Guide to the Human Genome
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Search of human proteins with 169166004

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169166004 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
         (167 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169165661 PREDICTED: hypothetical protein isoform 2 [Homo sap...   342   1e-94
gi|169166004 PREDICTED: hypothetical protein isoform 2 [Homo sap...   342   1e-94
gi|169165205 PREDICTED: hypothetical protein isoform 2 [Homo sap...   342   1e-94
gi|169165663 PREDICTED: hypothetical protein isoform 1 [Homo sap...   254   2e-68
gi|169166006 PREDICTED: hypothetical protein isoform 1 [Homo sap...   254   2e-68
gi|169165207 PREDICTED: hypothetical protein isoform 1 [Homo sap...   254   2e-68
gi|55741845 valyl-tRNA synthetase 2, mitochondrial [Homo sapiens]      28   3.7  
gi|156142176 hypothetical protein LOC29090 [Homo sapiens]              28   4.8  
gi|239050813 lipoxygenase homology domains 1 isoform 1 [Homo sap...    27   6.2  
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa...    27   6.2  
gi|13899327 nuclear receptor interacting protein 2 [Homo sapiens]      27   8.1  

>gi|169165661 PREDICTED: hypothetical protein isoform 2 [Homo
           sapiens]
          Length = 167

 Score =  342 bits (876), Expect = 1e-94
 Identities = 167/167 (100%), Positives = 167/167 (100%)

Query: 1   MRKAEREQRSWWGVTGPMYEADVSSASSFAIYPFTCLRLGNTYFIVLIQVLADGREETPD 60
           MRKAEREQRSWWGVTGPMYEADVSSASSFAIYPFTCLRLGNTYFIVLIQVLADGREETPD
Sbjct: 1   MRKAEREQRSWWGVTGPMYEADVSSASSFAIYPFTCLRLGNTYFIVLIQVLADGREETPD 60

Query: 61  PQNDLNDFTRARVTPVLQTHVSQIQLAHCFSPPSSISVEDESAGKNDGWVKGRGNTKAQR 120
           PQNDLNDFTRARVTPVLQTHVSQIQLAHCFSPPSSISVEDESAGKNDGWVKGRGNTKAQR
Sbjct: 61  PQNDLNDFTRARVTPVLQTHVSQIQLAHCFSPPSSISVEDESAGKNDGWVKGRGNTKAQR 120

Query: 121 RRLHFRLPRYIKKANSLAFPQATRKGRSDSPAPRVVLKGKDKNKKLV 167
           RRLHFRLPRYIKKANSLAFPQATRKGRSDSPAPRVVLKGKDKNKKLV
Sbjct: 121 RRLHFRLPRYIKKANSLAFPQATRKGRSDSPAPRVVLKGKDKNKKLV 167


>gi|169166004 PREDICTED: hypothetical protein isoform 2 [Homo
           sapiens]
          Length = 167

 Score =  342 bits (876), Expect = 1e-94
 Identities = 167/167 (100%), Positives = 167/167 (100%)

Query: 1   MRKAEREQRSWWGVTGPMYEADVSSASSFAIYPFTCLRLGNTYFIVLIQVLADGREETPD 60
           MRKAEREQRSWWGVTGPMYEADVSSASSFAIYPFTCLRLGNTYFIVLIQVLADGREETPD
Sbjct: 1   MRKAEREQRSWWGVTGPMYEADVSSASSFAIYPFTCLRLGNTYFIVLIQVLADGREETPD 60

Query: 61  PQNDLNDFTRARVTPVLQTHVSQIQLAHCFSPPSSISVEDESAGKNDGWVKGRGNTKAQR 120
           PQNDLNDFTRARVTPVLQTHVSQIQLAHCFSPPSSISVEDESAGKNDGWVKGRGNTKAQR
Sbjct: 61  PQNDLNDFTRARVTPVLQTHVSQIQLAHCFSPPSSISVEDESAGKNDGWVKGRGNTKAQR 120

Query: 121 RRLHFRLPRYIKKANSLAFPQATRKGRSDSPAPRVVLKGKDKNKKLV 167
           RRLHFRLPRYIKKANSLAFPQATRKGRSDSPAPRVVLKGKDKNKKLV
Sbjct: 121 RRLHFRLPRYIKKANSLAFPQATRKGRSDSPAPRVVLKGKDKNKKLV 167


>gi|169165205 PREDICTED: hypothetical protein isoform 2 [Homo
           sapiens]
          Length = 167

