = 1e-94
Identities = 167/167 (100%), Positives = 167/167 (100%)
Query: 1 MRKAEREQRSWWGVTGPMYEADVSSASSFAIYPFTCLRLGNTYFIVLIQVLADGREETPD 60
MRKAEREQRSWWGVTGPMYEADVSSASSFAIYPFTCLRLGNTYFIVLIQVLADGREETPD
Sbjct: 1 MRKAEREQRSWWGVTGPMYEADVSSASSFAIYPFTCLRLGNTYFIVLIQVLADGREETPD 60
Query: 61 PQNDLNDFTRARVTPVLQTHVSQIQLAHCFSPPSSISVEDESAGKNDGWVKGRGNTKAQR 120
PQNDLNDFTRARVTPVLQTHVSQIQLAHCFSPPSSISVEDESAGKNDGWVKGRGNTKAQR
Sbjct: 61 PQNDLNDFTRARVTPVLQTHVSQIQLAHCFSPPSSISVEDESAGKNDGWVKGRGNTKAQR 120
Query: 121 RRLHFRLPRYIKKANSLAFPQATRKGRSDSPAPRVVLKGKDKNKKLV 167
RRLHFRLPRYIKKANSLAFPQATRKGRSDSPAPRVVLKGKDKNKKLV
Sbjct: 121 RRLHFRLPRYIKKANSLAFPQATRKGRSDSPAPRVVLKGKDKNKKLV 167
>gi|169166004 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 167
Score = 342 bits (876), Expect = 1e-94
Identities = 167/167 (100%), Positives = 167/167 (100%)
Query: 1 MRKAEREQRSWWGVTGPMYEADVSSASSFAIYPFTCLRLGNTYFIVLIQVLADGREETPD 60
MRKAEREQRSWWGVTGPMYEADVSSASSFAIYPFTCLRLGNTYFIVLIQVLADGREETPD
Sbjct: 1 MRKAEREQRSWWGVTGPMYEADVSSASSFAIYPFTCLRLGNTYFIVLIQVLADGREETPD 60
Query: 61 PQNDLNDFTRARVTPVLQTHVSQIQLAHCFSPPSSISVEDESAGKNDGWVKGRGNTKAQR 120
PQNDLNDFTRARVTPVLQTHVSQIQLAHCFSPPSSISVEDESAGKNDGWVKGRGNTKAQR
Sbjct: 61 PQNDLNDFTRARVTPVLQTHVSQIQLAHCFSPPSSISVEDESAGKNDGWVKGRGNTKAQR 120
Query: 121 RRLHFRLPRYIKKANSLAFPQATRKGRSDSPAPRVVLKGKDKNKKLV 167
RRLHFRLPRYIKKANSLAFPQATRKGRSDSPAPRVVLKGKDKNKKLV
Sbjct: 121 RRLHFRLPRYIKKANSLAFPQATRKGRSDSPAPRVVLKGKDKNKKLV 167
>gi|169165205 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 167
Score = 342 bits (876), Expect = 1e-94
Identities = 167/167 (100%), Positives = 167/167 (100%)
Query: 1 MRKAEREQRSWWGVTGPMYEADVSSASSFAIYPFTCLRLGNTYFIVLIQVLADGREETPD 60
MRKAEREQRSWWGVTGPMYEADVSSASSFAIYPFTCLRLGNTYFIVLIQVLADGREETPD
Sbjct: 1 MRKAEREQRSWWGVTGPMYEADVSSASSFAIYPFTCLRLGNTYFIVLIQVLADGREETPD 60
Query: 61 PQNDLNDFTRARVTPVLQTHVSQIQLAHCFSPPSSISVEDESAGKNDGWVKGRGNTKAQR 120
PQNDLNDFTRARVTPVLQTHVSQIQLAHCFSPPSSISVEDESAGKNDGWVKGRGNTKAQR
Sbjct: 61 PQNDLNDFTRARVTPVLQTHVSQIQLAHCFSPPSSISVEDESAGKNDGWVKGRGNTKAQR 120
Query: 121 RRLHFRLPRYIKKANSLAFPQATRKGRSDSPAPRVVLKGKDKNKKLV 167
RRLHFRLPRYIKKANSLAFPQATRKGRSDSPAPRVVLKGKDKNKKLV
Sbjct: 121 RRLHFRLPRYIKKANSLAFPQATRKGRSDSPAPRVVLKGKDKNKKLV 167
>gi|169165663 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 132
Score = 254 bits (650), Expect = 2e-68
Identities = 132/167 (79%), Positives = 132/167 (79%), Gaps = 35/167 (20%)
Query: 1 MRKAEREQRSWWGVTGPMYEADVSSASSFAIYPFTCLRLGNTYFIVLIQVLADGREETPD 60
MRKAEREQRSWWGVTGPMYEADVSSASSFAIYPFTCLRLGNTYFIVLIQVLADGREETPD
Sbjct: 1 MRKAEREQRSWWGVTGPMYEADVSSASSFAIYPFTCLRLGNTYFIVLIQVLADGREETPD 60
Query: 61 PQNDLNDFTRARVTPVLQTHVSQIQLAHCFSPPSSISVEDESAGKNDGWVKGRGNTKAQR 120
PQN EDESAGKNDGWVKGRGNTKAQR
Sbjct: 61 PQN-----------------------------------EDESAGKNDGWVKGRGNTKAQR 85
Query: 121 RRLHFRLPRYIKKANSLAFPQATRKGRSDSPAPRVVLKGKDKNKKLV 167
RRLHFRLPRYIKKANSLAFPQATRKGRSDSPAPRVVLKGKDKNKKLV
Sbjct: 86 RRLHFRLPRYIKKANSLAFPQATRKGRSDSPAPRVVLKGKDKNKKLV 132
>gi|169166006 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 132
Score = 254 bits (650), Expect = 2e-68
Identities = 132/167 (79%), Positives = 132/167 (79%), Gaps = 35/167 (20%)
Query: 1 MRKAEREQRSWWGVTGPMYEADVSSASSFAIYPFTCLRLGNTYFIVLIQVLADGREETPD 60
MRKAEREQRSWWGVTGPMYEADVSSASSFAIYPFTCLRLGNTYFIVLIQVLADGREETPD
Sbjct: 1 MRKAEREQRSWWGVTGPMYEADVSSASSFAIYPFTCLRLGNTYFIVLIQVLADGREETPD 60
Query: 61 PQNDLNDFTRARVTPVLQTHVSQIQLAHCFSPPSSISVEDESAGKNDGWVKGRGNTKAQR 120