 Score =  342 bits (876), Expect = 1e-94
 Identities = 167/167 (100%), Positives = 167/167 (100%)

Query: 1   MRKAEREQRSWWGVTGPMYEADVSSASSFAIYPFTCLRLGNTYFIVLIQVLADGREETPD 60
           MRKAEREQRSWWGVTGPMYEADVSSASSFAIYPFTCLRLGNTYFIVLIQVLADGREETPD
Sbjct: 1   MRKAEREQRSWWGVTGPMYEADVSSASSFAIYPFTCLRLGNTYFIVLIQVLADGREETPD 60

Query: 61  PQNDLNDFTRARVTPVLQTHVSQIQLAHCFSPPSSISVEDESAGKNDGWVKGRGNTKAQR 120
           PQNDLNDFTRARVTPVLQTHVSQIQLAHCFSPPSSISVEDESAGKNDGWVKGRGNTKAQR
Sbjct: 61  PQNDLNDFTRARVTPVLQTHVSQIQLAHCFSPPSSISVEDESAGKNDGWVKGRGNTKAQR 120

Query: 121 RRLHFRLPRYIKKANSLAFPQATRKGRSDSPAPRVVLKGKDKNKKLV 167
           RRLHFRLPRYIKKANSLAFPQATRKGRSDSPAPRVVLKGKDKNKKLV
Sbjct: 121 RRLHFRLPRYIKKANSLAFPQATRKGRSDSPAPRVVLKGKDKNKKLV 167


>gi|169165663 PREDICTED: hypothetical protein isoform 1 [Homo
           sapiens]
          Length = 132

 Score =  254 bits (650), Expect = 2e-68
 Identities = 132/167 (79%), Positives = 132/167 (79%), Gaps = 35/167 (20%)

Query: 1   MRKAEREQRSWWGVTGPMYEADVSSASSFAIYPFTCLRLGNTYFIVLIQVLADGREETPD 60
           MRKAEREQRSWWGVTGPMYEADVSSASSFAIYPFTCLRLGNTYFIVLIQVLADGREETPD
Sbjct: 1   MRKAEREQRSWWGVTGPMYEADVSSASSFAIYPFTCLRLGNTYFIVLIQVLADGREETPD 60

Query: 61  PQNDLNDFTRARVTPVLQTHVSQIQLAHCFSPPSSISVEDESAGKNDGWVKGRGNTKAQR 120
           PQN                                   EDESAGKNDGWVKGRGNTKAQR
Sbjct: 61  PQN-----------------------------------EDESAGKNDGWVKGRGNTKAQR 85

Query: 121 RRLHFRLPRYIKKANSLAFPQATRKGRSDSPAPRVVLKGKDKNKKLV 167
           RRLHFRLPRYIKKANSLAFPQATRKGRSDSPAPRVVLKGKDKNKKLV
Sbjct: 86  RRLHFRLPRYIKKANSLAFPQATRKGRSDSPAPRVVLKGKDKNKKLV 132


>gi|169166006 PREDICTED: hypothetical protein isoform 1 [Homo
           sapiens]
          Length = 132

 Score =  254 bits (650), Expect = 2e-68
 Identities = 132/167 (79%), Positives = 132/167 (79%), Gaps = 35/167 (20%)

Query: 1   MRKAEREQRSWWGVTGPMYEADVSSASSFAIYPFTCLRLGNTYFIVLIQVLADGREETPD 60
           MRKAEREQRSWWGVTGPMYEADVSSASSFAIYPFTCLRLGNTYFIVLIQVLADGREETPD
Sbjct: 1   MRKAEREQRSWWGVTGPMYEADVSSASSFAIYPFTCLRLGNTYFIVLIQVLADGREETPD 60

Query: 61  PQNDLNDFTRARVTPVLQTHVSQIQLAHCFSPPSSISVEDESAGKNDGWVKGRGNTKAQR 120
           PQN                                   EDESAGKNDGWVKGRGNTKAQR
Sbjct: 61  PQN-----------------------------------EDESAGKNDGWVKGRGNTKAQR 85

Query: 121 RRLHFRLPRYIKKANSLAFPQATRKGRSDSPAPRVVLKGKDKNKKLV 167
           RRLHFRLPRYIKKANSLAFPQATRKGRSDSPAPRVVLKGKDKNKKLV
Sbjct: 86  RRLHFRLPRYIKKANSLAFPQATRKGRSDSPAPRVVLKGKDKNKKLV 132


>gi|169165207 PREDICTED: hypothetical protein isoform 1 [Homo
           sapiens]
          Length = 132

 Score =  254 bits (650), Expect = 2e-68
 Identities = 132/167 (79%), Positives = 132/167 (79%), Gaps = 35/167 (20%)

Query: 1   MRKAEREQRSWWGVTGPMYEADVSSASSFAIYPFTCLRLGNTYFIVLIQVLADGREETPD 60
           MRKAEREQRSWWGVTGPMYEADVSSASSFAIYPFTCLRLGNTYFIVLIQVLADGREETPD
Sbjct: 1   MRKAEREQRSWWGVTGPMYEADVSSASSFAIYPFTCLRLGNTYFIVLIQVLADGREETPD 60

Query: 61  PQNDLNDFTRARVTPVLQTHVSQIQLAHCFSPPSSISVEDESAGKNDGWVKGRGNTKAQR 120
           PQN                                   EDESAGKNDGWVKGRGNTKAQR
Sbjct: 61  PQN-----------------------------------EDESAGKNDGWVKGRGNTKAQR 85

Query: 121 RRLHFRLPRYIKKANSLAFPQATRKGRSDSPAPRVVLKGKDKNKKLV 167
           RRLHFRLPRYIKKANSLAFPQATRKGRSDSPAPRVVLKGKDKNKKLV
Sbjct: 86  RRLHFRLPRYIKKANSLAFPQATRKGRSDSPAPRVVLKGKDKNKKLV 132


>gi|55741845 valyl-tRNA synthetase 2, mitochondrial [Homo sapiens]
          Length = 1063

 Score = 28.1 bits (61), Expect = 3.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 93  PSSISVEDESAGKNDGWVKGRGNTKAQ 119
           P+ + VED + G+ D WV GR   +A+
Sbjct: 534 PAYLVVEDHAQGEEDCWVVGRSEAEAR 560


>gi|156142176 hypothetical protein LOC29090 [Homo sapiens]
          Length = 248

 Score = 27.7 bits (60), Expect = 4.8
 Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 7/47 (14%)

Query: 86  LAHCFSPPSSISVEDESAGKNDGWVKGRGNTKAQRRRLHFRLPRYIK 132
           L  C S P  I V  ES       VKG G    + RR H R   Y+K
Sbjct: 146 LEKCRSHPEVIGVFGES-------VKGYGEVTRRGRRQHVRFTEYVK 185


>gi|239050813 lipoxygenase homology domains 1 isoform 1 [Homo
           sapiens]
          Length = 2211

 Score = 27.3 bits (59), Expect = 6.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 78  QTHVSQIQLAHCFSPPSSISVEDESAGKNDGW 109
           +T +  I+LA   SP S +SV   + G N GW
Sbjct: 343 RTDIFHIELAVLLSPLSRVSVGHGNVGVNRGW 374


>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
           sapiens]
          Length = 2881

 Score = 27.3 bits (59), Expect = 6.2
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 98  VEDESAGKNDGWVKGRGNTKAQRRRLHFRLPRYIKKANSLAFPQATRKGRSDSPAPRVVL 157
           VE ES  +    +      KA+ R     +PR +   N   FP A+ +G+ +    R+  
Sbjct: 517 VESESKQEKANRIISEAIAKAKERGER-NIPRVMSPEN---FPTASVEGKEEKKGRRMKS 572

Query: 158 KGKDKNKK 165
           K KDK+ K
Sbjct: 573 KPKDKDSK 580


>gi|13899327 nuclear receptor interacting protein 2 [Homo sapiens]
          Length = 281

 Score = 26.9 bits (58), Expect = 8.1
 Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 9/77 (11%)

Query: 91  SPPSSISVEDESAGKNDGWVKGRGNTKAQRRRLHFRLPRYIKKANS---------LAFPQ 141
           +PP+      + A +++G  + RG     R R H    R +K+A           L    
Sbjct: 45  TPPAGAMSTKQEARRDEGEARTRGQEAQLRDRAHLSQQRRLKQATQFLHKDSADLLPLDS 104

Query: 142 ATRKGRSDSPAPRVVLK 158
             R G S    PR V++
Sbjct: 105 LKRLGTSKDLQPRSVIQ 121


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.132    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,675,679
Number of Sequences: 37866
Number of extensions: 277986
Number of successful extensions: 698
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 687
Number of HSP's gapped (non-prelim): 14
length of query: 167
length of database: 18,247,518
effective HSP length: 95
effective length of query: 72
effective length of database: 14,650,248
effective search space: 1054817856
effective search space used: 1054817856
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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