PQN EDESAGKNDGWVKGRGNTKAQR
Sbjct: 61 PQN-----------------------------------EDESAGKNDGWVKGRGNTKAQR 85
Query: 121 RRLHFRLPRYIKKANSLAFPQATRKGRSDSPAPRVVLKGKDKNKKLV 167
RRLHFRLPRYIKKANSLAFPQATRKGRSDSPAPRVVLKGKDKNKKLV
Sbjct: 86 RRLHFRLPRYIKKANSLAFPQATRKGRSDSPAPRVVLKGKDKNKKLV 132
>gi|169165207 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 132
Score = 254 bits (650), Expect = 2e-68
Identities = 132/167 (79%), Positives = 132/167 (79%), Gaps = 35/167 (20%)
Query: 1 MRKAEREQRSWWGVTGPMYEADVSSASSFAIYPFTCLRLGNTYFIVLIQVLADGREETPD 60
MRKAEREQRSWWGVTGPMYEADVSSASSFAIYPFTCLRLGNTYFIVLIQVLADGREETPD
Sbjct: 1 MRKAEREQRSWWGVTGPMYEADVSSASSFAIYPFTCLRLGNTYFIVLIQVLADGREETPD 60
Query: 61 PQNDLNDFTRARVTPVLQTHVSQIQLAHCFSPPSSISVEDESAGKNDGWVKGRGNTKAQR 120
PQN EDESAGKNDGWVKGRGNTKAQR
Sbjct: 61 PQN-----------------------------------EDESAGKNDGWVKGRGNTKAQR 85
Query: 121 RRLHFRLPRYIKKANSLAFPQATRKGRSDSPAPRVVLKGKDKNKKLV 167
RRLHFRLPRYIKKANSLAFPQATRKGRSDSPAPRVVLKGKDKNKKLV
Sbjct: 86 RRLHFRLPRYIKKANSLAFPQATRKGRSDSPAPRVVLKGKDKNKKLV 132
>gi|55741845 valyl-tRNA synthetase 2, mitochondrial [Homo sapiens]
Length = 1063
Score = 28.1 bits (61), Expect = 3.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 93 PSSISVEDESAGKNDGWVKGRGNTKAQ 119
P+ + VED + G+ D WV GR +A+
Sbjct: 534 PAYLVVEDHAQGEEDCWVVGRSEAEAR 560
>gi|156142176 hypothetical protein LOC29090 [Homo sapiens]
Length = 248
Score = 27.7 bits (60), Expect = 4.8
Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 7/47 (14%)
Query: 86 LAHCFSPPSSISVEDESAGKNDGWVKGRGNTKAQRRRLHFRLPRYIK 132
L C S P I V ES VKG G + RR H R Y+K
Sbjct: 146 LEKCRSHPEVIGVFGES-------VKGYGEVTRRGRRQHVRFTEYVK 185
>gi|239050813 lipoxygenase homology domains 1 isoform 1 [Homo
sapiens]
Length = 2211
Score = 27.3 bits (59), Expect = 6.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 78 QTHVSQIQLAHCFSPPSSISVEDESAGKNDGW 109
+T + I+LA SP S +SV + G N GW
Sbjct: 343 RTDIFHIELAVLLSPLSRVSVGHGNVGVNRGW 374
>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
sapiens]
Length = 2881
Score = 27.3 bits (59), Expect = 6.2
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 98 VEDESAGKNDGWVKGRGNTKAQRRRLHFRLPRYIKKANSLAFPQATRKGRSDSPAPRVVL 157
VE ES + + KA+ R +PR + N FP A+ +G+ + R+
Sbjct: 517 VESESKQEKANRIISEAIAKAKERGER-NIPRVMSPEN---FPTASVEGKEEKKGRRMKS 572
Query: 158 KGKDKNKK 165
K KDK+ K
Sbjct: 573 KPKDKDSK 580
>gi|13899327 nuclear receptor interacting protein 2 [Homo sapiens]
Length = 281
Score = 26.9 bits (58), Expect = 8.1
Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 9/77 (11%)
Query: 91 SPPSSISVEDESAGKNDGWVKGRGNTKAQRRRLHFRLPRYIKKANS---------LAFPQ 141
+PP+ + A +++G + RG R R H R +K+A L
Sbjct: 45 TPPAGAMSTKQEARRDEGEARTRGQEAQLRDRAHLSQQRRLKQATQFLHKDSADLLPLDS 104
Query: 142 ATRKGRSDSPAPRVVLK 158
R G S PR V++
Sbjct: 105 LKRLGTSKDLQPRSVIQ 121
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.132 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,675,679
Number of Sequences: 37866
Number of extensions: 277986
Number of successful extensions: 698
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 687
Number of HSP's gapped (non-prelim): 14
length of query: 167
length of database: 18,247,518
effective HSP length: 95
effective length of query: 72
effective length of database: 14,650,248
effective search space: 1054817856
effective search space used: 1054817856
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.